HEADER HYDROLASE 01-FEB-18 6CAZ TITLE CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PDF,POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 GENE: DEF, LPG2595; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, METALLOENZYME, LEGIONNAIRES' DISEASE, KEYWDS 2 LEGIONELLOSIS, GRAM-NEGATIVE BACTERIA, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CAZ 1 REMARK REVDAT 1 14-FEB-18 6CAZ 0 JRNL AUTH T.E.EDWARDS,P.S.HORANYI,D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM LEGIONELLA JRNL TITL 2 PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8508 - 3.4335 1.00 2871 136 0.1531 0.1850 REMARK 3 2 3.4335 - 2.7254 1.00 2720 142 0.1719 0.2038 REMARK 3 3 2.7254 - 2.3809 1.00 2703 134 0.1695 0.1943 REMARK 3 4 2.3809 - 2.1632 1.00 2662 146 0.1611 0.1881 REMARK 3 5 2.1632 - 2.0081 1.00 2649 146 0.1634 0.1692 REMARK 3 6 2.0081 - 1.8897 1.00 2654 145 0.1701 0.2020 REMARK 3 7 1.8897 - 1.7951 1.00 2674 129 0.1692 0.1976 REMARK 3 8 1.7951 - 1.7170 1.00 2598 149 0.1667 0.2101 REMARK 3 9 1.7170 - 1.6509 0.99 2607 131 0.1694 0.2030 REMARK 3 10 1.6509 - 1.5939 0.99 2588 138 0.1733 0.1709 REMARK 3 11 1.5939 - 1.5441 0.97 2577 119 0.1839 0.2160 REMARK 3 12 1.5441 - 1.4999 0.97 2523 140 0.2203 0.2181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1835 14.0932 18.4155 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1435 REMARK 3 T33: 0.1919 T12: 0.0385 REMARK 3 T13: 0.0519 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.0172 L22: 3.2296 REMARK 3 L33: 6.5138 L12: -0.1815 REMARK 3 L13: 0.1261 L23: -0.3067 REMARK 3 S TENSOR REMARK 3 S11: 0.1733 S12: 0.0253 S13: 0.5599 REMARK 3 S21: 0.2628 S22: 0.1338 S23: 0.6607 REMARK 3 S31: -0.4015 S32: -0.4600 S33: -0.3418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3535 3.3772 20.7349 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.1252 REMARK 3 T33: 0.1121 T12: 0.0214 REMARK 3 T13: -0.0093 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.0720 L22: 2.9945 REMARK 3 L33: 2.7132 L12: 0.5728 REMARK 3 L13: -0.7947 L23: -0.9850 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: -0.0127 S13: 0.0278 REMARK 3 S21: 0.1918 S22: 0.1733 S23: 0.2251 REMARK 3 S31: -0.0624 S32: -0.2854 S33: -0.1701 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4810 -3.8368 10.2403 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.4368 REMARK 3 T33: 0.3718 T12: -0.1769 REMARK 3 T13: -0.1627 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 3.2247 L22: 1.3625 REMARK 3 L33: 5.3781 L12: 1.0823 REMARK 3 L13: -0.6170 L23: -1.8777 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.1094 S13: -0.3525 REMARK 3 S21: -0.4771 S22: 0.0127 S23: 0.6941 REMARK 3 S31: 0.4780 S32: -0.8614 S33: -0.3134 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1182 -1.9531 8.2443 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.1092 REMARK 3 T33: 0.1189 T12: 0.0075 REMARK 3 T13: -0.0073 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.8011 L22: 0.7787 REMARK 3 L33: 2.5253 L12: 0.1224 REMARK 3 L13: -0.1136 L23: -0.9623 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0324 S13: -0.1112 REMARK 3 S21: -0.2846 S22: 0.0541 S23: -0.0520 REMARK 3 S31: 0.6326 S32: 0.0118 S33: -0.0051 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4131 0.1264 8.7735 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.0893 REMARK 3 T33: 0.1175 T12: 0.0157 REMARK 3 T13: -0.0127 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.5328 L22: 1.1366 REMARK 3 L33: 2.0918 L12: 0.3909 REMARK 3 L13: -0.3358 L23: -1.0231 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0815 S13: -0.1626 REMARK 3 S21: -0.3149 S22: 0.0471 S23: -0.0204 REMARK 3 S31: 0.4284 S32: 0.0052 S33: -0.0332 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3242 22.6630 6.3805 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.1338 REMARK 3 T33: 0.1335 T12: 0.0245 REMARK 3 T13: 0.0023 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 7.1488 L22: 5.1079 REMARK 3 L33: 5.5398 L12: -3.5448 REMARK 3 L13: -4.9132 L23: 2.9451 REMARK 3 S TENSOR REMARK 3 S11: 0.3019 S12: 0.1600 S13: 0.5588 REMARK 3 S21: -0.1144 S22: -0.1405 S23: -0.0731 REMARK 3 S31: -0.5010 S32: -0.2174 S33: -0.1767 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.829 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.04 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.83 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.5 MG/ML LEPNA.00882.A.B1.P38390 REMARK 280 AGAINST MORPHEUS SCREEN CONDITION F1 10% PEG 10,000, 20% PEG 550 REMARK 280 MME, 0.02 M EACH MONOSACCHARIDE (D-GLUCOSE, D-MANNOSE, D- REMARK 280 GALACTOSE, L-FUCOSE, D-XYLOSE, N-ACETYL-D-GLUCOSAMINE), 0.1 M REMARK 280 MES/IMIDAZOLE PH 6.5, CRYSTAL TRACKING ID 297178F1, UGH2-12, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 HIS A 82 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 88 OG1 THR A 100 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 31.04 -97.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 573 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 HIS A 133 NE2 116.9 REMARK 620 3 HIS A 137 NE2 103.3 98.3 REMARK 620 4 CL A 202 CL 113.1 104.2 120.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.00882.A RELATED DB: TARGETTRACK DBREF 6CAZ A 1 170 UNP Q5ZSC4 Q5ZSC4_LEGPH 1 170 SEQADV 6CAZ MET A -7 UNP Q5ZSC4 INITIATING METHIONINE SEQADV 6CAZ ALA A -6 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A -5 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A -4 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A -3 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A -2 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A -1 UNP Q5ZSC4 EXPRESSION TAG SEQADV 6CAZ HIS A 0 UNP Q5ZSC4 EXPRESSION TAG SEQRES 1 A 178 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE ARG LYS SEQRES 2 A 178 ILE LEU TYR LEU PRO ASP GLU ARG LEU ARG LYS ILE ALA SEQRES 3 A 178 LYS PRO VAL GLU THR PHE ASP GLU SER LEU GLN THR LEU SEQRES 4 A 178 ILE ASN ASP MET PHE ASP THR MET TYR ASP ALA ARG GLY SEQRES 5 A 178 VAL GLY LEU ALA ALA PRO GLN ILE GLY VAL SER LEU ARG SEQRES 6 A 178 LEU SER VAL ILE ASP ILE VAL GLY ASP LYS LYS GLU GLN SEQRES 7 A 178 ILE VAL ILE VAL ASN PRO GLU ILE VAL SER SER HIS GLY SEQRES 8 A 178 GLU LYS GLU PHE GLU GLU GLY CYS LEU SER VAL PRO GLY SEQRES 9 A 178 ALA TYR ASP THR VAL VAL ARG ALA GLU LYS VAL THR VAL SEQRES 10 A 178 LYS ALA LEU ASP ARG PHE GLY LYS PRO PHE GLU ILE THR SEQRES 11 A 178 GLY GLU GLY LEU LEU ALA GLU CYS LEU GLN HIS GLU ILE SEQRES 12 A 178 ASP HIS MET ASN GLY LYS LEU PHE VAL ASP MET LEU SER SEQRES 13 A 178 PRO LEU LYS ARG MET MET ALA ARG ARG LYS LEU ASP LYS SEQRES 14 A 178 PHE LYS ARG LEU GLN ALA ARG LYS PRO HET MES A 201 12 HET CL A 202 1 HET NI A 203 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM NI NICKEL (II) ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 CL CL 1- FORMUL 4 NI NI 2+ FORMUL 5 HOH *273(H2 O) HELIX 1 AA1 ASP A 11 LYS A 16 5 6 HELIX 2 AA2 ASP A 25 ALA A 42 1 18 HELIX 3 AA3 PRO A 50 GLY A 53 5 4 HELIX 4 AA4 GLY A 125 ASN A 139 1 15 HELIX 5 AA5 LEU A 142 LEU A 147 5 6 HELIX 6 AA6 SER A 148 LYS A 169 1 22 SHEET 1 AA1 5 GLY A 46 ALA A 48 0 SHEET 2 AA1 5 LEU A 58 ILE A 61 -1 O VAL A 60 N LEU A 47 SHEET 3 AA1 5 ILE A 71 HIS A 82 -1 O ILE A 71 N ILE A 61 SHEET 4 AA1 5 LYS A 106 LEU A 112 -1 O LYS A 106 N HIS A 82 SHEET 5 AA1 5 PRO A 118 GLU A 124 -1 O ILE A 121 N VAL A 109 SHEET 1 AA2 2 LYS A 85 GLU A 89 0 SHEET 2 AA2 2 ASP A 99 ARG A 103 -1 O ASP A 99 N GLU A 89 LINK SG CYS A 91 NI NI A 203 1555 1555 2.28 LINK NE2 HIS A 133 NI NI A 203 1555 1555 2.04 LINK NE2 HIS A 137 NI NI A 203 1555 1555 2.09 LINK CL CL A 202 NI NI A 203 1555 1555 2.29 CISPEP 1 LEU A 9 PRO A 10 0 7.24 SITE 1 AC1 15 VAL A 45 GLY A 90 CYS A 91 LEU A 92 SITE 2 AC1 15 LEU A 126 GLU A 129 CYS A 130 HIS A 133 SITE 3 AC1 15 LEU A 150 HOH A 336 HOH A 347 HOH A 360 SITE 4 AC1 15 HOH A 361 HOH A 416 HOH A 450 SITE 1 AC2 4 GLN A 51 LEU A 92 HIS A 133 NI A 203 SITE 1 AC3 5 GLN A 51 CYS A 91 HIS A 133 HIS A 137 SITE 2 AC3 5 CL A 202 CRYST1 38.210 50.900 105.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026171 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009494 0.00000