HEADER RNA 05-FEB-18 6CC3 TITLE CRYSTAL STRUCTURE OF YKOY-MNTP RIBOSWITCH CHIMERA BOUND TO CADMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (101-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 4 ORGANISM_TAXID: 1358 KEYWDS RIBOSWITCH, RNA, YYBP-YKOY EXPDTA X-RAY DIFFRACTION AUTHOR S.BACHAS,A.R.FERRE-D'AMARE REVDAT 3 04-OCT-23 6CC3 1 LINK REVDAT 2 29-AUG-18 6CC3 1 JRNL REVDAT 1 13-JUN-18 6CC3 0 JRNL AUTH S.T.BACHAS,A.R.FERRE-D'AMARE JRNL TITL CONVERGENT USE OF HEPTACOORDINATION FOR CATION SELECTIVITY JRNL TITL 2 BY RNA AND PROTEIN METALLOREGULATORS. JRNL REF CELL CHEM BIOL V. 25 962 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29805037 JRNL DOI 10.1016/J.CHEMBIOL.2018.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 19173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6648 - 6.4978 0.99 1285 144 0.1921 0.2423 REMARK 3 2 6.4978 - 5.1596 1.00 1258 139 0.1746 0.2031 REMARK 3 3 5.1596 - 4.5080 1.00 1266 141 0.1554 0.1968 REMARK 3 4 4.5080 - 4.0961 1.00 1260 140 0.1501 0.2051 REMARK 3 5 4.0961 - 3.8027 1.00 1228 137 0.1634 0.2299 REMARK 3 6 3.8027 - 3.5786 0.99 1250 138 0.1800 0.2461 REMARK 3 7 3.5786 - 3.3994 1.00 1232 137 0.1898 0.2560 REMARK 3 8 3.3994 - 3.2515 0.99 1230 135 0.1976 0.2816 REMARK 3 9 3.2515 - 3.1263 1.00 1242 136 0.2164 0.2560 REMARK 3 10 3.1263 - 3.0185 1.00 1267 142 0.2353 0.2881 REMARK 3 11 3.0185 - 2.9241 0.99 1223 136 0.2536 0.2981 REMARK 3 12 2.9241 - 2.8405 0.99 1205 133 0.2971 0.3624 REMARK 3 13 2.8405 - 2.7658 0.95 1179 132 0.3575 0.4003 REMARK 3 14 2.7658 - 2.6983 0.91 1132 126 0.3973 0.4305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4676 REMARK 3 ANGLE : 0.513 7284 REMARK 3 CHIRALITY : 0.026 968 REMARK 3 PLANARITY : 0.003 194 REMARK 3 DIHEDRAL : 13.902 2323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:35) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7236 -6.7791 21.8418 REMARK 3 T TENSOR REMARK 3 T11: 0.3746 T22: 0.7279 REMARK 3 T33: 0.5122 T12: -0.1573 REMARK 3 T13: -0.0038 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 4.3361 L22: 1.1026 REMARK 3 L33: 0.9966 L12: 0.8662 REMARK 3 L13: 1.5679 L23: 1.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: 0.0105 S13: 0.0912 REMARK 3 S21: -0.1614 S22: 0.0679 S23: 0.3246 REMARK 3 S31: -0.0084 S32: -0.2501 S33: 0.0565 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:71) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6680 -20.6839 25.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.3546 T22: 0.5801 REMARK 3 T33: 0.3749 T12: -0.0914 REMARK 3 T13: -0.0058 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 5.6431 L22: 2.6094 REMARK 3 L33: 0.0462 L12: 2.1439 REMARK 3 L13: -0.0173 L23: 0.5207 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.3425 S13: 0.1040 REMARK 3 S21: -0.1788 S22: -0.1359 S23: 0.0157 REMARK 3 S31: -0.0621 S32: -0.2391 S33: 0.1355 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 72:91) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1062 -0.5811 40.4958 REMARK 3 T TENSOR REMARK 3 T11: 0.3021 T22: 0.5591 REMARK 3 T33: 0.5123 T12: -0.0120 REMARK 3 T13: 0.0039 T23: -0.1167 REMARK 3 L TENSOR REMARK 3 L11: 0.5923 L22: 1.8098 REMARK 3 L33: 4.4793 L12: 1.0495 REMARK 3 L13: -0.1078 L23: 0.5587 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: 0.0444 S13: -0.1374 REMARK 3 S21: -0.1979 S22: -0.0064 S23: 0.2947 REMARK 3 S31: 0.1259 S32: -0.1785 S33: 0.1752 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 92:102) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5979 -4.9112 7.0502 REMARK 3 T TENSOR REMARK 3 T11: 0.5935 T22: 0.4811 REMARK 3 T33: 0.7519 T12: -0.0281 REMARK 3 T13: -0.2897 T23: 0.1075 REMARK 3 L TENSOR REMARK 3 L11: 7.1112 L22: 2.5583 REMARK 3 L33: 5.4490 L12: 2.0614 REMARK 3 L13: -1.1217 L23: 1.3266 REMARK 3 S TENSOR REMARK 3 S11: -0.1700 S12: -0.4152 S13: -0.2432 REMARK 3 S21: -0.1395 S22: -0.1825 S23: 0.1061 REMARK 3 S31: -0.0988 S32: -0.4067 S33: 0.3071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 3:28) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5434 -26.8393 7.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.5731 T22: 0.8292 REMARK 3 T33: 0.6627 T12: -0.0168 REMARK 3 T13: 0.1244 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 4.8883 L22: 2.0899 REMARK 3 L33: 5.2424 L12: 2.9314 REMARK 3 L13: -3.8437 L23: -2.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.4260 S12: 0.2450 S13: -0.5540 REMARK 3 S21: -0.5664 S22: 0.0517 S23: 0.2232 REMARK 3 S31: 0.4286 S32: -0.0335 S33: 0.4262 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 29:74) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9140 -15.6863 13.4515 REMARK 3 T TENSOR REMARK 3 T11: 0.4324 T22: 0.7084 REMARK 3 T33: 0.4132 T12: -0.0746 REMARK 3 T13: 0.0877 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.8654 L22: 5.3849 REMARK 3 L33: 5.9042 L12: -0.2157 REMARK 3 L13: -1.1586 L23: -1.3494 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: -0.4250 S13: -0.2458 REMARK 3 S21: -0.2415 S22: -0.4184 S23: -0.1354 REMARK 3 S31: 0.5455 S32: 0.4317 S33: 0.3266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 82:85) REMARK 3 ORIGIN FOR THE GROUP (A): 57.1034 -43.2800 27.5869 REMARK 3 T TENSOR REMARK 3 T11: 4.9274 T22: 1.3996 REMARK 3 T33: 2.6440 T12: 0.2003 REMARK 3 T13: 0.1718 T23: 0.2371 REMARK 3 L TENSOR REMARK 3 L11: 5.8601 L22: 1.9984 REMARK 3 L33: 7.3790 L12: -1.7100 REMARK 3 L13: 4.5321 L23: -3.2810 REMARK 3 S TENSOR REMARK 3 S11: 1.5317 S12: -0.6332 S13: -0.7364 REMARK 3 S21: 3.0687 S22: 0.8778 S23: -0.5492 REMARK 3 S31: 1.0558 S32: -0.0008 S33: -2.0196 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 86:101) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3134 -23.3017 -4.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.8918 T22: 0.9223 REMARK 3 T33: 0.6424 T12: -0.0770 REMARK 3 T13: 0.0347 T23: -0.2388 REMARK 3 L TENSOR REMARK 3 L11: 5.4016 L22: 5.3671 REMARK 3 L33: 2.5375 L12: -0.1281 REMARK 3 L13: -0.2342 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.6302 S12: 0.5277 S13: -0.2006 REMARK 3 S21: -1.3325 S22: 0.0606 S23: 0.4494 REMARK 3 S31: 0.2718 S32: -0.0698 S33: 0.6152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.698 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Y1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MAGNESIUM FORMATE, 15% PEG REMARK 280 3350, 5MM CADMIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.76550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.14400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.76550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.14400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 2 REMARK 465 G B 2 REMARK 465 A B 75 REMARK 465 C B 76 REMARK 465 G B 77 REMARK 465 A B 78 REMARK 465 A B 79 REMARK 465 A B 80 REMARK 465 G B 81 REMARK 465 C B 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5' A A 3 O3' GTP A 217 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 208 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 O6 REMARK 620 2 HOH A 319 O 66.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 9 OP1 REMARK 620 2 A A 39 OP2 86.5 REMARK 620 3 C A 40 OP2 128.6 92.6 REMARK 620 4 C A 44 OP1 112.7 160.7 73.7 REMARK 620 5 U A 45 OP2 76.5 74.4 151.7 111.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 209 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 9 OP1 REMARK 620 2 A A 39 OP1 76.3 REMARK 620 3 C A 44 O3' 89.0 137.5 REMARK 620 4 U A 45 OP1 126.9 97.8 59.9 REMARK 620 5 HOH A 304 O 90.7 64.9 156.3 135.1 REMARK 620 6 HOH A 311 O 149.5 80.5 121.5 75.5 61.3 REMARK 620 7 HOH A 322 O 110.8 133.9 88.6 110.2 69.4 72.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 22 OP1 REMARK 620 2 A A 78 OP1 105.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 219 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 25 OP1 REMARK 620 2 C B 40 O2 135.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 218 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 40 O2 REMARK 620 2 C B 25 OP1 132.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 61 O6 REMARK 620 2 HOH A 301 O 87.5 REMARK 620 3 HOH A 317 O 61.2 139.0 REMARK 620 4 HOH A 318 O 68.1 117.2 77.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 212 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 69 O4 REMARK 620 2 G A 70 O6 80.6 REMARK 620 3 U A 87 O4 97.5 75.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 211 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 88 OP1 REMARK 620 2 A A 89 OP1 96.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 312 O REMARK 620 2 HOH A 315 O 81.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 9 OP1 REMARK 620 2 G B 9 OP2 53.9 REMARK 620 3 A B 39 OP1 58.8 88.2 REMARK 620 4 U B 45 OP1 75.9 127.9 75.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 209 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 36 O4 REMARK 620 2 G B 61 O6 100.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 39 OP2 REMARK 620 2 C B 40 OP2 88.8 REMARK 620 3 C B 44 OP1 163.5 76.0 REMARK 620 4 U B 45 OP2 80.8 163.2 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 211 DBREF 6CC3 A 2 102 PDB 6CC3 6CC3 2 102 DBREF 6CC3 B 2 102 PDB 6CC3 6CC3 2 102 SEQRES 1 A 101 G A A A G G G G A G U A G SEQRES 2 A 101 C G U C G G G A A A C C G SEQRES 3 A 101 A A A C A A A G U C G A C SEQRES 4 A 101 A U A C U G U G A G G A A SEQRES 5 A 101 A C U C A C C G G C U U U SEQRES 6 A 101 G U U G A C A U A C G A A SEQRES 7 A 101 A G U A U G U U U A G C A SEQRES 8 A 101 A G A C C U U U C C SEQRES 1 B 101 G A A A G G G G A G U A G SEQRES 2 B 101 C G U C G G G A A A C C G SEQRES 3 B 101 A A A C A A A G U C G A C SEQRES 4 B 101 A U A C U G U G A G G A A SEQRES 5 B 101 A C U C A C C G G C U U U SEQRES 6 B 101 G U U G A C A U A C G A A SEQRES 7 B 101 A G U A U G U U U A G C A SEQRES 8 B 101 A G A C C U U U C C HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET MG A 208 1 HET MG A 209 1 HET MG A 210 1 HET MG A 211 1 HET MG A 212 1 HET MG A 213 1 HET MG A 214 1 HET MG A 215 1 HET MG A 216 1 HET GTP A 217 32 HET MG A 218 1 HET MG A 219 1 HET CD B 201 1 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET MG B 206 1 HET MG B 207 1 HET MG B 208 1 HET MG B 209 1 HET MG B 210 1 HET GTP B 211 32 HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 CD 12(CD 2+) FORMUL 10 MG 16(MG 2+) FORMUL 19 GTP 2(C10 H16 N5 O14 P3) FORMUL 33 HOH *45(H2 O) LINK P A A 3 O3' GTP A 217 1555 1555 1.57 LINK O6 G A 8 MG MG A 208 1555 1555 2.79 LINK OP1 G A 9 CD CD A 201 1555 1555 2.70 LINK OP1 G A 9 MG MG A 209 1555 1555 2.13 LINK N7 G A 21 CD CD A 203 1555 1555 2.66 LINK OP1 A A 22 CD CD A 206 1555 1555 2.62 LINK OP1 C A 25 MG MG A 219 1555 1555 1.93 LINK OP2 A A 39 CD CD A 201 1555 1555 2.57 LINK OP1 A A 39 MG MG A 209 1555 1555 2.25 LINK OP2 C A 40 CD CD A 201 1555 1555 2.53 LINK O2 C A 40 MG MG A 218 1555 1555 2.09 LINK OP1 C A 44 CD CD A 201 1555 1555 2.64 LINK O3' C A 44 MG MG A 209 1555 1555 2.82 LINK OP2 U A 45 CD CD A 201 1555 1555 2.61 LINK OP1 U A 45 MG MG A 209 1555 1555 2.03 LINK O6 G A 61 MG MG A 210 1555 1555 2.94 LINK O4 U A 69 MG MG A 212 1555 1555 2.79 LINK O6 G A 70 MG MG A 212 1555 1555 2.81 LINK OP1 A A 78 CD CD A 206 1555 2656 2.69 LINK O4 U A 87 MG MG A 212 1555 1555 2.85 LINK OP1 U A 88 MG MG A 211 1555 1555 2.45 LINK OP1 A A 89 MG MG A 211 1555 1555 2.89 LINK OP2 A A 89 MG MG A 215 1555 1555 2.83 LINK MG MG A 208 O HOH A 319 1555 1555 2.55 LINK MG MG A 209 O HOH A 304 1555 1555 2.42 LINK MG MG A 209 O HOH A 311 1555 1555 2.50 LINK MG MG A 209 O HOH A 322 1555 1555 2.27 LINK MG MG A 210 O HOH A 301 1555 1555 2.04 LINK MG MG A 210 O HOH A 317 1555 1555 2.36 LINK MG MG A 210 O HOH A 318 1555 1555 2.88 LINK MG MG A 213 O3B GTP A 217 1555 1555 2.88 LINK MG MG A 214 O HOH A 312 1555 1555 2.72 LINK MG MG A 214 O HOH A 315 1555 1555 2.95 LINK MG MG A 218 OP1 C B 25 1555 1555 1.97 LINK MG MG A 219 O2 C B 40 1555 1555 2.18 LINK OP1 G B 9 MG MG B 206 1555 1555 2.89 LINK OP2 G B 9 MG MG B 206 1555 1555 2.71 LINK OP2 A B 10 MG MG B 207 1555 1555 2.90 LINK O4 U B 36 MG MG B 209 1555 1555 2.87 LINK OP2 A B 39 CD CD B 202 1555 1555 2.59 LINK OP1 A B 39 MG MG B 206 1555 1555 2.56 LINK OP2 C B 40 CD CD B 202 1555 1555 2.58 LINK OP1 C B 44 CD CD B 202 1555 1555 2.69 LINK OP2 U B 45 CD CD B 202 1555 1555 2.58 LINK OP1 U B 45 MG MG B 206 1555 1555 2.86 LINK O6 G B 51 MG MG B 210 1555 1555 2.77 LINK O6 G B 61 MG MG B 209 1555 1555 2.79 SITE 1 AC1 6 G A 9 A A 39 C A 40 A A 41 SITE 2 AC1 6 C A 44 U A 45 SITE 1 AC2 2 G A 51 HOH A 307 SITE 1 AC3 5 G A 21 HOH A 303 HOH A 306 HOH A 308 SITE 2 AC3 5 HOH A 333 SITE 1 AC4 3 A A 13 G A 14 HOH A 316 SITE 1 AC5 1 G A 19 SITE 1 AC6 5 G A 21 A A 22 A A 52 A A 78 SITE 2 AC6 5 HOH A 305 SITE 1 AC7 3 A A 29 HOH A 326 HOH A 330 SITE 1 AC8 2 G A 8 HOH A 319 SITE 1 AC9 7 G A 9 A A 39 C A 44 U A 45 SITE 2 AC9 7 HOH A 304 HOH A 311 HOH A 322 SITE 1 AD1 4 G A 61 HOH A 301 HOH A 317 HOH A 318 SITE 1 AD2 3 U A 64 U A 88 A A 89 SITE 1 AD3 4 U A 69 G A 70 U A 86 U A 87 SITE 1 AD4 1 GTP A 217 SITE 1 AD5 3 G A 27 HOH A 312 HOH A 315 SITE 1 AD6 2 A A 89 G A 90 SITE 1 AD7 2 G A 77 A A 78 SITE 1 AD8 4 A A 3 C A 101 C A 102 MG A 213 SITE 1 AD9 2 C A 40 C B 25 SITE 1 AE1 3 A A 24 C A 25 C B 40 SITE 1 AE2 3 G B 19 G B 20 G B 21 SITE 1 AE3 6 G B 9 A B 39 C B 40 A B 41 SITE 2 AE3 6 C B 44 U B 45 SITE 1 AE4 3 C B 44 A B 54 HOH B 309 SITE 1 AE5 2 A B 13 G B 14 SITE 1 AE6 5 G B 21 HOH B 302 HOH B 303 HOH B 304 SITE 2 AE6 5 HOH B 310 SITE 1 AE7 4 G B 8 G B 9 A B 39 U B 45 SITE 1 AE8 2 A B 10 C B 37 SITE 1 AE9 1 G B 27 SITE 1 AF1 4 G B 35 U B 36 G B 61 G B 62 SITE 1 AF2 1 G B 51 SITE 1 AF3 3 A B 3 C B 96 C B 101 CRYST1 125.531 68.288 83.384 90.00 97.96 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007966 0.000000 0.001113 0.00000 SCALE2 0.000000 0.014644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012109 0.00000