data_6CC8 # _entry.id 6CC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CC8 pdb_00006cc8 10.2210/pdb6cc8/pdb WWPDB D_1000232534 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CC8 _pdbx_database_status.recvd_initial_deposition_date 2018-02-06 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, K.' 1 ? 'Tempel, W.' 2 ? 'Bountra, C.' 3 ? 'Arrowsmith, C.H.' 4 ? 'Edwards, A.M.' 5 ? 'Min, J.' 6 ? 'Structural Genomics Consortium (SGC)' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 286 _citation.language ? _citation.page_first 3240 _citation.page_last 3254 _citation.title 'Structural analyses reveal that MBD3 is a methylated CG binder.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/febs.14850 _citation.pdbx_database_id_PubMed 30980593 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, K.' 1 ? primary 'Lei, M.' 2 ? primary 'Wu, Z.' 3 ? primary 'Gan, B.' 4 ? primary 'Cheng, H.' 5 ? primary 'Li, Y.' 6 ? primary 'Min, J.' 7 ? # _cell.entry_id 6CC8 _cell.length_a 71.550 _cell.length_b 36.640 _cell.length_c 130.930 _cell.angle_alpha 90.00 _cell.angle_beta 92.77 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CC8 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 3' 8473.716 2 ? ? 'MBD domain (UNP residues 1-71)' ? 2 polymer syn 'methylated CpG DNA' 3677.419 4 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' 103.120 12 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding protein MBD3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSMERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLM GSMERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLM A,B ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DA)(5CM)(DG)(DT)(DT)(DG)(DG)(DC)' GCCAACGTTGGC C,D,E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 GLU n 1 5 ARG n 1 6 LYS n 1 7 ARG n 1 8 TRP n 1 9 GLU n 1 10 CYS n 1 11 PRO n 1 12 ALA n 1 13 LEU n 1 14 PRO n 1 15 GLN n 1 16 GLY n 1 17 TRP n 1 18 GLU n 1 19 ARG n 1 20 GLU n 1 21 GLU n 1 22 VAL n 1 23 PRO n 1 24 ARG n 1 25 ARG n 1 26 SER n 1 27 GLY n 1 28 LEU n 1 29 SER n 1 30 ALA n 1 31 GLY n 1 32 HIS n 1 33 ARG n 1 34 ASP n 1 35 VAL n 1 36 PHE n 1 37 TYR n 1 38 TYR n 1 39 SER n 1 40 PRO n 1 41 SER n 1 42 GLY n 1 43 LYS n 1 44 LYS n 1 45 PHE n 1 46 ARG n 1 47 SER n 1 48 LYS n 1 49 PRO n 1 50 GLN n 1 51 LEU n 1 52 ALA n 1 53 ARG n 1 54 TYR n 1 55 LEU n 1 56 GLY n 1 57 GLY n 1 58 SER n 1 59 MET n 1 60 ASP n 1 61 LEU n 1 62 SER n 1 63 THR n 1 64 PHE n 1 65 ASP n 1 66 PHE n 1 67 ARG n 1 68 THR n 1 69 GLY n 1 70 LYS n 1 71 MET n 1 72 LEU n 1 73 MET n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DA n 2 6 5CM n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 73 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MBD3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-GSTLIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details dodecanucleotide # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MBD3_HUMAN O95983 ? 1 MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLM 1 2 PDB 6CC8 6CC8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CC8 A 3 ? 73 ? O95983 1 ? 71 ? 1 71 2 1 6CC8 B 3 ? 73 ? O95983 1 ? 71 ? 1 71 3 2 6CC8 C 1 ? 12 ? 6CC8 1 ? 12 ? 1 12 4 2 6CC8 D 1 ? 12 ? 6CC8 1 ? 12 ? 1 12 5 2 6CC8 E 1 ? 12 ? 6CC8 1 ? 12 ? 1 12 6 2 6CC8 F 1 ? 12 ? 6CC8 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6CC8 GLY A 1 ? UNP O95983 ? ? 'expression tag' -1 1 1 6CC8 SER A 2 ? UNP O95983 ? ? 'expression tag' 0 2 2 6CC8 GLY B 1 ? UNP O95983 ? ? 'expression tag' -1 3 2 6CC8 SER B 2 ? UNP O95983 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CC8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.2 M sodium chloride, 0.1 M HEPES, 5% ethylene glycol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-10-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97923 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97923 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6CC8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.730 _reflns.d_resolution_high 1.950 _reflns.number_obs 25160 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.76100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.70 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6CC8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 23724 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.73 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.700 _refine.ls_number_reflns_R_free 1436 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 42.99 _refine.aniso_B[1][1] -0.54000 _refine.aniso_B[2][2] 0.80000 _refine.aniso_B[3][3] -0.27000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.06000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;MODEL WAS ORIGINALLY REFINED AGAINST DATA COLLECTED ON AN ISOMORPHOUS CRYSTAL. THAT STRUCTURE WAS SOLVED BY MOLECULAR REPLACEMENT USING PHASER AND MOLREP TO POSITION FIRST AND SECOND COPY OF THE COMPLEX, RESPECTIVELY. REFMAC WAS USED DURING INTERMEDIATE REFINEMENT. COOT WAS USED FOR INTERACTIVE MODEL BUILDING. MODEL GEOMETRY WAS ASSESSED ON THE MOLPROBITY SERVER. ; _refine.pdbx_starting_model 'PDB ENTRY 6C2K' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ;THIN RESOLUTION SHELLS (SFTOOLS) ; _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.156 _refine.overall_SU_ML 0.132 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.689 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1126 _refine_hist.pdbx_number_atoms_nucleic_acid 976 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 2178 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 35.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.016 ? 2258 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 1614 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.652 1.617 ? 3247 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.260 3.000 ? 3743 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.600 5.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.405 19.412 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.062 15.000 ? 197 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.330 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 292 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 1865 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 512 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.783 2.368 ? 570 'X-RAY DIFFRACTION' ? r_mcbond_other 1.783 2.364 ? 569 'X-RAY DIFFRACTION' ? r_mcangle_it 2.769 3.527 ? 710 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 1775 _refine_ls_shell.R_factor_R_work 0.3120 _refine_ls_shell.percent_reflns_obs 99.52 _refine_ls_shell.R_factor_R_free 0.3310 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 104 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 6CC8 _struct.title 'Crystal structure MBD3 MBD domain in complex with methylated CpG DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CC8 _struct_keywords.text 'Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 47 ? GLY A 56 ? SER A 45 GLY A 54 1 ? 10 HELX_P HELX_P2 AA2 SER B 47 ? GLY B 56 ? SER B 45 GLY B 54 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DA 5 "O3'" ? ? ? 1_555 C 5CM 6 P ? ? C DA 5 C 5CM 6 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale2 covale both ? C 5CM 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C 5CM 6 C DG 7 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? D DA 5 "O3'" ? ? ? 1_555 D 5CM 6 P ? ? D DA 5 D 5CM 6 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale4 covale both ? D 5CM 6 "O3'" ? ? ? 1_555 D DG 7 P ? ? D 5CM 6 D DG 7 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale5 covale both ? E DA 5 "O3'" ? ? ? 1_555 E 5CM 6 P ? ? E DA 5 E 5CM 6 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale6 covale both ? E 5CM 6 "O3'" ? ? ? 1_555 E DG 7 P ? ? E 5CM 6 E DG 7 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale7 covale both ? F DA 5 "O3'" ? ? ? 1_555 F 5CM 6 P ? ? F DA 5 F 5CM 6 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale8 covale both ? F 5CM 6 "O3'" ? ? ? 1_555 F DG 7 P ? ? F 5CM 6 F DG 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C 5CM 6 N3 ? ? ? 1_555 D DG 7 N1 ? ? C 5CM 6 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C 5CM 6 N4 ? ? ? 1_555 D DG 7 O6 ? ? C 5CM 6 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C 5CM 6 O2 ? ? ? 1_555 D DG 7 N2 ? ? C 5CM 6 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D 5CM 6 N3 ? ? C DG 7 D 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D 5CM 6 O2 ? ? C DG 7 D 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D 5CM 6 N4 ? ? C DG 7 D 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 8 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 8 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 1 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 2 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 2 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 2 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 10 N1 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 10 O6 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 10 N2 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E 5CM 6 N3 ? ? ? 1_555 F DG 7 N1 ? ? E 5CM 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E 5CM 6 N4 ? ? ? 1_555 F DG 7 O6 ? ? E 5CM 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E 5CM 6 O2 ? ? ? 1_555 F DG 7 N2 ? ? E 5CM 6 F DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DG 7 N1 ? ? ? 1_555 F 5CM 6 N3 ? ? E DG 7 F 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DG 7 N2 ? ? ? 1_555 F 5CM 6 O2 ? ? E DG 7 F 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DG 7 O6 ? ? ? 1_555 F 5CM 6 N4 ? ? E DG 7 F 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 9 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 9 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DG 10 N1 ? ? ? 1_555 F DC 3 N3 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 10 N2 ? ? ? 1_555 F DC 3 O2 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 10 O6 ? ? ? 1_555 F DC 3 N4 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 2 N3 ? ? E DG 11 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 2 O2 ? ? E DG 11 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 2 N4 ? ? E DG 11 F DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DC 12 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DC 12 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 12 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 12 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 6 ? GLU A 9 ? LYS A 4 GLU A 7 AA1 2 GLU A 18 ? PRO A 23 ? GLU A 16 PRO A 21 AA1 3 ARG A 33 ? TYR A 38 ? ARG A 31 TYR A 36 AA1 4 LYS A 44 ? PHE A 45 ? LYS A 42 PHE A 43 AA2 1 PHE A 64 ? ASP A 65 ? PHE A 62 ASP A 63 AA2 2 LYS A 70 ? MET A 71 ? LYS A 68 MET A 69 AA3 1 LYS B 6 ? GLU B 9 ? LYS B 4 GLU B 7 AA3 2 GLU B 18 ? PRO B 23 ? GLU B 16 PRO B 21 AA3 3 ARG B 33 ? TYR B 38 ? ARG B 31 TYR B 36 AA3 4 LYS B 44 ? PHE B 45 ? LYS B 42 PHE B 43 AA4 1 PHE B 64 ? ASP B 65 ? PHE B 62 ASP B 63 AA4 2 LYS B 70 ? MET B 71 ? LYS B 68 MET B 69 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 8 ? N TRP A 6 O ARG A 19 ? O ARG A 17 AA1 2 3 N GLU A 18 ? N GLU A 16 O TYR A 38 ? O TYR A 36 AA1 3 4 N TYR A 37 ? N TYR A 35 O PHE A 45 ? O PHE A 43 AA2 1 2 N ASP A 65 ? N ASP A 63 O LYS A 70 ? O LYS A 68 AA3 1 2 N TRP B 8 ? N TRP B 6 O ARG B 19 ? O ARG B 17 AA3 2 3 N GLU B 20 ? N GLU B 18 O PHE B 36 ? O PHE B 34 AA3 3 4 N TYR B 37 ? N TYR B 35 O PHE B 45 ? O PHE B 43 AA4 1 2 N ASP B 65 ? N ASP B 63 O LYS B 70 ? O LYS B 68 # _atom_sites.entry_id 6CC8 _atom_sites.fract_transf_matrix[1][1] 0.013976 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000676 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027293 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007647 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 GLU 4 2 2 GLU GLU A . n A 1 5 ARG 5 3 3 ARG ARG A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 ARG 7 5 5 ARG ARG A . n A 1 8 TRP 8 6 6 TRP TRP A . n A 1 9 GLU 9 7 7 GLU GLU A . n A 1 10 CYS 10 8 8 CYS CYS A . n A 1 11 PRO 11 9 9 PRO PRO A . n A 1 12 ALA 12 10 10 ALA ALA A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 PRO 14 12 12 PRO PRO A . n A 1 15 GLN 15 13 13 GLN GLN A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 TRP 17 15 15 TRP TRP A . n A 1 18 GLU 18 16 16 GLU GLU A . n A 1 19 ARG 19 17 17 ARG ARG A . n A 1 20 GLU 20 18 18 GLU GLU A . n A 1 21 GLU 21 19 19 GLU GLU A . n A 1 22 VAL 22 20 20 VAL VAL A . n A 1 23 PRO 23 21 21 PRO PRO A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 ARG 25 23 23 ARG ARG A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 GLY 27 25 25 GLY GLY A . n A 1 28 LEU 28 26 26 LEU LEU A . n A 1 29 SER 29 27 27 SER SER A . n A 1 30 ALA 30 28 28 ALA ALA A . n A 1 31 GLY 31 29 29 GLY GLY A . n A 1 32 HIS 32 30 30 HIS HIS A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 ASP 34 32 32 ASP ASP A . n A 1 35 VAL 35 33 33 VAL VAL A . n A 1 36 PHE 36 34 34 PHE PHE A . n A 1 37 TYR 37 35 35 TYR TYR A . n A 1 38 TYR 38 36 36 TYR TYR A . n A 1 39 SER 39 37 37 SER SER A . n A 1 40 PRO 40 38 38 PRO PRO A . n A 1 41 SER 41 39 39 SER SER A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 LYS 44 42 42 LYS LYS A . n A 1 45 PHE 45 43 43 PHE PHE A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 SER 47 45 45 SER SER A . n A 1 48 LYS 48 46 46 LYS LYS A . n A 1 49 PRO 49 47 47 PRO PRO A . n A 1 50 GLN 50 48 48 GLN GLN A . n A 1 51 LEU 51 49 49 LEU LEU A . n A 1 52 ALA 52 50 50 ALA ALA A . n A 1 53 ARG 53 51 51 ARG ARG A . n A 1 54 TYR 54 52 52 TYR TYR A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 GLY 56 54 54 GLY GLY A . n A 1 57 GLY 57 55 55 GLY GLY A . n A 1 58 SER 58 56 56 SER SER A . n A 1 59 MET 59 57 57 MET MET A . n A 1 60 ASP 60 58 58 ASP ASP A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 SER 62 60 60 SER SER A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 PHE 64 62 62 PHE PHE A . n A 1 65 ASP 65 63 63 ASP ASP A . n A 1 66 PHE 66 64 64 PHE PHE A . n A 1 67 ARG 67 65 65 ARG ARG A . n A 1 68 THR 68 66 66 THR THR A . n A 1 69 GLY 69 67 67 GLY GLY A . n A 1 70 LYS 70 68 68 LYS LYS A . n A 1 71 MET 71 69 69 MET MET A . n A 1 72 LEU 72 70 70 LEU LEU A . n A 1 73 MET 73 71 71 MET MET A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 SER 2 0 ? ? ? B . n B 1 3 MET 3 1 1 MET MET B . n B 1 4 GLU 4 2 2 GLU GLU B . n B 1 5 ARG 5 3 3 ARG ARG B . n B 1 6 LYS 6 4 4 LYS LYS B . n B 1 7 ARG 7 5 5 ARG ARG B . n B 1 8 TRP 8 6 6 TRP TRP B . n B 1 9 GLU 9 7 7 GLU GLU B . n B 1 10 CYS 10 8 8 CYS CYS B . n B 1 11 PRO 11 9 9 PRO PRO B . n B 1 12 ALA 12 10 10 ALA ALA B . n B 1 13 LEU 13 11 11 LEU LEU B . n B 1 14 PRO 14 12 12 PRO PRO B . n B 1 15 GLN 15 13 13 GLN GLN B . n B 1 16 GLY 16 14 14 GLY GLY B . n B 1 17 TRP 17 15 15 TRP TRP B . n B 1 18 GLU 18 16 16 GLU GLU B . n B 1 19 ARG 19 17 17 ARG ARG B . n B 1 20 GLU 20 18 18 GLU GLU B . n B 1 21 GLU 21 19 19 GLU GLU B . n B 1 22 VAL 22 20 20 VAL VAL B . n B 1 23 PRO 23 21 21 PRO PRO B . n B 1 24 ARG 24 22 22 ARG ARG B . n B 1 25 ARG 25 23 23 ARG ARG B . n B 1 26 SER 26 24 24 SER SER B . n B 1 27 GLY 27 25 25 GLY GLY B . n B 1 28 LEU 28 26 26 LEU LEU B . n B 1 29 SER 29 27 27 SER SER B . n B 1 30 ALA 30 28 28 ALA ALA B . n B 1 31 GLY 31 29 29 GLY GLY B . n B 1 32 HIS 32 30 30 HIS HIS B . n B 1 33 ARG 33 31 31 ARG ARG B . n B 1 34 ASP 34 32 32 ASP ASP B . n B 1 35 VAL 35 33 33 VAL VAL B . n B 1 36 PHE 36 34 34 PHE PHE B . n B 1 37 TYR 37 35 35 TYR TYR B . n B 1 38 TYR 38 36 36 TYR TYR B . n B 1 39 SER 39 37 37 SER SER B . n B 1 40 PRO 40 38 38 PRO PRO B . n B 1 41 SER 41 39 39 SER SER B . n B 1 42 GLY 42 40 40 GLY GLY B . n B 1 43 LYS 43 41 41 LYS LYS B . n B 1 44 LYS 44 42 42 LYS LYS B . n B 1 45 PHE 45 43 43 PHE PHE B . n B 1 46 ARG 46 44 44 ARG ARG B . n B 1 47 SER 47 45 45 SER SER B . n B 1 48 LYS 48 46 46 LYS LYS B . n B 1 49 PRO 49 47 47 PRO PRO B . n B 1 50 GLN 50 48 48 GLN GLN B . n B 1 51 LEU 51 49 49 LEU LEU B . n B 1 52 ALA 52 50 50 ALA ALA B . n B 1 53 ARG 53 51 51 ARG ARG B . n B 1 54 TYR 54 52 52 TYR TYR B . n B 1 55 LEU 55 53 53 LEU LEU B . n B 1 56 GLY 56 54 54 GLY GLY B . n B 1 57 GLY 57 55 55 GLY GLY B . n B 1 58 SER 58 56 56 SER SER B . n B 1 59 MET 59 57 57 MET MET B . n B 1 60 ASP 60 58 58 ASP ASP B . n B 1 61 LEU 61 59 59 LEU LEU B . n B 1 62 SER 62 60 60 SER SER B . n B 1 63 THR 63 61 61 THR THR B . n B 1 64 PHE 64 62 62 PHE PHE B . n B 1 65 ASP 65 63 63 ASP ASP B . n B 1 66 PHE 66 64 64 PHE PHE B . n B 1 67 ARG 67 65 65 ARG ARG B . n B 1 68 THR 68 66 66 THR THR B . n B 1 69 GLY 69 67 67 GLY GLY B . n B 1 70 LYS 70 68 68 LYS LYS B . n B 1 71 MET 71 69 69 MET MET B . n B 1 72 LEU 72 70 70 LEU LEU B . n B 1 73 MET 73 71 71 MET MET B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 5CM 6 6 6 5CM 5CM C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DG 10 10 10 DG DG C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DC 12 12 12 DC DC C . n D 2 1 DG 1 1 1 DG DG D . n D 2 2 DC 2 2 2 DC DC D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DA 4 4 4 DA DA D . n D 2 5 DA 5 5 5 DA DA D . n D 2 6 5CM 6 6 6 5CM 5CM D . n D 2 7 DG 7 7 7 DG DG D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DT 9 9 9 DT DT D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DG 11 11 11 DG DG D . n D 2 12 DC 12 12 12 DC DC D . n E 2 1 DG 1 1 1 DG DG E . n E 2 2 DC 2 2 2 DC DC E . n E 2 3 DC 3 3 3 DC DC E . n E 2 4 DA 4 4 4 DA DA E . n E 2 5 DA 5 5 5 DA DA E . n E 2 6 5CM 6 6 6 5CM 5CM E . n E 2 7 DG 7 7 7 DG DG E . n E 2 8 DT 8 8 8 DT DT E . n E 2 9 DT 9 9 9 DT DT E . n E 2 10 DG 10 10 10 DG DG E . n E 2 11 DG 11 11 11 DG DG E . n E 2 12 DC 12 12 12 DC DC E . n F 2 1 DG 1 1 1 DG DG F . n F 2 2 DC 2 2 2 DC DC F . n F 2 3 DC 3 3 3 DC DC F . n F 2 4 DA 4 4 4 DA DA F . n F 2 5 DA 5 5 5 DA DA F . n F 2 6 5CM 6 6 6 5CM 5CM F . n F 2 7 DG 7 7 7 DG DG F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DT 9 9 9 DT DT F . n F 2 10 DG 10 10 10 DG DG F . n F 2 11 DG 11 11 11 DG DG F . n F 2 12 DC 12 12 12 DC DC F . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 UNX 1 101 101 UNX UNX A . H 3 UNX 1 102 102 UNX UNX A . I 3 UNX 1 103 103 UNX UNX A . J 3 UNX 1 101 101 UNX UNX B . K 3 UNX 1 102 102 UNX UNX B . L 3 UNX 1 103 103 UNX UNX B . M 3 UNX 1 104 101 UNX UNX B . N 3 UNX 1 101 101 UNX UNX C . O 3 UNX 1 102 102 UNX UNX C . P 3 UNX 1 101 101 UNX UNX E . Q 3 UNX 1 102 102 UNX UNX E . R 3 UNX 1 101 111 UNX UNK F . S 4 HOH 1 201 201 HOH HOH A . S 4 HOH 2 202 202 HOH HOH A . S 4 HOH 3 203 203 HOH HOH A . S 4 HOH 4 204 204 HOH HOH A . S 4 HOH 5 205 205 HOH HOH A . S 4 HOH 6 206 206 HOH HOH A . S 4 HOH 7 207 207 HOH HOH A . S 4 HOH 8 208 208 HOH HOH A . S 4 HOH 9 209 209 HOH HOH A . S 4 HOH 10 210 210 HOH HOH A . T 4 HOH 1 201 201 HOH HOH B . T 4 HOH 2 202 202 HOH HOH B . T 4 HOH 3 203 203 HOH HOH B . T 4 HOH 4 204 204 HOH HOH B . T 4 HOH 5 205 205 HOH HOH B . T 4 HOH 6 206 206 HOH HOH B . T 4 HOH 7 207 207 HOH HOH B . T 4 HOH 8 208 208 HOH HOH B . T 4 HOH 9 209 209 HOH HOH B . T 4 HOH 10 210 210 HOH HOH B . T 4 HOH 11 211 211 HOH HOH B . T 4 HOH 12 212 212 HOH HOH B . T 4 HOH 13 213 213 HOH HOH B . T 4 HOH 14 214 214 HOH HOH B . T 4 HOH 15 215 215 HOH HOH B . U 4 HOH 1 201 201 HOH HOH C . U 4 HOH 2 202 202 HOH HOH C . U 4 HOH 3 203 203 HOH HOH C . U 4 HOH 4 204 204 HOH HOH C . U 4 HOH 5 205 205 HOH HOH C . U 4 HOH 6 206 206 HOH HOH C . U 4 HOH 7 207 207 HOH HOH C . U 4 HOH 8 208 208 HOH HOH C . U 4 HOH 9 209 209 HOH HOH C . U 4 HOH 10 210 210 HOH HOH C . U 4 HOH 11 211 211 HOH HOH C . V 4 HOH 1 101 101 HOH HOH D . V 4 HOH 2 102 102 HOH HOH D . V 4 HOH 3 103 103 HOH HOH D . V 4 HOH 4 104 104 HOH HOH D . V 4 HOH 5 105 105 HOH HOH D . V 4 HOH 6 106 106 HOH HOH D . V 4 HOH 7 107 107 HOH HOH D . V 4 HOH 8 108 108 HOH HOH D . W 4 HOH 1 201 201 HOH HOH E . W 4 HOH 2 202 202 HOH HOH E . W 4 HOH 3 203 203 HOH HOH E . W 4 HOH 4 204 204 HOH HOH E . W 4 HOH 5 205 205 HOH HOH E . W 4 HOH 6 206 206 HOH HOH E . W 4 HOH 7 207 207 HOH HOH E . W 4 HOH 8 208 208 HOH HOH E . W 4 HOH 9 209 209 HOH HOH E . W 4 HOH 10 210 210 HOH HOH E . W 4 HOH 11 211 211 HOH HOH E . X 4 HOH 1 201 102 HOH HOH F . X 4 HOH 2 202 103 HOH HOH F . X 4 HOH 3 203 104 HOH HOH F . X 4 HOH 4 204 105 HOH HOH F . X 4 HOH 5 205 106 HOH HOH F . X 4 HOH 6 206 107 HOH HOH F . X 4 HOH 7 207 108 HOH HOH F . X 4 HOH 8 208 109 HOH HOH F . X 4 HOH 9 209 110 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G,H,I,N,O,S,U,V 2 1 B,E,F,J,K,L,M,P,Q,R,T,W,X # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3820 ? 1 MORE -2 ? 1 'SSA (A^2)' 7610 ? 2 'ABSA (A^2)' 3790 ? 2 MORE -3 ? 2 'SSA (A^2)' 7710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-04 2 'Structure model' 2 0 2019-05-22 3 'Structure model' 2 1 2019-09-04 4 'Structure model' 2 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Non-polymer description' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Database references' 11 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_nonpoly_scheme 8 2 'Structure model' struct_asym 9 3 'Structure model' citation 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' database_2 13 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_comp_id' 2 2 'Structure model' '_atom_site.label_comp_id' 3 2 'Structure model' '_atom_site.label_entity_id' 4 2 'Structure model' '_chem_comp.formula' 5 2 'Structure model' '_chem_comp.formula_weight' 6 2 'Structure model' '_chem_comp.id' 7 2 'Structure model' '_chem_comp.mon_nstd_flag' 8 2 'Structure model' '_chem_comp.name' 9 2 'Structure model' '_chem_comp.type' 10 2 'Structure model' '_citation.country' 11 2 'Structure model' '_citation.journal_abbrev' 12 2 'Structure model' '_citation.journal_id_CSD' 13 2 'Structure model' '_citation.journal_id_ISSN' 14 2 'Structure model' '_citation.pdbx_database_id_DOI' 15 2 'Structure model' '_citation.pdbx_database_id_PubMed' 16 2 'Structure model' '_citation.title' 17 2 'Structure model' '_citation.year' 18 2 'Structure model' '_pdbx_nonpoly_scheme.entity_id' 19 2 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 20 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 21 2 'Structure model' '_struct_asym.entity_id' 22 3 'Structure model' '_citation.journal_volume' 23 3 'Structure model' '_citation.page_first' 24 3 'Structure model' '_citation.page_last' 25 4 'Structure model' '_database_2.pdbx_DOI' 26 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -23.4294 -4.7085 54.8601 0.2142 0.1782 0.0210 0.0107 0.0135 0.0002 2.4744 3.5152 4.4811 0.3020 -0.7392 -2.0089 0.0083 -0.1273 -0.1777 0.1344 0.0527 0.0710 0.2197 -0.3109 -0.0610 'X-RAY DIFFRACTION' 2 ? refined -20.3097 6.7967 10.3602 0.1920 0.1434 0.0274 -0.0224 0.0285 0.0000 2.7592 3.1747 4.3792 -0.6027 0.6383 -1.7675 0.0461 0.1226 0.2067 -0.1806 0.0695 0.0699 -0.2310 -0.1989 -0.1155 'X-RAY DIFFRACTION' 3 ? refined -18.8825 8.2276 46.4850 0.1922 0.2258 0.1501 0.0549 0.0435 0.0091 3.9286 4.5481 1.6146 -3.6834 -0.2993 -0.3219 0.0020 0.0496 0.3829 -0.1249 -0.0613 -0.1461 -0.0081 0.0014 0.0593 'X-RAY DIFFRACTION' 4 ? refined -18.8107 7.3695 45.1612 0.1741 0.2159 0.1161 0.0692 0.0970 0.0179 6.2491 2.4422 1.7277 -1.5107 1.4651 0.3652 0.0155 0.2951 0.3455 -0.0277 -0.1512 -0.1632 -0.0189 0.0087 0.1357 'X-RAY DIFFRACTION' 5 ? refined -15.9889 -6.1412 18.9401 0.1166 0.1827 0.1574 -0.0667 -0.0040 -0.0130 3.8699 4.1274 2.0485 3.2512 0.4073 -0.5999 -0.0562 -0.0091 -0.4305 0.0020 -0.0204 -0.1255 -0.0089 0.0276 0.0766 'X-RAY DIFFRACTION' 6 ? refined -15.8663 -5.3088 20.2656 0.1267 0.1970 0.1300 -0.0600 -0.0637 0.0069 6.1252 3.2210 1.7577 2.1094 -1.2738 0.0394 0.1021 -0.3004 -0.2897 0.0558 -0.1164 -0.0868 0.0564 0.0617 0.0144 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 71 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 71 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 ? ? C 12 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 1 ? ? D 12 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 1 ? ? E 12 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 1 ? ? F 12 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.27 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 3 CG 2 1 Y 1 A MET 1 ? SD ? A MET 3 SD 3 1 Y 1 A MET 1 ? CE ? A MET 3 CE 4 1 Y 1 A GLU 2 ? CG ? A GLU 4 CG 5 1 Y 1 A GLU 2 ? CD ? A GLU 4 CD 6 1 Y 1 A GLU 2 ? OE1 ? A GLU 4 OE1 7 1 Y 1 A GLU 2 ? OE2 ? A GLU 4 OE2 8 1 Y 1 A LYS 4 ? CE ? A LYS 6 CE 9 1 Y 1 A LYS 4 ? NZ ? A LYS 6 NZ 10 1 Y 1 A GLU 7 ? CG ? A GLU 9 CG 11 1 Y 1 A GLU 7 ? CD ? A GLU 9 CD 12 1 Y 1 A GLU 7 ? OE1 ? A GLU 9 OE1 13 1 Y 1 A GLU 7 ? OE2 ? A GLU 9 OE2 14 1 Y 1 A GLN 13 ? CG ? A GLN 15 CG 15 1 Y 1 A GLN 13 ? CD ? A GLN 15 CD 16 1 Y 1 A GLN 13 ? OE1 ? A GLN 15 OE1 17 1 Y 1 A GLN 13 ? NE2 ? A GLN 15 NE2 18 1 Y 1 A LEU 26 ? CD1 ? A LEU 28 CD1 19 1 Y 1 A LEU 26 ? CD2 ? A LEU 28 CD2 20 1 Y 1 A LYS 41 ? NZ ? A LYS 43 NZ 21 1 Y 1 A LEU 53 ? CD1 ? A LEU 55 CD1 22 1 Y 1 A LEU 53 ? CD2 ? A LEU 55 CD2 23 1 Y 1 B MET 1 ? CG ? B MET 3 CG 24 1 Y 1 B MET 1 ? SD ? B MET 3 SD 25 1 Y 1 B MET 1 ? CE ? B MET 3 CE 26 1 Y 1 B GLU 2 ? CG ? B GLU 4 CG 27 1 Y 1 B GLU 2 ? CD ? B GLU 4 CD 28 1 Y 1 B GLU 2 ? OE1 ? B GLU 4 OE1 29 1 Y 1 B GLU 2 ? OE2 ? B GLU 4 OE2 30 1 Y 1 B GLU 7 ? CG ? B GLU 9 CG 31 1 Y 1 B GLU 7 ? CD ? B GLU 9 CD 32 1 Y 1 B GLU 7 ? OE1 ? B GLU 9 OE1 33 1 Y 1 B GLU 7 ? OE2 ? B GLU 9 OE2 34 1 Y 1 B GLN 13 ? CD ? B GLN 15 CD 35 1 Y 1 B GLN 13 ? OE1 ? B GLN 15 OE1 36 1 Y 1 B GLN 13 ? NE2 ? B GLN 15 NE2 37 1 Y 1 B ARG 23 ? CG ? B ARG 25 CG 38 1 Y 1 B ARG 23 ? CD ? B ARG 25 CD 39 1 Y 1 B ARG 23 ? NE ? B ARG 25 NE 40 1 Y 1 B ARG 23 ? CZ ? B ARG 25 CZ 41 1 Y 1 B ARG 23 ? NH1 ? B ARG 25 NH1 42 1 Y 1 B ARG 23 ? NH2 ? B ARG 25 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 B GLY -1 ? B GLY 1 4 1 Y 1 B SER 0 ? B SER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASP N N N N 78 ASP CA C N S 79 ASP C C N N 80 ASP O O N N 81 ASP CB C N N 82 ASP CG C N N 83 ASP OD1 O N N 84 ASP OD2 O N N 85 ASP OXT O N N 86 ASP H H N N 87 ASP H2 H N N 88 ASP HA H N N 89 ASP HB2 H N N 90 ASP HB3 H N N 91 ASP HD2 H N N 92 ASP HXT H N N 93 CYS N N N N 94 CYS CA C N R 95 CYS C C N N 96 CYS O O N N 97 CYS CB C N N 98 CYS SG S N N 99 CYS OXT O N N 100 CYS H H N N 101 CYS H2 H N N 102 CYS HA H N N 103 CYS HB2 H N N 104 CYS HB3 H N N 105 CYS HG H N N 106 CYS HXT H N N 107 DA OP3 O N N 108 DA P P N N 109 DA OP1 O N N 110 DA OP2 O N N 111 DA "O5'" O N N 112 DA "C5'" C N N 113 DA "C4'" C N R 114 DA "O4'" O N N 115 DA "C3'" C N S 116 DA "O3'" O N N 117 DA "C2'" C N N 118 DA "C1'" C N R 119 DA N9 N Y N 120 DA C8 C Y N 121 DA N7 N Y N 122 DA C5 C Y N 123 DA C6 C Y N 124 DA N6 N N N 125 DA N1 N Y N 126 DA C2 C Y N 127 DA N3 N Y N 128 DA C4 C Y N 129 DA HOP3 H N N 130 DA HOP2 H N N 131 DA "H5'" H N N 132 DA "H5''" H N N 133 DA "H4'" H N N 134 DA "H3'" H N N 135 DA "HO3'" H N N 136 DA "H2'" H N N 137 DA "H2''" H N N 138 DA "H1'" H N N 139 DA H8 H N N 140 DA H61 H N N 141 DA H62 H N N 142 DA H2 H N N 143 DC OP3 O N N 144 DC P P N N 145 DC OP1 O N N 146 DC OP2 O N N 147 DC "O5'" O N N 148 DC "C5'" C N N 149 DC "C4'" C N R 150 DC "O4'" O N N 151 DC "C3'" C N S 152 DC "O3'" O N N 153 DC "C2'" C N N 154 DC "C1'" C N R 155 DC N1 N N N 156 DC C2 C N N 157 DC O2 O N N 158 DC N3 N N N 159 DC C4 C N N 160 DC N4 N N N 161 DC C5 C N N 162 DC C6 C N N 163 DC HOP3 H N N 164 DC HOP2 H N N 165 DC "H5'" H N N 166 DC "H5''" H N N 167 DC "H4'" H N N 168 DC "H3'" H N N 169 DC "HO3'" H N N 170 DC "H2'" H N N 171 DC "H2''" H N N 172 DC "H1'" H N N 173 DC H41 H N N 174 DC H42 H N N 175 DC H5 H N N 176 DC H6 H N N 177 DG OP3 O N N 178 DG P P N N 179 DG OP1 O N N 180 DG OP2 O N N 181 DG "O5'" O N N 182 DG "C5'" C N N 183 DG "C4'" C N R 184 DG "O4'" O N N 185 DG "C3'" C N S 186 DG "O3'" O N N 187 DG "C2'" C N N 188 DG "C1'" C N R 189 DG N9 N Y N 190 DG C8 C Y N 191 DG N7 N Y N 192 DG C5 C Y N 193 DG C6 C N N 194 DG O6 O N N 195 DG N1 N N N 196 DG C2 C N N 197 DG N2 N N N 198 DG N3 N N N 199 DG C4 C Y N 200 DG HOP3 H N N 201 DG HOP2 H N N 202 DG "H5'" H N N 203 DG "H5''" H N N 204 DG "H4'" H N N 205 DG "H3'" H N N 206 DG "HO3'" H N N 207 DG "H2'" H N N 208 DG "H2''" H N N 209 DG "H1'" H N N 210 DG H8 H N N 211 DG H1 H N N 212 DG H21 H N N 213 DG H22 H N N 214 DT OP3 O N N 215 DT P P N N 216 DT OP1 O N N 217 DT OP2 O N N 218 DT "O5'" O N N 219 DT "C5'" C N N 220 DT "C4'" C N R 221 DT "O4'" O N N 222 DT "C3'" C N S 223 DT "O3'" O N N 224 DT "C2'" C N N 225 DT "C1'" C N R 226 DT N1 N N N 227 DT C2 C N N 228 DT O2 O N N 229 DT N3 N N N 230 DT C4 C N N 231 DT O4 O N N 232 DT C5 C N N 233 DT C7 C N N 234 DT C6 C N N 235 DT HOP3 H N N 236 DT HOP2 H N N 237 DT "H5'" H N N 238 DT "H5''" H N N 239 DT "H4'" H N N 240 DT "H3'" H N N 241 DT "HO3'" H N N 242 DT "H2'" H N N 243 DT "H2''" H N N 244 DT "H1'" H N N 245 DT H3 H N N 246 DT H71 H N N 247 DT H72 H N N 248 DT H73 H N N 249 DT H6 H N N 250 GLN N N N N 251 GLN CA C N S 252 GLN C C N N 253 GLN O O N N 254 GLN CB C N N 255 GLN CG C N N 256 GLN CD C N N 257 GLN OE1 O N N 258 GLN NE2 N N N 259 GLN OXT O N N 260 GLN H H N N 261 GLN H2 H N N 262 GLN HA H N N 263 GLN HB2 H N N 264 GLN HB3 H N N 265 GLN HG2 H N N 266 GLN HG3 H N N 267 GLN HE21 H N N 268 GLN HE22 H N N 269 GLN HXT H N N 270 GLU N N N N 271 GLU CA C N S 272 GLU C C N N 273 GLU O O N N 274 GLU CB C N N 275 GLU CG C N N 276 GLU CD C N N 277 GLU OE1 O N N 278 GLU OE2 O N N 279 GLU OXT O N N 280 GLU H H N N 281 GLU H2 H N N 282 GLU HA H N N 283 GLU HB2 H N N 284 GLU HB3 H N N 285 GLU HG2 H N N 286 GLU HG3 H N N 287 GLU HE2 H N N 288 GLU HXT H N N 289 GLY N N N N 290 GLY CA C N N 291 GLY C C N N 292 GLY O O N N 293 GLY OXT O N N 294 GLY H H N N 295 GLY H2 H N N 296 GLY HA2 H N N 297 GLY HA3 H N N 298 GLY HXT H N N 299 HIS N N N N 300 HIS CA C N S 301 HIS C C N N 302 HIS O O N N 303 HIS CB C N N 304 HIS CG C Y N 305 HIS ND1 N Y N 306 HIS CD2 C Y N 307 HIS CE1 C Y N 308 HIS NE2 N Y N 309 HIS OXT O N N 310 HIS H H N N 311 HIS H2 H N N 312 HIS HA H N N 313 HIS HB2 H N N 314 HIS HB3 H N N 315 HIS HD1 H N N 316 HIS HD2 H N N 317 HIS HE1 H N N 318 HIS HE2 H N N 319 HIS HXT H N N 320 HOH O O N N 321 HOH H1 H N N 322 HOH H2 H N N 323 LEU N N N N 324 LEU CA C N S 325 LEU C C N N 326 LEU O O N N 327 LEU CB C N N 328 LEU CG C N N 329 LEU CD1 C N N 330 LEU CD2 C N N 331 LEU OXT O N N 332 LEU H H N N 333 LEU H2 H N N 334 LEU HA H N N 335 LEU HB2 H N N 336 LEU HB3 H N N 337 LEU HG H N N 338 LEU HD11 H N N 339 LEU HD12 H N N 340 LEU HD13 H N N 341 LEU HD21 H N N 342 LEU HD22 H N N 343 LEU HD23 H N N 344 LEU HXT H N N 345 LYS N N N N 346 LYS CA C N S 347 LYS C C N N 348 LYS O O N N 349 LYS CB C N N 350 LYS CG C N N 351 LYS CD C N N 352 LYS CE C N N 353 LYS NZ N N N 354 LYS OXT O N N 355 LYS H H N N 356 LYS H2 H N N 357 LYS HA H N N 358 LYS HB2 H N N 359 LYS HB3 H N N 360 LYS HG2 H N N 361 LYS HG3 H N N 362 LYS HD2 H N N 363 LYS HD3 H N N 364 LYS HE2 H N N 365 LYS HE3 H N N 366 LYS HZ1 H N N 367 LYS HZ2 H N N 368 LYS HZ3 H N N 369 LYS HXT H N N 370 MET N N N N 371 MET CA C N S 372 MET C C N N 373 MET O O N N 374 MET CB C N N 375 MET CG C N N 376 MET SD S N N 377 MET CE C N N 378 MET OXT O N N 379 MET H H N N 380 MET H2 H N N 381 MET HA H N N 382 MET HB2 H N N 383 MET HB3 H N N 384 MET HG2 H N N 385 MET HG3 H N N 386 MET HE1 H N N 387 MET HE2 H N N 388 MET HE3 H N N 389 MET HXT H N N 390 PHE N N N N 391 PHE CA C N S 392 PHE C C N N 393 PHE O O N N 394 PHE CB C N N 395 PHE CG C Y N 396 PHE CD1 C Y N 397 PHE CD2 C Y N 398 PHE CE1 C Y N 399 PHE CE2 C Y N 400 PHE CZ C Y N 401 PHE OXT O N N 402 PHE H H N N 403 PHE H2 H N N 404 PHE HA H N N 405 PHE HB2 H N N 406 PHE HB3 H N N 407 PHE HD1 H N N 408 PHE HD2 H N N 409 PHE HE1 H N N 410 PHE HE2 H N N 411 PHE HZ H N N 412 PHE HXT H N N 413 PRO N N N N 414 PRO CA C N S 415 PRO C C N N 416 PRO O O N N 417 PRO CB C N N 418 PRO CG C N N 419 PRO CD C N N 420 PRO OXT O N N 421 PRO H H N N 422 PRO HA H N N 423 PRO HB2 H N N 424 PRO HB3 H N N 425 PRO HG2 H N N 426 PRO HG3 H N N 427 PRO HD2 H N N 428 PRO HD3 H N N 429 PRO HXT H N N 430 SER N N N N 431 SER CA C N S 432 SER C C N N 433 SER O O N N 434 SER CB C N N 435 SER OG O N N 436 SER OXT O N N 437 SER H H N N 438 SER H2 H N N 439 SER HA H N N 440 SER HB2 H N N 441 SER HB3 H N N 442 SER HG H N N 443 SER HXT H N N 444 THR N N N N 445 THR CA C N S 446 THR C C N N 447 THR O O N N 448 THR CB C N R 449 THR OG1 O N N 450 THR CG2 C N N 451 THR OXT O N N 452 THR H H N N 453 THR H2 H N N 454 THR HA H N N 455 THR HB H N N 456 THR HG1 H N N 457 THR HG21 H N N 458 THR HG22 H N N 459 THR HG23 H N N 460 THR HXT H N N 461 TRP N N N N 462 TRP CA C N S 463 TRP C C N N 464 TRP O O N N 465 TRP CB C N N 466 TRP CG C Y N 467 TRP CD1 C Y N 468 TRP CD2 C Y N 469 TRP NE1 N Y N 470 TRP CE2 C Y N 471 TRP CE3 C Y N 472 TRP CZ2 C Y N 473 TRP CZ3 C Y N 474 TRP CH2 C Y N 475 TRP OXT O N N 476 TRP H H N N 477 TRP H2 H N N 478 TRP HA H N N 479 TRP HB2 H N N 480 TRP HB3 H N N 481 TRP HD1 H N N 482 TRP HE1 H N N 483 TRP HE3 H N N 484 TRP HZ2 H N N 485 TRP HZ3 H N N 486 TRP HH2 H N N 487 TRP HXT H N N 488 TYR N N N N 489 TYR CA C N S 490 TYR C C N N 491 TYR O O N N 492 TYR CB C N N 493 TYR CG C Y N 494 TYR CD1 C Y N 495 TYR CD2 C Y N 496 TYR CE1 C Y N 497 TYR CE2 C Y N 498 TYR CZ C Y N 499 TYR OH O N N 500 TYR OXT O N N 501 TYR H H N N 502 TYR H2 H N N 503 TYR HA H N N 504 TYR HB2 H N N 505 TYR HB3 H N N 506 TYR HD1 H N N 507 TYR HD2 H N N 508 TYR HE1 H N N 509 TYR HE2 H N N 510 TYR HH H N N 511 TYR HXT H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASP N CA sing N N 77 ASP N H sing N N 78 ASP N H2 sing N N 79 ASP CA C sing N N 80 ASP CA CB sing N N 81 ASP CA HA sing N N 82 ASP C O doub N N 83 ASP C OXT sing N N 84 ASP CB CG sing N N 85 ASP CB HB2 sing N N 86 ASP CB HB3 sing N N 87 ASP CG OD1 doub N N 88 ASP CG OD2 sing N N 89 ASP OD2 HD2 sing N N 90 ASP OXT HXT sing N N 91 CYS N CA sing N N 92 CYS N H sing N N 93 CYS N H2 sing N N 94 CYS CA C sing N N 95 CYS CA CB sing N N 96 CYS CA HA sing N N 97 CYS C O doub N N 98 CYS C OXT sing N N 99 CYS CB SG sing N N 100 CYS CB HB2 sing N N 101 CYS CB HB3 sing N N 102 CYS SG HG sing N N 103 CYS OXT HXT sing N N 104 DA OP3 P sing N N 105 DA OP3 HOP3 sing N N 106 DA P OP1 doub N N 107 DA P OP2 sing N N 108 DA P "O5'" sing N N 109 DA OP2 HOP2 sing N N 110 DA "O5'" "C5'" sing N N 111 DA "C5'" "C4'" sing N N 112 DA "C5'" "H5'" sing N N 113 DA "C5'" "H5''" sing N N 114 DA "C4'" "O4'" sing N N 115 DA "C4'" "C3'" sing N N 116 DA "C4'" "H4'" sing N N 117 DA "O4'" "C1'" sing N N 118 DA "C3'" "O3'" sing N N 119 DA "C3'" "C2'" sing N N 120 DA "C3'" "H3'" sing N N 121 DA "O3'" "HO3'" sing N N 122 DA "C2'" "C1'" sing N N 123 DA "C2'" "H2'" sing N N 124 DA "C2'" "H2''" sing N N 125 DA "C1'" N9 sing N N 126 DA "C1'" "H1'" sing N N 127 DA N9 C8 sing Y N 128 DA N9 C4 sing Y N 129 DA C8 N7 doub Y N 130 DA C8 H8 sing N N 131 DA N7 C5 sing Y N 132 DA C5 C6 sing Y N 133 DA C5 C4 doub Y N 134 DA C6 N6 sing N N 135 DA C6 N1 doub Y N 136 DA N6 H61 sing N N 137 DA N6 H62 sing N N 138 DA N1 C2 sing Y N 139 DA C2 N3 doub Y N 140 DA C2 H2 sing N N 141 DA N3 C4 sing Y N 142 DC OP3 P sing N N 143 DC OP3 HOP3 sing N N 144 DC P OP1 doub N N 145 DC P OP2 sing N N 146 DC P "O5'" sing N N 147 DC OP2 HOP2 sing N N 148 DC "O5'" "C5'" sing N N 149 DC "C5'" "C4'" sing N N 150 DC "C5'" "H5'" sing N N 151 DC "C5'" "H5''" sing N N 152 DC "C4'" "O4'" sing N N 153 DC "C4'" "C3'" sing N N 154 DC "C4'" "H4'" sing N N 155 DC "O4'" "C1'" sing N N 156 DC "C3'" "O3'" sing N N 157 DC "C3'" "C2'" sing N N 158 DC "C3'" "H3'" sing N N 159 DC "O3'" "HO3'" sing N N 160 DC "C2'" "C1'" sing N N 161 DC "C2'" "H2'" sing N N 162 DC "C2'" "H2''" sing N N 163 DC "C1'" N1 sing N N 164 DC "C1'" "H1'" sing N N 165 DC N1 C2 sing N N 166 DC N1 C6 sing N N 167 DC C2 O2 doub N N 168 DC C2 N3 sing N N 169 DC N3 C4 doub N N 170 DC C4 N4 sing N N 171 DC C4 C5 sing N N 172 DC N4 H41 sing N N 173 DC N4 H42 sing N N 174 DC C5 C6 doub N N 175 DC C5 H5 sing N N 176 DC C6 H6 sing N N 177 DG OP3 P sing N N 178 DG OP3 HOP3 sing N N 179 DG P OP1 doub N N 180 DG P OP2 sing N N 181 DG P "O5'" sing N N 182 DG OP2 HOP2 sing N N 183 DG "O5'" "C5'" sing N N 184 DG "C5'" "C4'" sing N N 185 DG "C5'" "H5'" sing N N 186 DG "C5'" "H5''" sing N N 187 DG "C4'" "O4'" sing N N 188 DG "C4'" "C3'" sing N N 189 DG "C4'" "H4'" sing N N 190 DG "O4'" "C1'" sing N N 191 DG "C3'" "O3'" sing N N 192 DG "C3'" "C2'" sing N N 193 DG "C3'" "H3'" sing N N 194 DG "O3'" "HO3'" sing N N 195 DG "C2'" "C1'" sing N N 196 DG "C2'" "H2'" sing N N 197 DG "C2'" "H2''" sing N N 198 DG "C1'" N9 sing N N 199 DG "C1'" "H1'" sing N N 200 DG N9 C8 sing Y N 201 DG N9 C4 sing Y N 202 DG C8 N7 doub Y N 203 DG C8 H8 sing N N 204 DG N7 C5 sing Y N 205 DG C5 C6 sing N N 206 DG C5 C4 doub Y N 207 DG C6 O6 doub N N 208 DG C6 N1 sing N N 209 DG N1 C2 sing N N 210 DG N1 H1 sing N N 211 DG C2 N2 sing N N 212 DG C2 N3 doub N N 213 DG N2 H21 sing N N 214 DG N2 H22 sing N N 215 DG N3 C4 sing N N 216 DT OP3 P sing N N 217 DT OP3 HOP3 sing N N 218 DT P OP1 doub N N 219 DT P OP2 sing N N 220 DT P "O5'" sing N N 221 DT OP2 HOP2 sing N N 222 DT "O5'" "C5'" sing N N 223 DT "C5'" "C4'" sing N N 224 DT "C5'" "H5'" sing N N 225 DT "C5'" "H5''" sing N N 226 DT "C4'" "O4'" sing N N 227 DT "C4'" "C3'" sing N N 228 DT "C4'" "H4'" sing N N 229 DT "O4'" "C1'" sing N N 230 DT "C3'" "O3'" sing N N 231 DT "C3'" "C2'" sing N N 232 DT "C3'" "H3'" sing N N 233 DT "O3'" "HO3'" sing N N 234 DT "C2'" "C1'" sing N N 235 DT "C2'" "H2'" sing N N 236 DT "C2'" "H2''" sing N N 237 DT "C1'" N1 sing N N 238 DT "C1'" "H1'" sing N N 239 DT N1 C2 sing N N 240 DT N1 C6 sing N N 241 DT C2 O2 doub N N 242 DT C2 N3 sing N N 243 DT N3 C4 sing N N 244 DT N3 H3 sing N N 245 DT C4 O4 doub N N 246 DT C4 C5 sing N N 247 DT C5 C7 sing N N 248 DT C5 C6 doub N N 249 DT C7 H71 sing N N 250 DT C7 H72 sing N N 251 DT C7 H73 sing N N 252 DT C6 H6 sing N N 253 GLN N CA sing N N 254 GLN N H sing N N 255 GLN N H2 sing N N 256 GLN CA C sing N N 257 GLN CA CB sing N N 258 GLN CA HA sing N N 259 GLN C O doub N N 260 GLN C OXT sing N N 261 GLN CB CG sing N N 262 GLN CB HB2 sing N N 263 GLN CB HB3 sing N N 264 GLN CG CD sing N N 265 GLN CG HG2 sing N N 266 GLN CG HG3 sing N N 267 GLN CD OE1 doub N N 268 GLN CD NE2 sing N N 269 GLN NE2 HE21 sing N N 270 GLN NE2 HE22 sing N N 271 GLN OXT HXT sing N N 272 GLU N CA sing N N 273 GLU N H sing N N 274 GLU N H2 sing N N 275 GLU CA C sing N N 276 GLU CA CB sing N N 277 GLU CA HA sing N N 278 GLU C O doub N N 279 GLU C OXT sing N N 280 GLU CB CG sing N N 281 GLU CB HB2 sing N N 282 GLU CB HB3 sing N N 283 GLU CG CD sing N N 284 GLU CG HG2 sing N N 285 GLU CG HG3 sing N N 286 GLU CD OE1 doub N N 287 GLU CD OE2 sing N N 288 GLU OE2 HE2 sing N N 289 GLU OXT HXT sing N N 290 GLY N CA sing N N 291 GLY N H sing N N 292 GLY N H2 sing N N 293 GLY CA C sing N N 294 GLY CA HA2 sing N N 295 GLY CA HA3 sing N N 296 GLY C O doub N N 297 GLY C OXT sing N N 298 GLY OXT HXT sing N N 299 HIS N CA sing N N 300 HIS N H sing N N 301 HIS N H2 sing N N 302 HIS CA C sing N N 303 HIS CA CB sing N N 304 HIS CA HA sing N N 305 HIS C O doub N N 306 HIS C OXT sing N N 307 HIS CB CG sing N N 308 HIS CB HB2 sing N N 309 HIS CB HB3 sing N N 310 HIS CG ND1 sing Y N 311 HIS CG CD2 doub Y N 312 HIS ND1 CE1 doub Y N 313 HIS ND1 HD1 sing N N 314 HIS CD2 NE2 sing Y N 315 HIS CD2 HD2 sing N N 316 HIS CE1 NE2 sing Y N 317 HIS CE1 HE1 sing N N 318 HIS NE2 HE2 sing N N 319 HIS OXT HXT sing N N 320 HOH O H1 sing N N 321 HOH O H2 sing N N 322 LEU N CA sing N N 323 LEU N H sing N N 324 LEU N H2 sing N N 325 LEU CA C sing N N 326 LEU CA CB sing N N 327 LEU CA HA sing N N 328 LEU C O doub N N 329 LEU C OXT sing N N 330 LEU CB CG sing N N 331 LEU CB HB2 sing N N 332 LEU CB HB3 sing N N 333 LEU CG CD1 sing N N 334 LEU CG CD2 sing N N 335 LEU CG HG sing N N 336 LEU CD1 HD11 sing N N 337 LEU CD1 HD12 sing N N 338 LEU CD1 HD13 sing N N 339 LEU CD2 HD21 sing N N 340 LEU CD2 HD22 sing N N 341 LEU CD2 HD23 sing N N 342 LEU OXT HXT sing N N 343 LYS N CA sing N N 344 LYS N H sing N N 345 LYS N H2 sing N N 346 LYS CA C sing N N 347 LYS CA CB sing N N 348 LYS CA HA sing N N 349 LYS C O doub N N 350 LYS C OXT sing N N 351 LYS CB CG sing N N 352 LYS CB HB2 sing N N 353 LYS CB HB3 sing N N 354 LYS CG CD sing N N 355 LYS CG HG2 sing N N 356 LYS CG HG3 sing N N 357 LYS CD CE sing N N 358 LYS CD HD2 sing N N 359 LYS CD HD3 sing N N 360 LYS CE NZ sing N N 361 LYS CE HE2 sing N N 362 LYS CE HE3 sing N N 363 LYS NZ HZ1 sing N N 364 LYS NZ HZ2 sing N N 365 LYS NZ HZ3 sing N N 366 LYS OXT HXT sing N N 367 MET N CA sing N N 368 MET N H sing N N 369 MET N H2 sing N N 370 MET CA C sing N N 371 MET CA CB sing N N 372 MET CA HA sing N N 373 MET C O doub N N 374 MET C OXT sing N N 375 MET CB CG sing N N 376 MET CB HB2 sing N N 377 MET CB HB3 sing N N 378 MET CG SD sing N N 379 MET CG HG2 sing N N 380 MET CG HG3 sing N N 381 MET SD CE sing N N 382 MET CE HE1 sing N N 383 MET CE HE2 sing N N 384 MET CE HE3 sing N N 385 MET OXT HXT sing N N 386 PHE N CA sing N N 387 PHE N H sing N N 388 PHE N H2 sing N N 389 PHE CA C sing N N 390 PHE CA CB sing N N 391 PHE CA HA sing N N 392 PHE C O doub N N 393 PHE C OXT sing N N 394 PHE CB CG sing N N 395 PHE CB HB2 sing N N 396 PHE CB HB3 sing N N 397 PHE CG CD1 doub Y N 398 PHE CG CD2 sing Y N 399 PHE CD1 CE1 sing Y N 400 PHE CD1 HD1 sing N N 401 PHE CD2 CE2 doub Y N 402 PHE CD2 HD2 sing N N 403 PHE CE1 CZ doub Y N 404 PHE CE1 HE1 sing N N 405 PHE CE2 CZ sing Y N 406 PHE CE2 HE2 sing N N 407 PHE CZ HZ sing N N 408 PHE OXT HXT sing N N 409 PRO N CA sing N N 410 PRO N CD sing N N 411 PRO N H sing N N 412 PRO CA C sing N N 413 PRO CA CB sing N N 414 PRO CA HA sing N N 415 PRO C O doub N N 416 PRO C OXT sing N N 417 PRO CB CG sing N N 418 PRO CB HB2 sing N N 419 PRO CB HB3 sing N N 420 PRO CG CD sing N N 421 PRO CG HG2 sing N N 422 PRO CG HG3 sing N N 423 PRO CD HD2 sing N N 424 PRO CD HD3 sing N N 425 PRO OXT HXT sing N N 426 SER N CA sing N N 427 SER N H sing N N 428 SER N H2 sing N N 429 SER CA C sing N N 430 SER CA CB sing N N 431 SER CA HA sing N N 432 SER C O doub N N 433 SER C OXT sing N N 434 SER CB OG sing N N 435 SER CB HB2 sing N N 436 SER CB HB3 sing N N 437 SER OG HG sing N N 438 SER OXT HXT sing N N 439 THR N CA sing N N 440 THR N H sing N N 441 THR N H2 sing N N 442 THR CA C sing N N 443 THR CA CB sing N N 444 THR CA HA sing N N 445 THR C O doub N N 446 THR C OXT sing N N 447 THR CB OG1 sing N N 448 THR CB CG2 sing N N 449 THR CB HB sing N N 450 THR OG1 HG1 sing N N 451 THR CG2 HG21 sing N N 452 THR CG2 HG22 sing N N 453 THR CG2 HG23 sing N N 454 THR OXT HXT sing N N 455 TRP N CA sing N N 456 TRP N H sing N N 457 TRP N H2 sing N N 458 TRP CA C sing N N 459 TRP CA CB sing N N 460 TRP CA HA sing N N 461 TRP C O doub N N 462 TRP C OXT sing N N 463 TRP CB CG sing N N 464 TRP CB HB2 sing N N 465 TRP CB HB3 sing N N 466 TRP CG CD1 doub Y N 467 TRP CG CD2 sing Y N 468 TRP CD1 NE1 sing Y N 469 TRP CD1 HD1 sing N N 470 TRP CD2 CE2 doub Y N 471 TRP CD2 CE3 sing Y N 472 TRP NE1 CE2 sing Y N 473 TRP NE1 HE1 sing N N 474 TRP CE2 CZ2 sing Y N 475 TRP CE3 CZ3 doub Y N 476 TRP CE3 HE3 sing N N 477 TRP CZ2 CH2 doub Y N 478 TRP CZ2 HZ2 sing N N 479 TRP CZ3 CH2 sing Y N 480 TRP CZ3 HZ3 sing N N 481 TRP CH2 HH2 sing N N 482 TRP OXT HXT sing N N 483 TYR N CA sing N N 484 TYR N H sing N N 485 TYR N H2 sing N N 486 TYR CA C sing N N 487 TYR CA CB sing N N 488 TYR CA HA sing N N 489 TYR C O doub N N 490 TYR C OXT sing N N 491 TYR CB CG sing N N 492 TYR CB HB2 sing N N 493 TYR CB HB3 sing N N 494 TYR CG CD1 doub Y N 495 TYR CG CD2 sing Y N 496 TYR CD1 CE1 sing Y N 497 TYR CD1 HD1 sing N N 498 TYR CD2 CE2 doub Y N 499 TYR CD2 HD2 sing N N 500 TYR CE1 CZ doub Y N 501 TYR CE1 HE1 sing N N 502 TYR CE2 CZ sing Y N 503 TYR CE2 HE2 sing N N 504 TYR CZ OH sing N N 505 TYR OH HH sing N N 506 TYR OXT HXT sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6CC8 'double helix' 6CC8 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 12 1_555 -0.321 -0.125 -0.006 0.585 -4.736 1.070 1 C_DG1:DC12_D C 1 ? D 12 ? 19 1 1 C DC 2 1_555 D DG 11 1_555 0.045 -0.121 0.194 -3.086 -9.853 -0.574 2 C_DC2:DG11_D C 2 ? D 11 ? 19 1 1 C DC 3 1_555 D DG 10 1_555 0.495 -0.182 0.103 2.749 -11.248 -1.389 3 C_DC3:DG10_D C 3 ? D 10 ? 19 1 1 C DA 4 1_555 D DT 9 1_555 0.017 -0.003 0.157 -0.555 -11.987 1.959 4 C_DA4:DT9_D C 4 ? D 9 ? 20 1 1 C DA 5 1_555 D DT 8 1_555 0.087 -0.151 0.168 -5.038 -6.922 1.905 5 C_DA5:DT8_D C 5 ? D 8 ? 20 1 1 C 5CM 6 1_555 D DG 7 1_555 0.173 -0.197 0.060 1.468 -4.269 -5.370 6 C_5CM6:DG7_D C 6 ? D 7 ? 19 1 1 C DG 7 1_555 D 5CM 6 1_555 -0.277 -0.213 -0.170 -9.457 -6.584 -0.264 7 C_DG7:5CM6_D C 7 ? D 6 ? 19 1 1 C DT 8 1_555 D DA 5 1_555 -0.224 -0.118 0.191 -4.934 -10.945 -3.903 8 C_DT8:DA5_D C 8 ? D 5 ? 20 1 1 C DT 9 1_555 D DA 4 1_555 -0.033 -0.053 -0.086 -0.939 -15.911 -0.927 9 C_DT9:DA4_D C 9 ? D 4 ? 20 1 1 C DG 10 1_555 D DC 3 1_555 -0.306 -0.069 0.022 -2.278 -4.923 -0.310 10 C_DG10:DC3_D C 10 ? D 3 ? 19 1 1 C DG 11 1_555 D DC 2 1_555 -0.376 -0.200 0.089 1.791 -8.447 -1.378 11 C_DG11:DC2_D C 11 ? D 2 ? 19 1 1 C DC 12 1_555 D DG 1 1_555 0.240 -0.107 -0.003 -0.229 -4.042 -1.499 12 C_DC12:DG1_D C 12 ? D 1 ? 19 1 1 E DG 1 1_555 F DC 12 1_555 -0.293 -0.207 -0.147 1.506 -5.959 0.031 13 E_DG1:DC12_F E 1 ? F 12 ? 19 1 1 E DC 2 1_555 F DG 11 1_555 0.137 -0.078 0.127 -4.840 -8.849 -1.042 14 E_DC2:DG11_F E 2 ? F 11 ? 19 1 1 E DC 3 1_555 F DG 10 1_555 0.465 -0.144 0.007 2.187 -10.358 -0.841 15 E_DC3:DG10_F E 3 ? F 10 ? 19 1 1 E DA 4 1_555 F DT 9 1_555 -0.088 -0.109 0.109 -1.183 -10.102 -0.987 16 E_DA4:DT9_F E 4 ? F 9 ? 20 1 1 E DA 5 1_555 F DT 8 1_555 -0.102 -0.099 0.062 -8.304 -8.561 3.155 17 E_DA5:DT8_F E 5 ? F 8 ? 20 1 1 E 5CM 6 1_555 F DG 7 1_555 0.270 -0.215 0.104 1.817 -2.631 -3.428 18 E_5CM6:DG7_F E 6 ? F 7 ? 19 1 1 E DG 7 1_555 F 5CM 6 1_555 -0.314 -0.223 -0.127 -9.357 -6.218 0.451 19 E_DG7:5CM6_F E 7 ? F 6 ? 19 1 1 E DT 8 1_555 F DA 5 1_555 -0.144 -0.150 0.253 -6.240 -10.468 -2.821 20 E_DT8:DA5_F E 8 ? F 5 ? 20 1 1 E DT 9 1_555 F DA 4 1_555 0.165 -0.036 0.149 1.424 -11.280 -0.771 21 E_DT9:DA4_F E 9 ? F 4 ? 20 1 1 E DG 10 1_555 F DC 3 1_555 -0.461 -0.143 0.074 -0.222 -6.394 -1.968 22 E_DG10:DC3_F E 10 ? F 3 ? 19 1 1 E DG 11 1_555 F DC 2 1_555 -0.410 -0.259 -0.001 -0.043 -7.294 -3.173 23 E_DG11:DC2_F E 11 ? F 2 ? 19 1 1 E DC 12 1_555 F DG 1 1_555 0.053 -0.087 -0.081 0.812 -3.491 0.111 24 E_DC12:DG1_F E 12 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.964 -0.253 3.362 -3.211 -3.160 35.082 0.071 1.092 3.443 -5.215 5.300 35.361 1 CC_DG1DC2:DG11DC12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C DC 2 1_555 D DG 11 1_555 C DC 3 1_555 D DG 10 1_555 -0.175 0.531 3.204 2.537 2.747 31.538 0.474 0.779 3.214 5.032 -4.648 31.753 2 CC_DC2DC3:DG10DG11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DC 3 1_555 D DG 10 1_555 C DA 4 1_555 D DT 9 1_555 0.268 2.558 3.339 0.229 -7.475 48.890 3.596 -0.304 2.943 -8.971 -0.275 49.424 3 CC_DC3DA4:DT9DG10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DA 4 1_555 D DT 9 1_555 C DA 5 1_555 D DT 8 1_555 0.173 0.092 3.427 -3.683 5.793 31.599 -0.910 -0.994 3.350 10.484 6.666 32.317 4 CC_DA4DA5:DT8DT9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C DA 5 1_555 D DT 8 1_555 C 5CM 6 1_555 D DG 7 1_555 -0.196 -0.508 3.140 1.570 1.282 29.795 -1.241 0.691 3.101 2.489 -3.050 29.862 5 CC_DA55CM6:DG7DT8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C 5CM 6 1_555 D DG 7 1_555 C DG 7 1_555 D 5CM 6 1_555 0.609 -0.147 3.656 4.048 -0.232 42.815 -0.175 -0.379 3.697 -0.317 -5.530 42.997 6 CC_5CM6DG7:5CM6DG7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C DG 7 1_555 D 5CM 6 1_555 C DT 8 1_555 D DA 5 1_555 -1.196 -0.519 3.169 -4.087 -1.723 30.650 -0.641 1.454 3.320 -3.238 7.681 30.962 7 CC_DG7DT8:DA55CM6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C DT 8 1_555 D DA 5 1_555 C DT 9 1_555 D DA 4 1_555 -0.237 -0.168 3.199 1.611 2.610 29.544 -0.862 0.792 3.155 5.101 -3.148 29.699 8 CC_DT8DT9:DA4DA5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C DT 9 1_555 D DA 4 1_555 C DG 10 1_555 D DC 3 1_555 0.393 1.507 3.291 -0.430 -0.089 44.774 1.986 -0.556 3.284 -0.117 0.565 44.776 9 CC_DT9DG10:DC3DA4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C DG 10 1_555 D DC 3 1_555 C DG 11 1_555 D DC 2 1_555 -0.351 0.183 3.328 -2.505 2.744 29.746 -0.227 0.150 3.349 5.320 4.855 29.972 10 CC_DG10DG11:DC2DC3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C DG 11 1_555 D DC 2 1_555 C DC 12 1_555 D DG 1 1_555 0.619 -0.365 3.324 1.633 -2.222 36.792 -0.269 -0.752 3.363 -3.514 -2.583 36.892 11 CC_DG11DC12:DG1DC2_DD C 11 ? D 2 ? C 12 ? D 1 ? 1 E DG 1 1_555 F DC 12 1_555 E DC 2 1_555 F DG 11 1_555 -0.881 -0.264 3.408 -3.299 -1.398 35.815 -0.218 0.931 3.480 -2.266 5.347 35.988 12 EE_DG1DC2:DG11DC12_FF E 1 ? F 12 ? E 2 ? F 11 ? 1 E DC 2 1_555 F DG 11 1_555 E DC 3 1_555 F DG 10 1_555 -0.255 0.580 3.125 2.270 4.033 29.927 0.324 0.931 3.147 7.752 -4.362 30.275 13 EE_DC2DC3:DG10DG11_FF E 2 ? F 11 ? E 3 ? F 10 ? 1 E DC 3 1_555 F DG 10 1_555 E DA 4 1_555 F DT 9 1_555 0.127 2.493 3.311 -1.211 -7.409 48.252 3.558 -0.242 2.918 -8.999 1.471 48.798 14 EE_DC3DA4:DT9DG10_FF E 3 ? F 10 ? E 4 ? F 9 ? 1 E DA 4 1_555 F DT 9 1_555 E DA 5 1_555 F DT 8 1_555 0.254 0.145 3.511 -2.674 4.556 32.019 -0.600 -0.959 3.466 8.190 4.807 32.441 15 EE_DA4DA5:DT8DT9_FF E 4 ? F 9 ? E 5 ? F 8 ? 1 E DA 5 1_555 F DT 8 1_555 E 5CM 6 1_555 F DG 7 1_555 -0.272 -0.328 3.079 -0.146 2.510 31.086 -1.058 0.479 3.045 4.674 0.271 31.185 16 EE_DA55CM6:DG7DT8_FF E 5 ? F 8 ? E 6 ? F 7 ? 1 E 5CM 6 1_555 F DG 7 1_555 E DG 7 1_555 F 5CM 6 1_555 0.565 -0.139 3.661 3.997 -1.703 41.851 0.005 -0.320 3.700 -2.377 -5.578 42.065 17 EE_5CM6DG7:5CM6DG7_FF E 6 ? F 7 ? E 7 ? F 6 ? 1 E DG 7 1_555 F 5CM 6 1_555 E DT 8 1_555 F DA 5 1_555 -1.117 -0.510 3.234 -3.658 -0.496 30.731 -0.858 1.379 3.349 -0.931 6.871 30.947 18 EE_DG7DT8:DA55CM6_FF E 7 ? F 6 ? E 8 ? F 5 ? 1 E DT 8 1_555 F DA 5 1_555 E DT 9 1_555 F DA 4 1_555 -0.198 -0.153 3.184 -0.169 0.181 29.679 -0.336 0.353 3.184 0.354 0.329 29.680 19 EE_DT8DT9:DA4DA5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 E DT 9 1_555 F DA 4 1_555 E DG 10 1_555 F DC 3 1_555 0.251 1.441 3.271 1.525 -0.277 44.034 1.947 -0.191 3.269 -0.370 -2.033 44.060 20 EE_DT9DG10:DC3DA4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 E DG 10 1_555 F DC 3 1_555 E DG 11 1_555 F DC 2 1_555 -0.275 0.201 3.384 -1.071 1.579 31.139 0.062 0.300 3.397 2.939 1.993 31.196 21 EE_DG10DG11:DC2DC3_FF E 10 ? F 3 ? E 11 ? F 2 ? 1 E DG 11 1_555 F DC 2 1_555 E DC 12 1_555 F DG 1 1_555 0.855 -0.253 3.248 1.430 -0.453 35.623 -0.347 -1.190 3.282 -0.741 -2.335 35.653 22 EE_DG11DC12:DG1DC2_FF E 11 ? F 2 ? E 12 ? F 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6C2K _pdbx_initial_refinement_model.details 'PDB ENTRY 6C2K' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details 'similar to PDB entry 2KY8' #