HEADER TRANSFERASE 01-FEB-18 6CB0 TITLE CRYSTAL STRUCTURE OF THE FAK FERM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FADK 1,FOCAL ADHESION KINASE-RELATED NONKINASE,P41/P43FRNK, COMPND 5 PROTEIN-TYROSINE KINASE 2,P125FAK,PP125FAK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: PTK2, FAK, FAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAK FERM DOMAIN, SRC SH3 BINDING SITE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DEMENTIEV,T.MARLOWE REVDAT 3 04-OCT-23 6CB0 1 JRNL REVDAT 2 05-JUN-19 6CB0 1 JRNL REVDAT 1 06-FEB-19 6CB0 0 JRNL AUTH T.MARLOWE,A.DEMENTIEV,S.FIGEL,A.RIVERA,M.FLAVIN,W.CANCE JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FAK FERM DOMAIN JRNL TITL 2 REVEALS NEW INSIGHTS ON THE DRUGGABILITY OF TYROSINE 397 AND JRNL TITL 3 THE SRC SH3 BINDING SITE. JRNL REF BMC MOL CELL BIOL V. 20 10 2019 JRNL REFN ESSN 2661-8850 JRNL PMID 31109284 JRNL DOI 10.1186/S12860-019-0193-4 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 52861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2818 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5470 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 399 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5612 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5106 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7621 ; 1.788 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11821 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 704 ; 6.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;35.028 ;24.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 932 ;14.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;13.033 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 857 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6280 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1147 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2804 ; 4.507 ; 4.309 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2803 ; 4.506 ; 4.307 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3497 ; 6.159 ; 6.428 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3498 ; 6.158 ; 6.429 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2808 ; 5.174 ; 4.565 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2809 ; 5.173 ; 4.567 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4119 ; 7.495 ; 6.693 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6338 ; 9.481 ;50.822 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6250 ; 9.434 ;50.512 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 123.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.83200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K/NA TARTRATE, 20% PEG 3,350, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.07600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.57750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.95100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.57750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.07600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.95100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 MET A 30 REMARK 465 LEU A 376 REMARK 465 ALA A 377 REMARK 465 ASN A 378 REMARK 465 ASN A 379 REMARK 465 GLU A 380 REMARK 465 LYS A 381 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 465 VAL A 384 REMARK 465 ARG A 385 REMARK 465 SER A 386 REMARK 465 HIS A 387 REMARK 465 THR A 388 REMARK 465 VAL A 389 REMARK 465 SER A 390 REMARK 465 GLU A 403 REMARK 465 GLU A 404 REMARK 465 ASP A 405 REMARK 465 GLY B 28 REMARK 465 SER B 29 REMARK 465 MET B 30 REMARK 465 GLY B 31 REMARK 465 ALA B 32 REMARK 465 MET B 33 REMARK 465 GLU B 182 REMARK 465 MET B 183 REMARK 465 ARG B 184 REMARK 465 GLY B 185 REMARK 465 ASN B 186 REMARK 465 ALA B 187 REMARK 465 ASP B 311 REMARK 465 ARG B 312 REMARK 465 LYS B 313 REMARK 465 ALA B 377 REMARK 465 ASN B 378 REMARK 465 ASN B 379 REMARK 465 GLU B 380 REMARK 465 LYS B 381 REMARK 465 GLN B 382 REMARK 465 GLY B 383 REMARK 465 VAL B 384 REMARK 465 ARG B 385 REMARK 465 SER B 386 REMARK 465 HIS B 387 REMARK 465 THR B 388 REMARK 465 VAL B 389 REMARK 465 SER B 390 REMARK 465 VAL B 391 REMARK 465 SER B 392 REMARK 465 GLU B 393 REMARK 465 GLU B 403 REMARK 465 GLU B 404 REMARK 465 ASP B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 ARG A 312 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 VAL A 391 CG1 CG2 REMARK 470 SER A 392 OG REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 VAL B 196 CG1 CG2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 ARG B 221 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 ARG B 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 SER B 307 OG REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ASP B 309 CG OD1 OD2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 ARG B 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 375 CG CD CE NZ REMARK 470 LEU B 376 CG CD1 CD2 REMARK 470 THR B 394 OG1 CG2 REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 470 ASP B 402 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 665 O HOH B 668 1.82 REMARK 500 OG SER A 88 O HOH A 501 1.84 REMARK 500 O HOH B 501 O HOH B 540 1.89 REMARK 500 O HOH B 509 O HOH B 668 1.95 REMARK 500 O HOH B 649 O HOH B 674 2.01 REMARK 500 O HOH B 614 O HOH B 636 2.01 REMARK 500 OE1 GLN A 356 O HOH A 502 2.05 REMARK 500 O HOH A 633 O HOH A 642 2.06 REMARK 500 O HOH A 597 O HOH A 646 2.09 REMARK 500 ND2 ASN B 145 O HOH B 501 2.10 REMARK 500 O HOH A 576 O HOH A 677 2.10 REMARK 500 O HOH A 713 O HOH B 664 2.11 REMARK 500 O HOH A 659 O HOH A 714 2.13 REMARK 500 O HOH A 644 O HOH A 705 2.16 REMARK 500 O PRO B 374 O HOH B 502 2.18 REMARK 500 O HOH A 689 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 717 O HOH B 672 1455 1.93 REMARK 500 OE1 GLU A 399 NE2 GLN B 226 3554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 CG - CD - NE ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 177 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 108 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 171.09 -59.79 REMARK 500 LEU A 100 -39.09 -38.84 REMARK 500 TYR A 180 69.97 -106.84 REMARK 500 THR A 284 -99.79 -118.39 REMARK 500 GLN A 363 -40.76 -132.34 REMARK 500 THR B 50 -66.34 -17.59 REMARK 500 THR B 51 46.40 -108.42 REMARK 500 LYS B 199 -60.07 -98.12 REMARK 500 ASN B 235 -169.64 -74.43 REMARK 500 CYS B 260 -168.11 -161.85 REMARK 500 THR B 284 -53.37 -122.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 287 ALA B 288 -146.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 177 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 719 DISTANCE = 6.37 ANGSTROMS DBREF 6CB0 A 31 405 UNP Q00944 FAK1_CHICK 31 405 DBREF 6CB0 B 31 405 UNP Q00944 FAK1_CHICK 31 405 SEQADV 6CB0 GLY A 28 UNP Q00944 EXPRESSION TAG SEQADV 6CB0 SER A 29 UNP Q00944 EXPRESSION TAG SEQADV 6CB0 MET A 30 UNP Q00944 EXPRESSION TAG SEQADV 6CB0 GLY B 28 UNP Q00944 EXPRESSION TAG SEQADV 6CB0 SER B 29 UNP Q00944 EXPRESSION TAG SEQADV 6CB0 MET B 30 UNP Q00944 EXPRESSION TAG SEQRES 1 A 378 GLY SER MET GLY ALA MET GLU ARG VAL LEU LYS VAL PHE SEQRES 2 A 378 HIS TYR PHE GLU ASN SER SER GLU PRO THR THR TRP ALA SEQRES 3 A 378 SER ILE ILE ARG HIS GLY ASP ALA THR ASP VAL ARG GLY SEQRES 4 A 378 ILE ILE GLN LYS ILE VAL ASP CYS HIS LYS VAL LYS ASN SEQRES 5 A 378 VAL ALA CYS TYR GLY LEU ARG LEU SER HIS LEU GLN SER SEQRES 6 A 378 GLU GLU VAL HIS TRP LEU HIS LEU ASP MET GLY VAL SER SEQRES 7 A 378 ASN VAL ARG GLU LYS PHE GLU LEU ALA HIS PRO PRO GLU SEQRES 8 A 378 GLU TRP LYS TYR GLU LEU ARG ILE ARG TYR LEU PRO LYS SEQRES 9 A 378 GLY PHE LEU ASN GLN PHE THR GLU ASP LYS PRO THR LEU SEQRES 10 A 378 ASN PHE PHE TYR GLN GLN VAL LYS ASN ASP TYR MET LEU SEQRES 11 A 378 GLU ILE ALA ASP GLN VAL ASP GLN GLU ILE ALA LEU LYS SEQRES 12 A 378 LEU GLY CYS LEU GLU ILE ARG ARG SER TYR GLY GLU MET SEQRES 13 A 378 ARG GLY ASN ALA LEU GLU LYS LYS SER ASN TYR GLU VAL SEQRES 14 A 378 LEU GLU LYS ASP VAL GLY LEU ARG ARG PHE PHE PRO LYS SEQRES 15 A 378 SER LEU LEU ASP SER VAL LYS ALA LYS THR LEU ARG LYS SEQRES 16 A 378 LEU ILE GLN GLN THR PHE ARG GLN PHE ALA ASN LEU ASN SEQRES 17 A 378 ARG GLU GLU SER ILE LEU LYS PHE PHE GLU ILE LEU SER SEQRES 18 A 378 PRO VAL TYR ARG PHE ASP LYS GLU CYS PHE LYS CYS ALA SEQRES 19 A 378 LEU GLY SER SER TRP ILE ILE SER VAL GLU LEU ALA ILE SEQRES 20 A 378 GLY PRO GLU GLU GLY ILE SER TYR LEU THR ASP LYS GLY SEQRES 21 A 378 ALA ASN PRO THR HIS LEU ALA ASP PHE ASN GLN VAL GLN SEQRES 22 A 378 THR ILE GLN TYR SER ASN SER GLU ASP LYS ASP ARG LYS SEQRES 23 A 378 GLY MET LEU GLN LEU LYS ILE ALA GLY ALA PRO GLU PRO SEQRES 24 A 378 LEU THR VAL THR ALA PRO SER LEU THR ILE ALA GLU ASN SEQRES 25 A 378 MET ALA ASP LEU ILE ASP GLY TYR CYS ARG LEU VAL ASN SEQRES 26 A 378 GLY ALA THR GLN SER PHE ILE ILE ARG PRO GLN LYS GLU SEQRES 27 A 378 GLY GLU ARG ALA LEU PRO SER ILE PRO LYS LEU ALA ASN SEQRES 28 A 378 ASN GLU LYS GLN GLY VAL ARG SER HIS THR VAL SER VAL SEQRES 29 A 378 SER GLU THR ASP ASP TYR ALA GLU ILE ILE ASP GLU GLU SEQRES 30 A 378 ASP SEQRES 1 B 378 GLY SER MET GLY ALA MET GLU ARG VAL LEU LYS VAL PHE SEQRES 2 B 378 HIS TYR PHE GLU ASN SER SER GLU PRO THR THR TRP ALA SEQRES 3 B 378 SER ILE ILE ARG HIS GLY ASP ALA THR ASP VAL ARG GLY SEQRES 4 B 378 ILE ILE GLN LYS ILE VAL ASP CYS HIS LYS VAL LYS ASN SEQRES 5 B 378 VAL ALA CYS TYR GLY LEU ARG LEU SER HIS LEU GLN SER SEQRES 6 B 378 GLU GLU VAL HIS TRP LEU HIS LEU ASP MET GLY VAL SER SEQRES 7 B 378 ASN VAL ARG GLU LYS PHE GLU LEU ALA HIS PRO PRO GLU SEQRES 8 B 378 GLU TRP LYS TYR GLU LEU ARG ILE ARG TYR LEU PRO LYS SEQRES 9 B 378 GLY PHE LEU ASN GLN PHE THR GLU ASP LYS PRO THR LEU SEQRES 10 B 378 ASN PHE PHE TYR GLN GLN VAL LYS ASN ASP TYR MET LEU SEQRES 11 B 378 GLU ILE ALA ASP GLN VAL ASP GLN GLU ILE ALA LEU LYS SEQRES 12 B 378 LEU GLY CYS LEU GLU ILE ARG ARG SER TYR GLY GLU MET SEQRES 13 B 378 ARG GLY ASN ALA LEU GLU LYS LYS SER ASN TYR GLU VAL SEQRES 14 B 378 LEU GLU LYS ASP VAL GLY LEU ARG ARG PHE PHE PRO LYS SEQRES 15 B 378 SER LEU LEU ASP SER VAL LYS ALA LYS THR LEU ARG LYS SEQRES 16 B 378 LEU ILE GLN GLN THR PHE ARG GLN PHE ALA ASN LEU ASN SEQRES 17 B 378 ARG GLU GLU SER ILE LEU LYS PHE PHE GLU ILE LEU SER SEQRES 18 B 378 PRO VAL TYR ARG PHE ASP LYS GLU CYS PHE LYS CYS ALA SEQRES 19 B 378 LEU GLY SER SER TRP ILE ILE SER VAL GLU LEU ALA ILE SEQRES 20 B 378 GLY PRO GLU GLU GLY ILE SER TYR LEU THR ASP LYS GLY SEQRES 21 B 378 ALA ASN PRO THR HIS LEU ALA ASP PHE ASN GLN VAL GLN SEQRES 22 B 378 THR ILE GLN TYR SER ASN SER GLU ASP LYS ASP ARG LYS SEQRES 23 B 378 GLY MET LEU GLN LEU LYS ILE ALA GLY ALA PRO GLU PRO SEQRES 24 B 378 LEU THR VAL THR ALA PRO SER LEU THR ILE ALA GLU ASN SEQRES 25 B 378 MET ALA ASP LEU ILE ASP GLY TYR CYS ARG LEU VAL ASN SEQRES 26 B 378 GLY ALA THR GLN SER PHE ILE ILE ARG PRO GLN LYS GLU SEQRES 27 B 378 GLY GLU ARG ALA LEU PRO SER ILE PRO LYS LEU ALA ASN SEQRES 28 B 378 ASN GLU LYS GLN GLY VAL ARG SER HIS THR VAL SER VAL SEQRES 29 B 378 SER GLU THR ASP ASP TYR ALA GLU ILE ILE ASP GLU GLU SEQRES 30 B 378 ASP FORMUL 3 HOH *399(H2 O) HELIX 1 AA1 GLU A 48 THR A 51 5 4 HELIX 2 AA2 ASP A 63 HIS A 75 1 13 HELIX 3 AA3 ASN A 79 ALA A 81 5 3 HELIX 4 AA4 GLY A 103 HIS A 115 1 13 HELIX 5 AA5 PRO A 116 GLU A 118 5 3 HELIX 6 AA6 GLY A 132 GLU A 139 1 8 HELIX 7 AA7 ASP A 140 ILE A 159 1 20 HELIX 8 AA8 ASP A 164 TYR A 180 1 17 HELIX 9 AA9 ASN A 186 GLU A 189 5 4 HELIX 10 AB1 LYS A 190 ASP A 200 1 11 HELIX 11 AB2 GLY A 202 PHE A 206 5 5 HELIX 12 AB3 PRO A 208 SER A 214 1 7 HELIX 13 AB4 LYS A 216 GLN A 230 1 15 HELIX 14 AB5 ASN A 235 SER A 248 1 14 HELIX 15 AB6 PRO A 249 TYR A 251 5 3 HELIX 16 AB7 ASP A 295 ASN A 297 5 3 HELIX 17 AB8 SER A 333 GLY A 353 1 21 HELIX 18 AB9 GLU B 48 THR B 51 5 4 HELIX 19 AC1 ASP B 63 HIS B 75 1 13 HELIX 20 AC2 ASN B 79 ALA B 81 5 3 HELIX 21 AC3 GLY B 103 GLU B 112 1 10 HELIX 22 AC4 PRO B 116 GLU B 118 5 3 HELIX 23 AC5 GLY B 132 GLU B 139 1 8 HELIX 24 AC6 ASP B 140 ILE B 159 1 20 HELIX 25 AC7 ASP B 164 TYR B 180 1 17 HELIX 26 AC8 LYS B 190 ASP B 200 1 11 HELIX 27 AC9 GLY B 202 PHE B 206 5 5 HELIX 28 AD1 PRO B 208 VAL B 215 1 8 HELIX 29 AD2 LYS B 216 ALA B 232 1 17 HELIX 30 AD3 ASN B 235 SER B 248 1 14 HELIX 31 AD4 PRO B 249 TYR B 251 5 3 HELIX 32 AD5 ASP B 295 ASN B 297 5 3 HELIX 33 AD6 SER B 333 ASN B 352 1 20 SHEET 1 AA1 6 VAL A 95 LEU A 98 0 SHEET 2 AA1 6 TYR A 83 HIS A 89 -1 N LEU A 87 O HIS A 96 SHEET 3 AA1 6 TRP A 120 ILE A 126 -1 O ARG A 125 N GLY A 84 SHEET 4 AA1 6 VAL A 36 PHE A 40 1 N PHE A 40 O LEU A 124 SHEET 5 AA1 6 ALA A 53 HIS A 58 -1 O ILE A 56 N LEU A 37 SHEET 6 AA1 6 ALA A 398 ILE A 400 -1 O GLU A 399 N ARG A 57 SHEET 1 AA2 8 THR A 291 ALA A 294 0 SHEET 2 AA2 8 GLY A 279 TYR A 282 -1 N TYR A 282 O THR A 291 SHEET 3 AA2 8 ILE A 268 GLY A 275 -1 N ALA A 273 O SER A 281 SHEET 4 AA2 8 GLU A 256 LEU A 262 -1 N CYS A 260 O VAL A 270 SHEET 5 AA2 8 LEU A 327 ALA A 331 -1 O THR A 330 N ALA A 261 SHEET 6 AA2 8 GLY A 314 ILE A 320 -1 N LEU A 316 O VAL A 329 SHEET 7 AA2 8 VAL A 299 ASN A 306 -1 N GLN A 300 O LYS A 319 SHEET 8 AA2 8 GLU A 367 ARG A 368 -1 O ARG A 368 N TYR A 304 SHEET 1 AA3 6 VAL B 95 LEU B 98 0 SHEET 2 AA3 6 TYR B 83 HIS B 89 -1 N LEU B 87 O HIS B 96 SHEET 3 AA3 6 TRP B 120 ILE B 126 -1 O ARG B 125 N GLY B 84 SHEET 4 AA3 6 ARG B 35 PHE B 40 1 N PHE B 40 O LEU B 124 SHEET 5 AA3 6 ALA B 53 HIS B 58 -1 O ILE B 56 N LEU B 37 SHEET 6 AA3 6 ALA B 398 ILE B 400 -1 O GLU B 399 N ARG B 57 SHEET 1 AA4 8 THR B 291 ALA B 294 0 SHEET 2 AA4 8 GLY B 279 TYR B 282 -1 N TYR B 282 O THR B 291 SHEET 3 AA4 8 ILE B 268 GLY B 275 -1 N ALA B 273 O SER B 281 SHEET 4 AA4 8 GLU B 256 LEU B 262 -1 N PHE B 258 O LEU B 272 SHEET 5 AA4 8 LEU B 327 THR B 330 -1 O THR B 330 N ALA B 261 SHEET 6 AA4 8 MET B 315 ILE B 320 -1 N LEU B 316 O VAL B 329 SHEET 7 AA4 8 VAL B 299 ASN B 306 -1 N GLN B 300 O LYS B 319 SHEET 8 AA4 8 LEU B 370 PRO B 371 1 O LEU B 370 N TYR B 304 CRYST1 50.152 123.902 135.155 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019939 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007399 0.00000