HEADER HYDROLASE/HYDROLASE INHIBITOR 01-FEB-18 6CAX TITLE CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 2 PT805 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSAEA.00166.A.DG15; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 6 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 7 EC: 3.5.1.108; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LPXC, PLES_47851; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSAEA.00166.A.DG15 KEYWDS SSGCID, LPXC, LIPID A BIOSYNTHESIS, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE, KEYWDS 3 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CAX 1 LINK REVDAT 1 13-FEB-19 6CAX 0 JRNL AUTH J.N.PHAN,S.L.DELKER,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN JRNL TITL 2 COMPLEX WITH PT805 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 69774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0080 - 3.0121 0.97 4979 160 0.1311 0.1337 REMARK 3 2 3.0121 - 2.3909 0.97 4977 144 0.1495 0.1723 REMARK 3 3 2.3909 - 2.0887 0.96 4960 132 0.1436 0.1468 REMARK 3 4 2.0887 - 1.8977 0.96 4910 142 0.1418 0.1673 REMARK 3 5 1.8977 - 1.7617 0.96 4896 140 0.1610 0.1870 REMARK 3 6 1.7617 - 1.6578 0.95 4863 149 0.1675 0.1849 REMARK 3 7 1.6578 - 1.5748 0.94 4858 139 0.1637 0.1681 REMARK 3 8 1.5748 - 1.5062 0.94 4801 136 0.1707 0.2230 REMARK 3 9 1.5062 - 1.4482 0.94 4849 131 0.1830 0.2061 REMARK 3 10 1.4482 - 1.3983 0.93 4807 140 0.1993 0.1737 REMARK 3 11 1.3983 - 1.3545 0.93 4753 129 0.2092 0.2368 REMARK 3 12 1.3545 - 1.3158 0.93 4743 126 0.2119 0.2299 REMARK 3 13 1.3158 - 1.2812 0.92 4752 138 0.2244 0.2181 REMARK 3 14 1.2812 - 1.2499 0.91 4675 145 0.2369 0.2350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6346 6.3302 -10.7026 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.0669 REMARK 3 T33: 0.0627 T12: 0.0005 REMARK 3 T13: -0.0005 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1467 L22: 1.2687 REMARK 3 L33: 0.6690 L12: -0.0878 REMARK 3 L13: 0.1699 L23: 0.4603 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0290 S13: -0.0272 REMARK 3 S21: -0.0742 S22: -0.0729 S23: 0.0339 REMARK 3 S31: -0.0116 S32: -0.0560 S33: 0.0533 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0363 9.8634 -2.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0659 REMARK 3 T33: 0.0767 T12: -0.0113 REMARK 3 T13: -0.0142 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.1869 L22: 3.0145 REMARK 3 L33: 2.4532 L12: 0.1770 REMARK 3 L13: -0.8207 L23: -0.7760 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.1496 S13: 0.1814 REMARK 3 S21: 0.1848 S22: -0.0671 S23: -0.1643 REMARK 3 S31: -0.1799 S32: 0.1787 S33: -0.0199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7686 3.4324 -4.1055 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0677 REMARK 3 T33: 0.0466 T12: 0.0004 REMARK 3 T13: -0.0110 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.7421 L22: 1.3892 REMARK 3 L33: 0.5428 L12: -0.0840 REMARK 3 L13: -0.4186 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0426 S13: 0.0009 REMARK 3 S21: -0.0437 S22: -0.0222 S23: -0.0051 REMARK 3 S31: 0.0019 S32: -0.0478 S33: 0.0206 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9265 -9.2988 0.7438 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0452 REMARK 3 T33: 0.0457 T12: -0.0182 REMARK 3 T13: 0.0204 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.0211 L22: 0.5361 REMARK 3 L33: 2.6244 L12: -0.0909 REMARK 3 L13: 1.8359 L23: 0.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.0162 S13: -0.0450 REMARK 3 S21: 0.0008 S22: 0.0104 S23: -0.0477 REMARK 3 S31: 0.0829 S32: 0.0794 S33: -0.0906 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8325 -5.5275 16.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0962 REMARK 3 T33: 0.0634 T12: -0.0096 REMARK 3 T13: -0.0058 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.2954 L22: 3.2923 REMARK 3 L33: 4.5280 L12: -2.0465 REMARK 3 L13: -2.3639 L23: 3.6172 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.1336 S13: 0.0137 REMARK 3 S21: 0.1553 S22: 0.0982 S23: -0.0535 REMARK 3 S31: 0.1357 S32: 0.0995 S33: -0.0438 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1337 3.6441 12.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0633 REMARK 3 T33: 0.0451 T12: -0.0052 REMARK 3 T13: -0.0094 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5559 L22: 0.9504 REMARK 3 L33: 1.1847 L12: -0.0708 REMARK 3 L13: -0.2414 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0248 S13: -0.0219 REMARK 3 S21: 0.0758 S22: -0.0516 S23: 0.0410 REMARK 3 S31: -0.0526 S32: -0.0012 S33: 0.0508 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2076 -6.3255 1.8664 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0492 REMARK 3 T33: 0.0466 T12: 0.0131 REMARK 3 T13: -0.0142 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.6864 L22: 1.8442 REMARK 3 L33: 1.7138 L12: 0.2458 REMARK 3 L13: -0.3711 L23: 0.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0260 S13: 0.0430 REMARK 3 S21: -0.0615 S22: 0.0107 S23: -0.0362 REMARK 3 S31: -0.0263 S32: 0.0034 S33: -0.0295 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9158 -17.4255 -8.7263 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1378 REMARK 3 T33: 0.1576 T12: -0.0108 REMARK 3 T13: 0.0003 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.5784 L22: 1.4778 REMARK 3 L33: 0.6798 L12: -1.9066 REMARK 3 L13: -0.9425 L23: 0.5490 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.2177 S13: -0.0275 REMARK 3 S21: 0.1206 S22: 0.0110 S23: 0.1700 REMARK 3 S31: 0.1234 S32: -0.0521 S33: -0.1598 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.986 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.645 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.66 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5UPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES HCL, PH 7.2, 50MM CACL2, REMARK 280 4% (W/V) PROPANOL, 26% (W/V) PEG 3350, REMARK 280 PSAEA.00166.A.DG15.PD00442 AT 5MG/ML + 1MM ZNCL2 + 1MM BSI REMARK 280 108454, CRYO: 20% EG: CRYO = 20%EG: TRAY 296748 B11, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 220 O HOH A 501 2.05 REMARK 500 O HOH A 683 O HOH A 848 2.14 REMARK 500 O HOH A 514 O HOH A 771 2.16 REMARK 500 OD1 ASP A 279 O HOH A 502 2.17 REMARK 500 O HOH A 672 O HOH A 724 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 26 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 62 -4.41 72.05 REMARK 500 MET A 62 -6.90 74.31 REMARK 500 MET A 103 -126.94 60.14 REMARK 500 ASP A 159 81.44 -154.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 94.6 REMARK 620 3 ASP A 241 OD1 95.8 98.0 REMARK 620 4 ASP A 241 OD2 150.0 90.7 54.2 REMARK 620 5 EUY A 401 O24 123.9 90.6 138.5 85.4 REMARK 620 6 EUY A 401 O26 93.4 165.2 93.5 88.5 74.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 277 OD1 REMARK 620 2 ASP A 279 OD1 102.8 REMARK 620 3 ASP A 279 OD2 86.0 56.4 REMARK 620 4 EUY A 402 O24 51.6 63.6 91.3 REMARK 620 5 EUY A 402 O26 47.6 67.5 92.1 4.3 REMARK 620 6 HOH A 525 O 105.9 68.3 124.7 61.2 63.9 REMARK 620 7 HOH A 542 O 80.4 139.7 84.1 132.0 127.9 150.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EUY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EUY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UPG RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT INHIBITOR DBREF 6CAX A 1 303 UNP B7UZI4 LPXC_PSEA8 1 303 SEQADV 6CAX SER A 0 UNP B7UZI4 EXPRESSION TAG SEQRES 1 A 304 SER MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG SEQRES 2 A 304 ALA THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR SEQRES 3 A 304 LEU THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL SEQRES 4 A 304 PHE CYS ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO SEQRES 5 A 304 ALA ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR SEQRES 6 A 304 THR LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU SEQRES 7 A 304 HIS LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 304 ALA TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET SEQRES 9 A 304 ASP GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER SEQRES 10 A 304 ALA GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE SEQRES 11 A 304 ARG ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS SEQRES 12 A 304 ARG ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER SEQRES 13 A 304 PHE GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG SEQRES 14 A 304 THR GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE SEQRES 15 A 304 VAL LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 304 ARG ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU SEQRES 17 A 304 GLY GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN SEQRES 18 A 304 ARG VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU SEQRES 19 A 304 PHE VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 304 TYR LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY SEQRES 21 A 304 PHE LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG SEQRES 22 A 304 THR LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR SEQRES 23 A 304 PHE GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG SEQRES 24 A 304 PRO ALA ALA ALA VAL HET EUY A 401 30 HET EUY A 402 30 HET ZN A 403 1 HET ZN A 404 1 HET CL A 405 1 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 8 HET EDO A 409 8 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HET EDO A 418 4 HET EDO A 419 4 HET EDO A 420 4 HET EDO A 421 4 HET EDO A 422 4 HETNAM EUY (2R)-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)-4-{2-OXO-4- HETNAM 2 EUY [4-(2H-1,2,3-TRIAZOL-2-YL)PHENYL]PYRIDIN-1(2H)- HETNAM 3 EUY YL}BUTANAMIDE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EUY 2(C19 H21 N5 O5 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 EDO 17(C2 H6 O2) FORMUL 24 HOH *376(H2 O) HELIX 1 AA1 ARG A 53 GLU A 55 5 3 HELIX 2 AA2 VAL A 76 GLY A 87 1 12 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 SER A 180 VAL A 185 1 6 HELIX 5 AA5 ASP A 196 GLN A 203 1 8 HELIX 6 AA6 ASP A 232 TYR A 247 1 16 HELIX 7 AA7 LEU A 248 GLY A 250 5 3 HELIX 8 AA8 GLY A 263 ASP A 277 1 15 HELIX 9 AA9 ASP A 288 ALA A 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 120 N THR A 6 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 LYS A 29 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 3 VAL A 57 GLU A 59 0 SHEET 2 AA3 3 THR A 65 LYS A 68 -1 O THR A 65 N GLY A 58 SHEET 3 AA3 3 VAL A 71 ASP A 74 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 GLU A 157 1 N LYS A 153 O PHE A 257 SHEET 5 AA4 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O GLU A 282 N ARG A 130 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 LINK NE2 HIS A 78 ZN ZN A 403 1555 1555 2.13 LINK NE2 HIS A 237 ZN ZN A 403 1555 1555 2.11 LINK OD1 ASP A 241 ZN ZN A 403 1555 1555 2.07 LINK OD2 ASP A 241 ZN ZN A 403 1555 1555 2.62 LINK OD1 ASP A 277 ZN ZN A 404 1555 1555 1.95 LINK OD1BASP A 279 ZN ZN A 404 1555 1555 2.54 LINK OD2BASP A 279 ZN ZN A 404 1555 1555 1.99 LINK O24 EUY A 401 ZN ZN A 403 1555 1555 2.08 LINK O26 EUY A 401 ZN ZN A 403 1555 1555 2.11 LINK O24AEUY A 402 ZN ZN A 404 1555 1455 1.96 LINK O26AEUY A 402 ZN ZN A 404 1555 1455 1.95 LINK ZN ZN A 404 O HOH A 525 1555 1655 1.74 LINK ZN ZN A 404 O BHOH A 542 1555 1555 1.98 CISPEP 1 ASP A 45 PRO A 46 0 -4.30 SITE 1 AC1 20 LEU A 18 HIS A 19 MET A 62 GLU A 77 SITE 2 AC1 20 HIS A 78 THR A 190 PHE A 191 GLY A 192 SITE 3 AC1 20 ILE A 197 SER A 210 VAL A 216 HIS A 237 SITE 4 AC1 20 LYS A 238 ASP A 241 HIS A 264 ZN A 403 SITE 5 AC1 20 HOH A 509 HOH A 698 HOH A 703 HOH A 711 SITE 1 AC2 29 ALA A 84 GLY A 85 PHE A 152 PHE A 176 SITE 2 AC2 29 SER A 177 SER A 178 THR A 179 SER A 180 SITE 3 AC2 29 PHE A 181 ILE A 243 SER A 252 LEU A 253 SITE 4 AC2 29 ASP A 277 ASP A 279 SER A 295 MET A 297 SITE 5 AC2 29 ZN A 404 HOH A 521 HOH A 522 HOH A 523 SITE 6 AC2 29 HOH A 525 HOH A 541 HOH A 542 HOH A 545 SITE 7 AC2 29 HOH A 569 HOH A 590 HOH A 733 HOH A 786 SITE 8 AC2 29 HOH A 808 SITE 1 AC3 4 HIS A 78 HIS A 237 ASP A 241 EUY A 401 SITE 1 AC4 5 ASP A 277 ASP A 279 EUY A 402 HOH A 525 SITE 2 AC4 5 HOH A 542 SITE 1 AC5 2 GLY A 263 LEU A 266 SITE 1 AC6 5 LYS A 29 TYR A 92 HOH A 506 HOH A 579 SITE 2 AC6 5 HOH A 614 SITE 1 AC7 7 HIS A 19 THR A 61 SER A 63 LEU A 205 SITE 2 AC7 7 HOH A 510 HOH A 512 HOH A 544 SITE 1 AC8 9 GLY A 108 VAL A 111 PHE A 112 VAL A 182 SITE 2 AC8 9 SER A 186 ARG A 187 ARG A 272 THR A 273 SITE 3 AC8 9 HOH A 584 SITE 1 AC9 9 GLU A 138 GLY A 140 LEU A 228 ARG A 229 SITE 2 AC9 9 GLU A 231 HOH A 511 HOH A 553 HOH A 582 SITE 3 AC9 9 HOH A 643 SITE 1 AD1 7 ARG A 221 VAL A 222 LEU A 223 GLU A 225 SITE 2 AD1 7 THR A 285 HOH A 748 HOH A 751 SITE 1 AD2 5 ARG A 133 GLU A 134 PRO A 148 HOH A 505 SITE 2 AD2 5 HOH A 622 SITE 1 AD3 3 GLU A 139 ARG A 189 ARG A 229 SITE 1 AD4 6 ARG A 189 VAL A 211 ASN A 224 GLU A 225 SITE 2 AD4 6 ASP A 226 HOH A 555 SITE 1 AD5 5 PRO A 109 ARG A 272 HOH A 527 HOH A 573 SITE 2 AD5 5 HOH A 617 SITE 1 AD6 6 PHE A 193 ARG A 195 ASP A 196 HOH A 558 SITE 2 AD6 6 HOH A 561 HOH A 613 SITE 1 AD7 5 ARG A 168 GLN A 170 GLN A 171 HOH A 532 SITE 2 AD7 5 HOH A 598 SITE 1 AD8 8 GLU A 22 LYS A 23 THR A 291 ALA A 292 SITE 2 AD8 8 PRO A 293 HOH A 517 HOH A 648 HOH A 785 SITE 1 AD9 6 GLU A 22 SER A 98 ASP A 150 EDO A 419 SITE 2 AD9 6 HOH A 578 HOH A 693 SITE 1 AE1 4 ASP A 150 ASN A 204 EDO A 418 HOH A 606 SITE 1 AE2 4 LYS A 127 ASN A 251 VAL A 283 HOH A 556 SITE 1 AE3 5 ASP A 161 ALA A 289 ARG A 290 HOH A 683 SITE 2 AE3 5 HOH A 759 SITE 1 AE4 8 LEU A 44 ASP A 45 PRO A 163 ARG A 168 SITE 2 AE4 8 ASN A 220 HOH A 531 HOH A 538 HOH A 724 CRYST1 35.760 47.470 48.230 111.26 109.17 98.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027964 0.003928 0.012711 0.00000 SCALE2 0.000000 0.021273 0.010322 0.00000 SCALE3 0.000000 0.000000 0.024399 0.00000