HEADER TOXIN 10-FEB-18 6CE2
TITLE CRYSTAL STRUCTURE OF MYOTOXIN I (MJTX-I) FROM BOTHROPS MOOJENI
TITLE 2 COMPLEXED TO INHIBITOR SURAMIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: SVPLA2 HOMOLOG,MJTX-I,MYOTOXIN I
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI;
SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER;
SOURCE 4 ORGANISM_TAXID: 98334;
SOURCE 5 TISSUE: VENOM GLAND
KEYWDS MYOTOXIN I, MJTX-I, PLA2-LIKE, SURAMIN, TOXIN
EXPDTA X-RAY DIFFRACTION
AUTHOR G.H.M.SALVADOR,M.R.M.FONTES
REVDAT 5 23-OCT-24 6CE2 1 REMARK
REVDAT 4 04-OCT-23 6CE2 1 COMPND HETNAM
REVDAT 3 01-JAN-20 6CE2 1 REMARK
REVDAT 2 17-APR-19 6CE2 1 REMARK
REVDAT 1 25-JUL-18 6CE2 0
JRNL AUTH G.H.M.SALVADOR,T.R.DREYER,A.A.S.GOMES,W.L.G.CAVALCANTE,
JRNL AUTH 2 J.I.DOS SANTOS,C.A.GANDIN,M.DE OLIVEIRA NETO,M.GALLACCI,
JRNL AUTH 3 M.R.M.FONTES
JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SURAMIN-BOUND
JRNL TITL 2 MJTX-I FROM BOTHROPS MOOJENI SUGGESTS A PARTICULAR MYOTOXIC
JRNL TITL 3 MECHANISM.
JRNL REF SCI REP V. 8 10317 2018
JRNL REFN ESSN 2045-2322
JRNL PMID 29985425
JRNL DOI 10.1038/S41598-018-28584-7
REMARK 2
REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.12_2829
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.57
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 3 NUMBER OF REFLECTIONS : 16817
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.222
REMARK 3 R VALUE (WORKING SET) : 0.221
REMARK 3 FREE R VALUE : 0.249
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050
REMARK 3 FREE R VALUE TEST SET COUNT : 850
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 25.5706 - 3.8922 0.98 2836 128 0.2018 0.1935
REMARK 3 2 3.8922 - 3.0910 0.99 2710 123 0.2087 0.2480
REMARK 3 3 3.0910 - 2.7008 0.98 2633 156 0.2339 0.2566
REMARK 3 4 2.7008 - 2.4541 0.99 2639 154 0.2496 0.2743
REMARK 3 5 2.4541 - 2.2783 0.98 2597 148 0.2420 0.3215
REMARK 3 6 2.2783 - 2.1440 0.97 2552 141 0.2564 0.3256
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 28.39
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.51
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 2051
REMARK 3 ANGLE : 0.891 2770
REMARK 3 CHIRALITY : 0.043 269
REMARK 3 PLANARITY : 0.004 345
REMARK 3 DIHEDRAL : 15.385 1229
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.2008 2.7713 23.9922
REMARK 3 T TENSOR
REMARK 3 T11: 0.1802 T22: 0.2568
REMARK 3 T33: 0.2591 T12: 0.0112
REMARK 3 T13: -0.0128 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 1.4964 L22: 3.1980
REMARK 3 L33: 1.5570 L12: 0.4183
REMARK 3 L13: -0.0167 L23: -0.1055
REMARK 3 S TENSOR
REMARK 3 S11: 0.0410 S12: 0.0573 S13: 0.0733
REMARK 3 S21: -0.0049 S22: -0.0733 S23: -0.0874
REMARK 3 S31: -0.0394 S32: 0.1012 S33: -0.0086
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.0191 -7.8495 12.8231
REMARK 3 T TENSOR
REMARK 3 T11: 0.4549 T22: 0.3741
REMARK 3 T33: 0.3720 T12: 0.0107
REMARK 3 T13: 0.0382 T23: -0.0290
REMARK 3 L TENSOR
REMARK 3 L11: 8.3067 L22: 2.2538
REMARK 3 L33: 9.4761 L12: -0.2416
REMARK 3 L13: 1.1927 L23: -3.5483
REMARK 3 S TENSOR
REMARK 3 S11: -0.4740 S12: 1.0511 S13: -0.0596
REMARK 3 S21: -1.0892 S22: -0.1277 S23: -0.0660
REMARK 3 S31: 0.0198 S32: -0.0641 S33: 0.6599
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 90 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.0600 -14.8743 26.3265
REMARK 3 T TENSOR
REMARK 3 T11: 0.2586 T22: 0.2379
REMARK 3 T33: 0.3408 T12: 0.0403
REMARK 3 T13: 0.0244 T23: 0.0067
REMARK 3 L TENSOR
REMARK 3 L11: 7.6176 L22: 3.8787
REMARK 3 L33: 6.5546 L12: 0.9972
REMARK 3 L13: -3.3936 L23: -1.0580
REMARK 3 S TENSOR
REMARK 3 S11: -0.1234 S12: 0.3843 S13: -0.4402
REMARK 3 S21: -0.2034 S22: -0.0786 S23: -0.4423
REMARK 3 S31: 0.7462 S32: 0.4197 S33: 0.3331
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 117 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.6190 0.0110 28.2879
REMARK 3 T TENSOR
REMARK 3 T11: 0.1675 T22: 0.2933
REMARK 3 T33: 0.2545 T12: -0.0404
REMARK 3 T13: -0.0161 T23: 0.0550
REMARK 3 L TENSOR
REMARK 3 L11: 1.9252 L22: 8.9924
REMARK 3 L33: 4.8596 L12: -3.0759
REMARK 3 L13: -1.7999 L23: 5.1416
REMARK 3 S TENSOR
REMARK 3 S11: 0.0018 S12: -0.1110 S13: -0.1224
REMARK 3 S21: 0.2418 S22: 0.0879 S23: -0.2338
REMARK 3 S31: 0.1656 S32: 0.1605 S33: -0.1397
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.3595 14.9380 20.4644
REMARK 3 T TENSOR
REMARK 3 T11: 0.2732 T22: 0.4592
REMARK 3 T33: 0.4615 T12: -0.0012
REMARK 3 T13: -0.0703 T23: -0.0424
REMARK 3 L TENSOR
REMARK 3 L11: 3.4775 L22: 3.7176
REMARK 3 L33: 1.1164 L12: -2.9790
REMARK 3 L13: 1.1278 L23: -0.0436
REMARK 3 S TENSOR
REMARK 3 S11: 0.5423 S12: -0.0818 S13: -0.2347
REMARK 3 S21: 0.1860 S22: -0.5524 S23: -0.4641
REMARK 3 S31: -0.3328 S32: 0.0218 S33: 0.0358
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 57 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.0080 3.5133 9.2048
REMARK 3 T TENSOR
REMARK 3 T11: 0.2078 T22: 0.2776
REMARK 3 T33: 0.2817 T12: 0.0353
REMARK 3 T13: -0.0079 T23: 0.0581
REMARK 3 L TENSOR
REMARK 3 L11: 1.4402 L22: 3.8171
REMARK 3 L33: 4.0197 L12: 0.6338
REMARK 3 L13: 0.2853 L23: 1.2275
REMARK 3 S TENSOR
REMARK 3 S11: 0.0192 S12: -0.0576 S13: -0.2732
REMARK 3 S21: 0.0523 S22: -0.0030 S23: 0.0473
REMARK 3 S31: 0.3454 S32: 0.1116 S33: -0.0134
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 88 )
REMARK 3 ORIGIN FOR THE GROUP (A): 1.7137 17.7943 5.2867
REMARK 3 T TENSOR
REMARK 3 T11: 0.2609 T22: 0.2519
REMARK 3 T33: 0.2744 T12: -0.0223
REMARK 3 T13: 0.0072 T23: 0.0360
REMARK 3 L TENSOR
REMARK 3 L11: 7.6032 L22: 2.6147
REMARK 3 L33: 3.4178 L12: -1.6812
REMARK 3 L13: -3.0834 L23: 2.3095
REMARK 3 S TENSOR
REMARK 3 S11: 0.3531 S12: 0.0684 S13: 0.2547
REMARK 3 S21: -0.4678 S22: -0.1085 S23: -0.1890
REMARK 3 S31: -0.3164 S32: 0.0201 S33: -0.1619
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 112 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.8779 10.9163 5.1191
REMARK 3 T TENSOR
REMARK 3 T11: 0.2207 T22: 0.2851
REMARK 3 T33: 0.3258 T12: 0.0344
REMARK 3 T13: -0.0103 T23: -0.0555
REMARK 3 L TENSOR
REMARK 3 L11: 6.6972 L22: 4.2706
REMARK 3 L33: 5.2962 L12: 5.3149
REMARK 3 L13: -3.8788 L23: -3.4627
REMARK 3 S TENSOR
REMARK 3 S11: -0.1408 S12: -0.0772 S13: -0.2322
REMARK 3 S21: -0.1606 S22: 0.0333 S23: 0.0306
REMARK 3 S31: 0.0286 S32: -0.0746 S33: 0.0189
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 133 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.3999 -7.8706 9.8827
REMARK 3 T TENSOR
REMARK 3 T11: 0.3470 T22: 0.3987
REMARK 3 T33: 0.4619 T12: -0.0326
REMARK 3 T13: 0.0481 T23: 0.0791
REMARK 3 L TENSOR
REMARK 3 L11: 4.2324 L22: 5.3367
REMARK 3 L33: 0.7823 L12: -1.3515
REMARK 3 L13: 1.1568 L23: -1.8782
REMARK 3 S TENSOR
REMARK 3 S11: -0.1714 S12: 0.3238 S13: -0.5890
REMARK 3 S21: -0.0274 S22: -0.0598 S23: -0.3961
REMARK 3 S31: 0.3867 S32: 0.1020 S33: 0.2614
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6CE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-18.
REMARK 100 THE DEPOSITION ID IS D_1000232606.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-MAR-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : LNLS
REMARK 200 BEAMLINE : W01B-MX2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.325
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16854
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3
REMARK 200 DATA REDUNDANCY : 4.600
REMARK 200 R MERGE (I) : 0.15000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6
REMARK 200 DATA REDUNDANCY IN SHELL : 4.80
REMARK 200 R MERGE FOR SHELL (I) : 0.40200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3T0R
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (W/V) PEG 4000; 0.1 M TRIS HCL;
REMARK 280 0.15 M MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37400
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.13750
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.14150
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.13750
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37400
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.14150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 19 CG1 CG2
REMARK 470 LYS A 20 CG CD CE NZ
REMARK 470 LYS A 70 CG CD CE NZ
REMARK 470 LYS A 129 CG CD CE NZ
REMARK 470 LYS B 20 CG CD CE NZ
REMARK 470 LYS B 57 CG CD CE NZ
REMARK 470 LYS B 78 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLY A 85 OE1 GLU A 87 2.05
REMARK 500 O HOH A 311 O HOH A 324 2.07
REMARK 500 N ASN A 79 O HOH A 301 2.13
REMARK 500 O35 SVR B 202 O HOH B 301 2.14
REMARK 500 NH1 ARG A 131 O HOH A 302 2.14
REMARK 500 O HOH A 311 O HOH B 356 2.16
REMARK 500 O HOH A 311 O HOH A 342 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 24 32.68 -152.04
REMARK 500 GLU A 87 -127.20 -118.13
REMARK 500 LYS A 115 0.20 -68.20
REMARK 500 ASP A 118 65.07 -104.12
REMARK 500 ALA B 24 53.28 -157.81
REMARK 500 VAL B 31 -159.17 -98.86
REMARK 500 GLU B 87 -101.26 -116.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 PRO A 123 PHE A 125 -122.89
REMARK 500 VAL B 119 TYR B 120 -148.37
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PE4 A 201
REMARK 610 PE4 B 201
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SVR B 202
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3T0R RELATED DB: PDB
REMARK 900 NATIVE CRYSTAL STRUCTURE
DBREF 6CE2 A 1 133 UNP P82114 PA2H1_BOTMO 1 121
DBREF 6CE2 B 1 133 UNP P82114 PA2H1_BOTMO 1 121
SEQADV 6CE2 VAL A 19 UNP P82114 ALA 18 CONFLICT
SEQADV 6CE2 ASN A 67 UNP P82114 ASP 58 CONFLICT
SEQADV 6CE2 VAL B 19 UNP P82114 ALA 18 CONFLICT
SEQADV 6CE2 ASN B 67 UNP P82114 ASP 58 CONFLICT
SEQRES 1 A 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR
SEQRES 2 A 121 GLY LYS ASN PRO VAL LYS SER TYR GLY ALA TYR GLY CYS
SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA
SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS
SEQRES 5 A 121 LYS LEU THR ASN CYS ASN PRO LYS LYS ASP ARG TYR SER
SEQRES 6 A 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU
SEQRES 7 A 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA
SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN
SEQRES 9 A 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS
SEQRES 10 A 121 GLY ARG ASP CYS
SEQRES 1 B 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR
SEQRES 2 B 121 GLY LYS ASN PRO VAL LYS SER TYR GLY ALA TYR GLY CYS
SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA
SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS
SEQRES 5 B 121 LYS LEU THR ASN CYS ASN PRO LYS LYS ASP ARG TYR SER
SEQRES 6 B 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU
SEQRES 7 B 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA
SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN
SEQRES 9 B 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS
SEQRES 10 B 121 GLY ARG ASP CYS
HET PE4 A 201 16
HET PE4 B 201 16
HET SVR B 202 86
HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
HETNAM SVR 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-
HETNAM 2 SVR METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-
HETNAM 3 SVR NAPHTHALENETRISULFON IC ACID
HETSYN PE4 POLYETHYLENE GLYCOL PEG4000
HETSYN SVR SURAMIN
FORMUL 3 PE4 2(C16 H34 O8)
FORMUL 5 SVR C51 H40 N6 O23 S6
FORMUL 6 HOH *181(H2 O)
HELIX 1 AA1 SER A 1 GLY A 15 1 14
HELIX 2 AA2 ASN A 17 GLY A 23 1 7
HELIX 3 AA3 ASP A 39 LYS A 57 1 16
HELIX 4 AA4 ASN A 88 ASN A 109 1 21
HELIX 5 AA5 LYS A 110 TYR A 113 5 4
HELIX 6 AA6 ASN A 114 ASP A 118 5 5
HELIX 7 AA7 LEU B 2 GLY B 15 1 13
HELIX 8 AA8 ASN B 17 GLY B 23 1 7
HELIX 9 AA9 ASP B 39 LEU B 58 1 17
HELIX 10 AB1 ASN B 88 ASN B 109 1 21
HELIX 11 AB2 LYS B 110 TYR B 113 5 4
SHEET 1 AA1 2 TYR A 75 LYS A 78 0
SHEET 2 AA1 2 THR A 81 CYS A 84 -1 O VAL A 83 N ASP A 76
SHEET 1 AA2 2 ALA B 24 TYR B 25 0
SHEET 2 AA2 2 CYS B 29 GLY B 30 -1 O CYS B 29 N TYR B 25
SHEET 1 AA3 2 TYR B 75 LYS B 78 0
SHEET 2 AA3 2 THR B 81 CYS B 84 -1 O VAL B 83 N ASP B 76
SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.02
SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03
SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.04
SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.03
SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.04
SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.04
SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.04
SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.03
SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03
SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.04
SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.04
SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.04
SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.04
SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.04
SITE 1 AC1 9 LEU A 2 GLY A 6 PRO A 18 TYR A 22
SITE 2 AC1 9 CYS A 29 GLY A 30 HOH A 330 TYR B 120
SITE 3 AC1 9 SVR B 202
SITE 1 AC2 4 PHE A 125 LYS B 7 GLN B 11 TYR B 75
SITE 1 AC3 27 LEU A 2 GLY A 30 LEU A 32 GLY A 33
SITE 2 AC3 27 ARG A 34 LYS A 49 TYR A 52 PE4 A 201
SITE 3 AC3 27 LEU B 2 PRO B 18 TYR B 22 GLY B 23
SITE 4 AC3 27 GLY B 30 LEU B 32 GLY B 33 ARG B 34
SITE 5 AC3 27 LYS B 49 TYR B 52 ASN B 67 PRO B 68
SITE 6 AC3 27 LYS B 69 LYS B 70 HOH B 301 HOH B 305
SITE 7 AC3 27 HOH B 309 HOH B 321 HOH B 337
CRYST1 48.748 60.283 102.275 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020514 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016588 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009778 0.00000