HEADER IMMUNE SYSTEM 08-FEB-18 6CDO TITLE STRUCTURE OF VACCINE-ELICITED HIV-1 NEUTRALIZING ANTIBODY VFP16.02 IN TITLE 2 COMPLEX WITH HIV-1 FUSION PEPTIDE RESIDUE 512-519 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VFP16.02 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VFP16.02 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV-1 FUSION PEPTIDE 512-519; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 14 ORGANISM_TAXID: 11676 KEYWDS NEUTRALIZING, ANTIBODY, FUSION PEPTIDE, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,K.LIU,P.D.KWONG REVDAT 2 20-JUN-18 6CDO 1 JRNL REVDAT 1 16-MAY-18 6CDO 0 JRNL AUTH K.XU,P.ACHARYA,R.KONG,C.CHENG,G.Y.CHUANG,K.LIU,M.K.LOUDER, JRNL AUTH 2 S.O'DELL,R.RAWI,M.SASTRY,C.H.SHEN,B.ZHANG,T.ZHOU,M.ASOKAN, JRNL AUTH 3 R.T.BAILER,M.CHAMBERS,X.CHEN,C.W.CHOI,V.P.DANDEY, JRNL AUTH 4 N.A.DORIA-ROSE,A.DRUZ,E.T.ENG,S.K.FARNEY,K.E.FOULDS,H.GENG, JRNL AUTH 5 I.S.GEORGIEV,J.GORMAN,K.R.HILL,A.J.JAFARI,Y.D.KWON,Y.T.LAI, JRNL AUTH 6 T.LEMMIN,K.MCKEE,T.Y.OHR,L.OU,D.PENG,A.P.ROWSHAN,Z.SHENG, JRNL AUTH 7 J.P.TODD,Y.TSYBOVSKY,E.G.VIOX,Y.WANG,H.WEI,Y.YANG,A.F.ZHOU, JRNL AUTH 8 R.CHEN,L.YANG,D.G.SCORPIO,A.B.MCDERMOTT,L.SHAPIRO, JRNL AUTH 9 B.CARRAGHER,C.S.POTTER,J.R.MASCOLA,P.D.KWONG JRNL TITL EPITOPE-BASED VACCINE DESIGN YIELDS FUSION PEPTIDE-DIRECTED JRNL TITL 2 ANTIBODIES THAT NEUTRALIZE DIVERSE STRAINS OF HIV-1. JRNL REF NAT. MED. V. 24 857 2018 JRNL REFN ISSN 1546-170X JRNL PMID 29867235 JRNL DOI 10.1038/S41591-018-0042-6 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9622 - 5.2857 1.00 2972 153 0.1851 0.2112 REMARK 3 2 5.2857 - 4.1966 1.00 2822 139 0.1412 0.1616 REMARK 3 3 4.1966 - 3.6665 1.00 2771 150 0.1698 0.1900 REMARK 3 4 3.6665 - 3.3314 1.00 2740 164 0.1925 0.2302 REMARK 3 5 3.3314 - 3.0927 1.00 2727 165 0.2081 0.2432 REMARK 3 6 3.0927 - 2.9104 1.00 2767 138 0.2182 0.2429 REMARK 3 7 2.9104 - 2.7647 1.00 2732 125 0.2317 0.2643 REMARK 3 8 2.7647 - 2.6444 1.00 2731 146 0.2277 0.2951 REMARK 3 9 2.6444 - 2.5426 1.00 2717 151 0.2240 0.2239 REMARK 3 10 2.5426 - 2.4549 1.00 2724 136 0.2149 0.2736 REMARK 3 11 2.4549 - 2.3781 1.00 2706 140 0.2164 0.2519 REMARK 3 12 2.3781 - 2.3101 1.00 2705 143 0.2174 0.2881 REMARK 3 13 2.3101 - 2.2493 1.00 2708 152 0.2269 0.3081 REMARK 3 14 2.2493 - 2.1945 1.00 2715 125 0.2358 0.2520 REMARK 3 15 2.1945 - 2.1446 1.00 2677 142 0.2475 0.3212 REMARK 3 16 2.1446 - 2.0989 0.97 2618 130 0.2679 0.2990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3582 REMARK 3 ANGLE : 0.972 4873 REMARK 3 CHIRALITY : 0.056 546 REMARK 3 PLANARITY : 0.005 610 REMARK 3 DIHEDRAL : 7.555 2103 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAOAC PH 4.5, 2 M AMSO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.81900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.51350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.51350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.40950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.51350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.51350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.22850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.51350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.51350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.40950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.51350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.51350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.22850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.81900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 2 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 50 O HOH B 401 2.07 REMARK 500 O HOH B 457 O HOH B 484 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 183 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 18.73 58.44 REMARK 500 ASP A 149 62.26 62.28 REMARK 500 LYS B 55 84.35 58.16 REMARK 500 VAL B 56 -33.77 -11.50 REMARK 500 SER B 72 130.07 -170.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 55 VAL B 56 -137.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CDM RELATED DB: PDB REMARK 900 FOR THE SAME CITATION DBREF 6CDO A 1 230 PDB 6CDO 6CDO 1 230 DBREF 6CDO B 1 219 PDB 6CDO 6CDO 1 219 DBREF 6CDO C 512 519 PDB 6CDO 6CDO 512 519 SEQRES 1 A 230 GLN VAL GLN LEU LEU GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 A 230 PRO GLY ALA SER VAL THR LEU SER CYS LYS ALA SER GLY SEQRES 3 A 230 TYR ALA PHE SER ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 A 230 THR PRO VAL ARG GLY LEU ASP TRP ILE GLY ALA PHE ASP SEQRES 5 A 230 PRO LYS SER GLY ALA SER ALA SER ASN GLN LYS VAL LYS SEQRES 6 A 230 GLY ARG ALA ILE LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 A 230 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 A 230 ALA VAL TYR TYR CYS THR ARG LEU ARG TYR PHE GLY TYR SEQRES 9 A 230 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 A 230 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 A 230 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 A 230 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 230 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 A 230 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 A 230 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 A 230 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 A 230 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 A 230 ASP LYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 B 219 SER LEU GLY GLY GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 219 GLN SER VAL VAL TYR SER ASP GLY ASP THR TYR LEU GLU SEQRES 4 B 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 B 219 ILE TYR LYS VAL SER ARG ARG PHE SER GLY VAL PRO ASP SEQRES 6 B 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 219 LYS ILE SER ARG VAL GLU THR GLU ASP LEU GLY VAL TYR SEQRES 8 B 219 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 B 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 B 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 B 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 B 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 B 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 B 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 B 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 B 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 B 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 8 ALA VAL GLY ILE GLY ALA VAL PHE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 10(O4 S 2-) FORMUL 14 HOH *295(H2 O) HELIX 1 AA1 ALA A 28 TYR A 32 5 5 HELIX 2 AA2 THR A 87 SER A 91 5 5 HELIX 3 AA3 SER A 132 LYS A 134 5 3 HELIX 4 AA4 SER A 161 ALA A 163 5 3 HELIX 5 AA5 SER A 192 LEU A 194 5 3 HELIX 6 AA6 LYS A 206 ASN A 209 5 4 HELIX 7 AA7 ASP A 222 GLU A 226 5 5 HELIX 8 AA8 GLU B 84 LEU B 88 5 5 HELIX 9 AA9 SER B 126 SER B 132 1 7 HELIX 10 AB1 LYS B 188 LYS B 193 1 6 SHEET 1 AA1 4 GLN A 3 LEU A 5 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N LEU A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N LEU A 20 SHEET 4 AA1 4 ALA A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 ALA A 9 VAL A 12 0 SHEET 2 AA2 6 THR A 112 VAL A 116 1 O THR A 115 N VAL A 12 SHEET 3 AA2 6 ALA A 92 LEU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AA2 6 GLU A 33 THR A 40 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLY A 44 PHE A 51 -1 O ILE A 48 N TRP A 36 SHEET 6 AA2 6 SER A 58 SER A 60 -1 O ALA A 59 N ALA A 50 SHEET 1 AA3 4 SER A 125 LEU A 129 0 SHEET 2 AA3 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AA3 4 TYR A 181 PRO A 190 -1 O TYR A 181 N TYR A 150 SHEET 4 AA3 4 VAL A 168 THR A 170 -1 N HIS A 169 O VAL A 186 SHEET 1 AA4 4 THR A 136 SER A 137 0 SHEET 2 AA4 4 THR A 140 TYR A 150 -1 O THR A 140 N SER A 137 SHEET 3 AA4 4 TYR A 181 PRO A 190 -1 O TYR A 181 N TYR A 150 SHEET 4 AA4 4 VAL A 174 LEU A 175 -1 N VAL A 174 O SER A 182 SHEET 1 AA5 3 THR A 156 TRP A 159 0 SHEET 2 AA5 3 ILE A 200 HIS A 205 -1 O ASN A 202 N SER A 158 SHEET 3 AA5 3 THR A 210 LYS A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 AA6 4 MET B 4 THR B 7 0 SHEET 2 AA6 4 GLN B 18 SER B 25 -1 O SER B 22 N THR B 7 SHEET 3 AA6 4 ASP B 75 SER B 81 -1 O PHE B 76 N CYS B 23 SHEET 4 AA6 4 PHE B 67 SER B 72 -1 N SER B 68 O LYS B 79 SHEET 1 AA7 6 SER B 10 SER B 14 0 SHEET 2 AA7 6 THR B 107 LYS B 112 1 O LYS B 112 N VAL B 13 SHEET 3 AA7 6 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 SHEET 4 AA7 6 LEU B 38 GLN B 43 -1 N TYR B 41 O TYR B 92 SHEET 5 AA7 6 LYS B 50 TYR B 54 -1 O LYS B 50 N LEU B 42 SHEET 6 AA7 6 ARG B 58 ARG B 59 -1 O ARG B 58 N TYR B 54 SHEET 1 AA8 4 SER B 10 SER B 14 0 SHEET 2 AA8 4 THR B 107 LYS B 112 1 O LYS B 112 N VAL B 13 SHEET 3 AA8 4 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 SHEET 4 AA8 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AA9 4 SER B 119 PHE B 123 0 SHEET 2 AA9 4 THR B 134 PHE B 144 -1 O ASN B 142 N SER B 119 SHEET 3 AA9 4 TYR B 178 SER B 187 -1 O LEU B 180 N LEU B 141 SHEET 4 AA9 4 SER B 164 VAL B 168 -1 N GLN B 165 O THR B 183 SHEET 1 AB1 4 ALA B 158 LEU B 159 0 SHEET 2 AB1 4 LYS B 150 VAL B 155 -1 N VAL B 155 O ALA B 158 SHEET 3 AB1 4 VAL B 196 THR B 202 -1 O GLU B 200 N GLN B 152 SHEET 4 AB1 4 VAL B 210 ASN B 215 -1 O VAL B 210 N VAL B 201 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.08 SSBOND 2 CYS A 145 CYS A 201 1555 1555 2.06 SSBOND 3 CYS A 221 CYS B 219 1555 1555 2.05 SSBOND 4 CYS B 23 CYS B 93 1555 1555 2.07 SSBOND 5 CYS B 139 CYS B 199 1555 1555 2.04 LINK NH2 ARG B 58 O4 SO4 B 302 1555 7555 1.30 CISPEP 1 PHE A 151 PRO A 152 0 -2.76 CISPEP 2 GLU A 153 PRO A 154 0 -2.62 CISPEP 3 THR B 7 PRO B 8 0 -4.17 CISPEP 4 VAL B 99 PRO B 100 0 0.32 CISPEP 5 TYR B 145 PRO B 146 0 1.19 SITE 1 AC1 4 THR A 40 PRO A 41 VAL A 42 ARG A 43 SITE 1 AC2 3 GLY A 8 LYS A 206 HOH A 508 SITE 1 AC3 4 SER A 133 LYS A 134 LYS A 223 LYS B 212 SITE 1 AC4 3 PRO A 14 SER A 117 SER A 118 SITE 1 AC5 2 SER A 25 GLY A 26 SITE 1 AC6 5 ARG A 13 LYS A 74 SER A 120 HOH A 401 SITE 2 AC6 5 HOH A 518 SITE 1 AC7 3 PRO B 8 LEU B 9 SER B 10 SITE 1 AC8 3 ASP B 35 SER B 57 ARG B 58 SITE 1 AC9 3 SER B 57 ARG B 58 ARG B 59 SITE 1 AD1 5 TYR B 31 SER B 97 HIS B 98 LYS B 195 SITE 2 AD1 5 HOH B 414 CRYST1 141.027 141.027 77.638 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012880 0.00000