HEADER TRANSFERASE 25-JAN-18 6C8Z TITLE LAST COMMON ANCESTOR OF ADP-DEPENDENT PHOSPHOFRUCTOKINASES FROM TITLE 2 METHANOSARCINALES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-DEPENDENT PHOSPHOFRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANCMS; COMPND 5 EC: 2.7.1.146; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINALES; SOURCE 3 ORGANISM_TAXID: 94695; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANCESTRAL PROTEIN RECONSTRUCTION, ADP-DEPENDENT SUGAR KINASES FAMILY, KEYWDS 2 GLUCOKINASE, PHOSPHOFRUCTOKINASE, ENZYME EVOLUTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CASTRO-FERNANDEZ,F.GONZALEZ-ORDENES,S.MUNOZ,N.FUENTES,D.LEONARDO, AUTHOR 2 M.FUENTEALBA,A.HERRERA-MORANDE,P.MATURANA,P.VILLALOBOS,R.GARRATT REVDAT 4 04-OCT-23 6C8Z 1 LINK REVDAT 3 25-JUL-18 6C8Z 1 JRNL REVDAT 2 04-JUL-18 6C8Z 1 JRNL REVDAT 1 07-FEB-18 6C8Z 0 JRNL AUTH F.GONZALEZ-ORDENES,P.A.CEA,N.FUENTES-UGARTE,S.M.MUNOZ, JRNL AUTH 2 R.A.ZAMORA,D.LEONARDO,R.C.GARRATT,V.CASTRO-FERNANDEZ,V.GUIXE JRNL TITL ADP-DEPENDENT KINASES FROM THE ARCHAEAL JRNL TITL 2 ORDERMETHANOSARCINALESADAPT TO SALT BY A NON-CANONICAL JRNL TITL 3 EVOLUTIONARILY CONSERVED STRATEGY. JRNL REF FRONT MICROBIOL V. 9 1305 2018 JRNL REFN ESSN 1664-302X JRNL PMID 29997580 JRNL DOI 10.3389/FMICB.2018.01305 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.347 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.108 REMARK 3 FREE R VALUE TEST SET COUNT : 595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0733 - 4.5369 0.99 2807 139 0.1793 0.1998 REMARK 3 2 4.5369 - 3.6018 1.00 2768 146 0.1836 0.2373 REMARK 3 3 3.6018 - 3.1467 1.00 2741 160 0.2316 0.2857 REMARK 3 4 3.1467 - 2.8590 1.00 2738 150 0.2775 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.456 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.653 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3978 REMARK 3 ANGLE : 1.240 5374 REMARK 3 CHIRALITY : 0.558 612 REMARK 3 PLANARITY : 0.007 686 REMARK 3 DIHEDRAL : 27.988 1496 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458690 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR - REMARK 200 WATER-COOLED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 11, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 37.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13070 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.09400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5K27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CDCL2 0.02M, MGCL2 0.02M, NICL2 (II) REMARK 280 0.02M, PEG MME 2000 24% P/V, SODIUM ACETATE 0.1M PH 4,5, PH 4.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.54050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.99300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.54050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.99300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.01039 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 82.13824 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 489 REMARK 465 GLU A 490 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 LYS A 488 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 31 -82.46 116.75 REMARK 500 LEU A 106 -55.25 -120.88 REMARK 500 LYS A 188 128.71 -37.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 ASP A 42 OD2 59.7 REMARK 620 3 ASP A 44 OD2 133.5 91.6 REMARK 620 4 ASP A 45 OD1 98.5 150.9 91.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 GLU A 47 OE2 52.9 REMARK 620 3 ASP A 298 OD1 56.0 47.5 REMARK 620 4 ASP A 298 OD2 54.6 46.3 1.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 HIS A 227 NE2 0.0 REMARK 620 3 GLU A 230 OE2 122.2 122.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O3B REMARK 620 2 ADP A 501 O2A 84.1 REMARK 620 3 HOH A 601 O 83.3 98.3 REMARK 620 4 HOH A 602 O 115.5 101.0 154.2 REMARK 620 5 HOH A 603 O 149.5 95.4 66.6 94.6 REMARK 620 6 HOH A 604 O 106.3 165.9 74.2 83.2 70.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 DBREF 6C8Z A -20 490 PDB 6C8Z 6C8Z -20 490 SEQRES 1 A 511 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 511 GLU ASN LEU TYR PHE GLN GLY HIS MET ASP ILE SER GLU SEQRES 3 A 511 TRP GLU LYS ARG TYR ASN GLU ALA TYR SER ASP ILE SER SEQRES 4 A 511 LYS SER LEU LYS LYS VAL LYS GLY ILE PHE VAL ALA TYR SEQRES 5 A 511 ASN SER ASN ILE ASP ALA ILE LYS HIS ILE ASP GLU ASP SEQRES 6 A 511 ASP ILE GLU LYS LEU LEU GLU GLN VAL ASP ALA LYS GLU SEQRES 7 A 511 VAL GLN GLU ARG ILE MET GLU TYR PRO ARG GLN ILE ASP SEQRES 8 A 511 SER PRO ALA ASP PHE VAL ALA ARG LEU ILE ILE SER MET SEQRES 9 A 511 ARG ASP GLY LYS ALA ALA GLU VAL PRO THR TYR THR THR SEQRES 10 A 511 ASP ILE HIS GLU TRP LEU THR ASP ASN LEU GLY PHE ASP SEQRES 11 A 511 GLU ALA ARG MET GLY GLY GLN ALA GLY ILE ILE SER ASN SEQRES 12 A 511 LEU LEU ALA ASN MET GLY ILE LYS ASN VAL ILE ALA TYR SEQRES 13 A 511 VAL PRO TRP LEU SER LYS GLU GLN ALA GLU TYR PHE VAL SEQRES 14 A 511 ASP SER GLU ASN LEU LEU HIS PRO VAL VAL GLU ASN GLY SEQRES 15 A 511 LYS LEU GLU LEU LYS HIS PRO LYS GLU ALA TYR ASN PRO SEQRES 16 A 511 ASP ASN LYS PRO LYS VAL ASN TRP ILE ILE GLU PHE SER SEQRES 17 A 511 LYS GLY LEU GLU VAL LYS PHE ALA GLY GLU LYS ILE VAL SEQRES 18 A 511 VAL PRO ARG ASP ASN ARG LEU ILE VAL SER SER ARG PRO SEQRES 19 A 511 PRO TRP ILE ARG ILE ASP MET SER GLU GLU LEU TYR GLU SEQRES 20 A 511 HIS LEU PRO GLU ILE GLY LYS ASN ILE ASP GLY ALA ILE SEQRES 21 A 511 LEU SER GLY TYR GLN MET ILE LYS GLU GLU TYR GLU ASP SEQRES 22 A 511 GLY LYS THR TYR LYS ASP TYR VAL GLU LYS ALA VAL ASN SEQRES 23 A 511 VAL ILE LYS ARG LEU LYS GLU GLY ASN PRO ASP ILE ARG SEQRES 24 A 511 ILE HIS VAL GLU PHE THR SER ILE GLN ASN LYS LEU ILE SEQRES 25 A 511 ARG LYS ALA ILE LEU LYS ASP ILE VAL ARG LYS HIS VAL SEQRES 26 A 511 HIS SER LEU GLY LEU ASP THR VAL GLU VAL ALA ASN ALA SEQRES 27 A 511 LEU ASN VAL LEU GLY TYR GLU GLU LEU ALA TYR SER VAL SEQRES 28 A 511 ILE LYS LYS ASP GLU ASN ALA ILE VAL ALA LEU TYR GLU SEQRES 29 A 511 GLY ALA VAL ILE LEU LEU HIS GLU LEU LYS LEU GLU ARG SEQRES 30 A 511 VAL HIS VAL HIS SER LEU GLY TYR TYR ILE CYS VAL VAL SEQRES 31 A 511 SER LYS ASP SER PRO VAL SER PRO GLU ASP HIS ARG LYS SEQRES 32 A 511 SER LEU LEU PHE ALA SER THR VAL ALA ALA ALA ARG ALA SEQRES 33 A 511 LEU LEU GLY ASN ILE ASN SER LEU ASP ASP ILE GLU ALA SEQRES 34 A 511 GLY LEU ASP VAL PRO VAL SER GLU GLN GLY TYR ASN GLN SEQRES 35 A 511 LEU GLU LYS LEU GLU LYS TYR LEU VAL ARG ARG GLY ILE SEQRES 36 A 511 CYS THR LEU GLU ASP PHE GLU ASN GLY CYS ILE CYS THR SEQRES 37 A 511 PRO ASN HIS ASP VAL ILE ILE ILE PRO THR LYS VAL VAL SEQRES 38 A 511 GLU LYS PRO VAL ALA THR VAL GLY ILE GLY ASP THR ILE SEQRES 39 A 511 SER ALA ALA ALA PHE VAL SER VAL LEU ALA LYS MET LYS SEQRES 40 A 511 LYS LYS ASN GLU HET ADP A 501 27 HET NI A 502 1 HET NI A 503 1 HET NI A 504 1 HET MG A 505 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NI NICKEL (II) ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 NI 3(NI 2+) FORMUL 6 MG MG 2+ FORMUL 7 HOH *4(H2 O) HELIX 1 AA1 ILE A 3 LEU A 21 1 19 HELIX 2 AA2 LYS A 22 VAL A 24 5 3 HELIX 3 AA3 ASP A 42 GLU A 51 1 10 HELIX 4 AA4 ASP A 54 GLU A 64 1 11 HELIX 5 AA5 SER A 71 ASP A 85 1 15 HELIX 6 AA6 THR A 96 LEU A 106 1 11 HELIX 7 AA7 GLY A 115 MET A 127 1 13 HELIX 8 AA8 SER A 140 TYR A 146 1 7 HELIX 9 AA9 HIS A 167 ALA A 171 5 5 HELIX 10 AB1 SER A 221 HIS A 227 1 7 HELIX 11 AB2 HIS A 227 ASN A 234 1 8 HELIX 12 AB3 GLY A 242 ILE A 246 5 5 HELIX 13 AB4 THR A 255 ASN A 274 1 20 HELIX 14 AB5 ASN A 288 ASP A 298 1 11 HELIX 15 AB6 ILE A 299 VAL A 304 1 6 HELIX 16 AB7 THR A 311 LEU A 321 1 11 HELIX 17 AB8 TYR A 323 LYS A 332 1 10 HELIX 18 AB9 ASN A 336 LEU A 352 1 17 HELIX 19 AC1 SER A 376 GLY A 398 1 23 HELIX 20 AC2 ASP A 404 VAL A 412 5 9 HELIX 21 AC3 SER A 415 ARG A 432 1 18 HELIX 22 AC4 THR A 436 GLY A 443 1 8 HELIX 23 AC5 GLY A 468 MET A 485 1 18 SHEET 1 AA111 LEU A 163 LYS A 166 0 SHEET 2 AA111 LEU A 153 VAL A 158 -1 N VAL A 157 O GLU A 164 SHEET 3 AA111 VAL A 132 TYR A 135 1 N ALA A 134 O LEU A 154 SHEET 4 AA111 ILE A 27 ALA A 30 1 N VAL A 29 O ILE A 133 SHEET 5 AA111 GLY A 237 LEU A 240 1 O ILE A 239 N PHE A 28 SHEET 6 AA111 ARG A 278 GLU A 282 1 O HIS A 280 N LEU A 240 SHEET 7 AA111 SER A 306 ASP A 310 1 O SER A 306 N VAL A 281 SHEET 8 AA111 ARG A 356 HIS A 360 1 O HIS A 358 N LEU A 307 SHEET 9 AA111 TYR A 364 SER A 370 -1 O ILE A 366 N VAL A 359 SHEET 10 AA111 HIS A 450 PRO A 456 -1 O ILE A 453 N CYS A 367 SHEET 11 AA111 CYS A 444 THR A 447 -1 N ILE A 445 O VAL A 452 SHEET 1 AA2 5 ALA A 89 THR A 93 0 SHEET 2 AA2 5 ASN A 205 SER A 211 1 O ILE A 208 N VAL A 91 SHEET 3 AA2 5 VAL A 180 PHE A 186 -1 N ILE A 184 O LEU A 207 SHEET 4 AA2 5 ASN A 34 HIS A 40 1 N ALA A 37 O ASN A 181 SHEET 5 AA2 5 GLU A 110 GLY A 114 -1 O GLY A 114 N ASN A 34 SHEET 1 AA3 2 GLU A 191 PHE A 194 0 SHEET 2 AA3 2 GLU A 197 VAL A 200 -1 O GLU A 197 N PHE A 194 LINK OD1 ASP A 42 NI NI A 504 1555 1555 2.14 LINK OD2 ASP A 42 NI NI A 504 1555 1555 2.11 LINK OD2 ASP A 44 NI NI A 504 1555 1555 2.13 LINK OD1 ASP A 45 NI NI A 504 1555 1555 2.14 LINK OE1 GLU A 47 NI NI A 503 1555 3445 2.68 LINK OE2 GLU A 47 NI NI A 503 1555 3445 2.06 LINK NE2 HIS A 227 NI NI A 502 1555 1555 2.27 LINK NE2 HIS A 227 NI NI A 502 1555 2656 2.38 LINK OE2 GLU A 230 NI NI A 502 1555 1555 2.14 LINK OD1 ASP A 298 NI NI A 503 1555 1555 2.10 LINK OD2 ASP A 298 NI NI A 503 1555 1555 2.08 LINK O3B ADP A 501 MG MG A 505 1555 1555 2.04 LINK O2A ADP A 501 MG MG A 505 1555 1555 2.13 LINK MG MG A 505 O HOH A 601 1555 1555 2.05 LINK MG MG A 505 O HOH A 602 1555 1555 1.99 LINK MG MG A 505 O HOH A 603 1555 1555 2.13 LINK MG MG A 505 O HOH A 604 1555 1555 2.06 SITE 1 AC1 11 ASP A 310 HIS A 360 SER A 361 LYS A 458 SITE 2 AC1 11 VAL A 460 GLY A 468 ILE A 469 GLY A 470 SITE 3 AC1 11 ASP A 471 MG A 505 HOH A 601 SITE 1 AC2 2 HIS A 227 GLU A 230 SITE 1 AC3 2 GLU A 47 ASP A 298 SITE 1 AC4 3 ASP A 42 ASP A 44 ASP A 45 SITE 1 AC5 5 ADP A 501 HOH A 601 HOH A 602 HOH A 603 SITE 2 AC5 5 HOH A 604 CRYST1 81.081 75.986 82.442 90.00 94.92 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012333 0.000000 0.001062 0.00000 SCALE2 0.000000 0.013160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012175 0.00000