HEADER HYDROLASE/HYDROLASE INHIBITOR 26-JAN-18 6C9C TITLE CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 2 RACEMIC LIGAND PT803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSAEA.00166.A.DG15,PSAEA.00166.A.DG15,PSAEA.00166.A.DG15, COMPND 5 PSAEA.00166.A.DG15; COMPND 6 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 7 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 8 EC: 3.5.1.108; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN UCBPP-PA14); SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 GENE: LPXC, PA14_57260; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSAEA.00166.A.DG15 KEYWDS INHIBITOR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID, LPXC, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 6C9C 1 REMARK REVDAT 2 03-APR-19 6C9C 1 REMARK REVDAT 1 13-MAR-19 6C9C 0 JRNL AUTH S.L.DELKER,S.J.MAYCLIN,J.N.PHAN,J.ABENDROTH,D.LORIMER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN JRNL TITL 2 COMPLEX WITH LIGAND PT803 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 18648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6437 - 4.8166 1.00 1272 136 0.1621 0.1885 REMARK 3 2 4.8166 - 3.8245 1.00 1254 125 0.1289 0.1588 REMARK 3 3 3.8245 - 3.3415 1.00 1212 150 0.1521 0.1751 REMARK 3 4 3.3415 - 3.0362 1.00 1244 131 0.1586 0.2518 REMARK 3 5 3.0362 - 2.8186 1.00 1223 140 0.1695 0.2189 REMARK 3 6 2.8186 - 2.6525 0.99 1207 157 0.1668 0.2361 REMARK 3 7 2.6525 - 2.5197 1.00 1242 135 0.1724 0.2362 REMARK 3 8 2.5197 - 2.4100 1.00 1202 146 0.1642 0.2208 REMARK 3 9 2.4100 - 2.3173 0.99 1220 136 0.1633 0.2355 REMARK 3 10 2.3173 - 2.2373 1.00 1207 140 0.1686 0.2527 REMARK 3 11 2.2373 - 2.1674 0.99 1221 142 0.1806 0.2302 REMARK 3 12 2.1674 - 2.1054 0.99 1202 122 0.1958 0.2677 REMARK 3 13 2.1054 - 2.0500 0.89 1094 131 0.2100 0.2597 REMARK 3 14 2.0500 - 2.0000 0.76 941 116 0.2159 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2417 REMARK 3 ANGLE : 1.140 3270 REMARK 3 CHIRALITY : 0.127 365 REMARK 3 PLANARITY : 0.005 420 REMARK 3 DIHEDRAL : 19.810 1433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3360 2.8563 4.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1919 REMARK 3 T33: 0.1808 T12: 0.0044 REMARK 3 T13: -0.0076 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.9985 L22: 0.6719 REMARK 3 L33: 0.9160 L12: 0.0779 REMARK 3 L13: -0.4622 L23: 0.0178 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.0264 S13: 0.0711 REMARK 3 S21: -0.0341 S22: -0.0069 S23: -0.0015 REMARK 3 S31: -0.0769 S32: -0.1050 S33: -0.0538 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1586 -8.6733 24.5389 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2613 REMARK 3 T33: 0.1808 T12: 0.0073 REMARK 3 T13: 0.0034 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 4.6209 L22: 8.4607 REMARK 3 L33: 3.5524 L12: -3.9277 REMARK 3 L13: -0.5279 L23: 0.2685 REMARK 3 S TENSOR REMARK 3 S11: -0.1459 S12: -0.3729 S13: -0.4782 REMARK 3 S21: 0.7421 S22: -0.1055 S23: 0.0730 REMARK 3 S31: 0.5809 S32: 0.2073 S33: 0.1498 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8639 -7.2813 15.3718 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.1736 REMARK 3 T33: 0.1462 T12: -0.0199 REMARK 3 T13: -0.0028 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.2168 L22: 2.2559 REMARK 3 L33: 1.0741 L12: -0.6173 REMARK 3 L13: -0.3748 L23: 0.9083 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.1138 S13: -0.0023 REMARK 3 S21: 0.1728 S22: 0.0518 S23: -0.1558 REMARK 3 S31: 0.0425 S32: 0.0367 S33: -0.0445 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2115 22.0660 21.8168 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.2138 REMARK 3 T33: 0.3551 T12: 0.0311 REMARK 3 T13: -0.0032 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 5.2461 L22: 1.4373 REMARK 3 L33: 8.4621 L12: 0.8347 REMARK 3 L13: 0.8498 L23: -1.8507 REMARK 3 S TENSOR REMARK 3 S11: -0.3183 S12: -0.1462 S13: -0.1640 REMARK 3 S21: -0.3828 S22: -0.3296 S23: -0.2938 REMARK 3 S31: 0.7065 S32: 0.1141 S33: 0.6103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.638 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.114 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.39 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRAY296747A A10: 100 MM TRIS-HCL, PH REMARK 280 8.5, 30% (W/V) PROPANOL, 30% (W/V) PEG 3350 +1MM ZNCL2, 1MM REMARK 280 BSI108453 (PT803) : CRYO = 20%EG : PSAEA.00166.A.DG15.PD00471 AT REMARK 280 5 MG/ML, PUCK QCU4-1, PH 7.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.67000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 167 REMARK 465 ARG A 168 REMARK 465 THR A 169 REMARK 465 ILE A 294 REMARK 465 SER A 295 REMARK 465 TYR A 296 REMARK 465 MET A 297 REMARK 465 ARG A 298 REMARK 465 PRO A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 THR A 61 OG1 CG2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 62 -70.12 -112.04 REMARK 500 ALA A 91 146.44 -171.85 REMARK 500 MET A 103 -128.75 57.92 REMARK 500 ARG A 221 163.21 178.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 98.9 REMARK 620 3 ASP A 241 OD2 98.0 99.9 REMARK 620 4 EU1 A 401 O25 122.8 94.1 134.1 REMARK 620 5 EU1 A 401 O27 78.0 157.8 102.3 70.4 REMARK 620 6 F64 A 402 O25 123.7 85.9 136.7 8.2 78.1 REMARK 620 7 F64 A 402 O27 92.6 164.7 88.4 71.1 19.0 79.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EU1 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F64 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VWM RELATED DB: PDB REMARK 900 RELATED ID: 5UPG RELATED DB: PDB DBREF 6C9C A 1 303 UNP Q02H34 LPXC_PSEAB 1 303 SEQADV 6C9C SER A 0 UNP Q02H34 EXPRESSION TAG SEQADV 6C9C VAL A 33 UNP Q02H34 MET 33 ENGINEERED MUTATION SEQRES 1 A 304 SER MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG SEQRES 2 A 304 ALA THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR SEQRES 3 A 304 LEU THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL SEQRES 4 A 304 PHE CYS ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO SEQRES 5 A 304 ALA ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR SEQRES 6 A 304 THR LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU SEQRES 7 A 304 HIS LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 304 ALA TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET SEQRES 9 A 304 ASP GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER SEQRES 10 A 304 ALA GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE SEQRES 11 A 304 ARG ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS SEQRES 12 A 304 ARG ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER SEQRES 13 A 304 PHE GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG SEQRES 14 A 304 THR GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE SEQRES 15 A 304 VAL LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 304 ARG ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU SEQRES 17 A 304 GLY GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN SEQRES 18 A 304 ARG VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU SEQRES 19 A 304 PHE VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 304 TYR LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY SEQRES 21 A 304 PHE LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG SEQRES 22 A 304 THR LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR SEQRES 23 A 304 PHE GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG SEQRES 24 A 304 PRO ALA ALA ALA VAL HET EU1 A 401 36 HET F64 A 402 36 HET ZN A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM EU1 (2R)-4-[4-{4-[(5-CHLORO-6-METHOXYPYRIDIN-3-YL) HETNAM 2 EU1 METHOXY]PHENYL}-2-OXO-3,6-DIHYDROPYRIDIN-1(2H)-YL]-N- HETNAM 3 EU1 HYDROXY-2-METHYL-2-(METHYLSULFONYL)BUTANAMIDE HETNAM F64 (2S)-4-[4-{4-[(5-CHLORO-6-METHOXYPYRIDIN-3-YL) HETNAM 2 F64 METHOXY]PHENYL}-2-OXO-3,6-DIHYDROPYRIDIN-1(2H)-YL]-N- HETNAM 3 F64 HYDROXY-2-METHYL-2-(METHYLSULFONYL)BUTANAMIDE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EU1 C24 H28 CL N3 O7 S FORMUL 3 F64 C24 H28 CL N3 O7 S FORMUL 4 ZN ZN 2+ FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *171(H2 O) HELIX 1 AA1 ARG A 53 VAL A 57 5 5 HELIX 2 AA2 VAL A 76 LEU A 86 1 11 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 HIS A 162 ARG A 166 5 5 HELIX 5 AA5 SER A 180 VAL A 185 1 6 HELIX 6 AA6 MET A 194 GLN A 203 1 10 HELIX 7 AA7 ASP A 232 TYR A 247 1 16 HELIX 8 AA8 LEU A 248 GLY A 250 5 3 HELIX 9 AA9 GLY A 263 ASP A 277 1 15 HELIX 10 AB1 ASP A 288 ALA A 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 122 N GLN A 4 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 PRO A 30 -1 O LEU A 28 N ILE A 11 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 2 THR A 65 LYS A 68 0 SHEET 2 AA3 2 VAL A 71 ASP A 74 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 GLU A 157 1 N SER A 155 O PHE A 257 SHEET 5 AA4 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O VAL A 284 N PHE A 128 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 LINK NE2 HIS A 78 ZN ZN A 403 1555 1555 2.04 LINK NE2 HIS A 237 ZN ZN A 403 1555 1555 2.05 LINK OD2 ASP A 241 ZN ZN A 403 1555 1555 2.11 LINK O25SEU1 A 401 ZN ZN A 403 1555 1555 2.39 LINK O27SEU1 A 401 ZN ZN A 403 1555 1555 2.33 LINK O25RF64 A 402 ZN ZN A 403 1555 1555 2.16 LINK O27RF64 A 402 ZN ZN A 403 1555 1555 2.19 CISPEP 1 ASP A 45 PRO A 46 0 1.75 SITE 1 AC1 20 LEU A 18 MET A 62 GLU A 77 HIS A 78 SITE 2 AC1 20 THR A 190 PHE A 191 GLY A 192 MET A 194 SITE 3 AC1 20 ILE A 197 ARG A 201 GLY A 209 VAL A 216 SITE 4 AC1 20 HIS A 237 LYS A 238 ASP A 241 HIS A 264 SITE 5 AC1 20 F64 A 402 ZN A 403 HOH A 532 HOH A 669 SITE 1 AC2 20 LEU A 18 MET A 62 GLU A 77 HIS A 78 SITE 2 AC2 20 THR A 190 PHE A 191 GLY A 192 MET A 194 SITE 3 AC2 20 ILE A 197 ARG A 201 GLY A 209 VAL A 216 SITE 4 AC2 20 HIS A 237 ASP A 241 HIS A 264 EU1 A 401 SITE 5 AC2 20 ZN A 403 HOH A 508 HOH A 524 HOH A 669 SITE 1 AC3 5 HIS A 78 HIS A 237 ASP A 241 EU1 A 401 SITE 2 AC3 5 F64 A 402 SITE 1 AC4 3 LEU A 113 ARG A 272 HOH A 514 SITE 1 AC5 5 MET A 62 SER A 63 THR A 65 LEU A 205 SITE 2 AC5 5 HOH A 531 SITE 1 AC6 7 ARG A 189 VAL A 211 ASN A 224 GLU A 225 SITE 2 AC6 7 ASP A 226 HOH A 584 HOH A 622 SITE 1 AC7 5 TYR A 25 LEU A 26 THR A 27 THR A 42 SITE 2 AC7 5 GLU A 94 SITE 1 AC8 8 PHE A 152 ILE A 243 LEU A 246 TYR A 247 SITE 2 AC8 8 LEU A 253 HOH A 518 HOH A 523 HOH A 559 CRYST1 35.660 79.340 50.920 90.00 92.01 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028043 0.000000 0.000985 0.00000 SCALE2 0.000000 0.012604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019651 0.00000