HEADER TOXIN 10-FEB-18 6CE2 TITLE CRYSTAL STRUCTURE OF MYOTOXIN I (MJTX-I) FROM BOTHROPS MOOJENI TITLE 2 COMPLEXED TO INHIBITOR SURAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,MJTX-I,MYOTOXIN I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334; SOURCE 5 TISSUE: VENOM GLAND KEYWDS MYOTOXIN I, MJTX-I, PLA2-LIKE, SURAMIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,M.R.M.FONTES REVDAT 4 04-OCT-23 6CE2 1 COMPND HETNAM REVDAT 3 01-JAN-20 6CE2 1 REMARK REVDAT 2 17-APR-19 6CE2 1 REMARK REVDAT 1 25-JUL-18 6CE2 0 JRNL AUTH G.H.M.SALVADOR,T.R.DREYER,A.A.S.GOMES,W.L.G.CAVALCANTE, JRNL AUTH 2 J.I.DOS SANTOS,C.A.GANDIN,M.DE OLIVEIRA NETO,M.GALLACCI, JRNL AUTH 3 M.R.M.FONTES JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SURAMIN-BOUND JRNL TITL 2 MJTX-I FROM BOTHROPS MOOJENI SUGGESTS A PARTICULAR MYOTOXIC JRNL TITL 3 MECHANISM. JRNL REF SCI REP V. 8 10317 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29985425 JRNL DOI 10.1038/S41598-018-28584-7 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5706 - 3.8922 0.98 2836 128 0.2018 0.1935 REMARK 3 2 3.8922 - 3.0910 0.99 2710 123 0.2087 0.2480 REMARK 3 3 3.0910 - 2.7008 0.98 2633 156 0.2339 0.2566 REMARK 3 4 2.7008 - 2.4541 0.99 2639 154 0.2496 0.2743 REMARK 3 5 2.4541 - 2.2783 0.98 2597 148 0.2420 0.3215 REMARK 3 6 2.2783 - 2.1440 0.97 2552 141 0.2564 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2051 REMARK 3 ANGLE : 0.891 2770 REMARK 3 CHIRALITY : 0.043 269 REMARK 3 PLANARITY : 0.004 345 REMARK 3 DIHEDRAL : 15.385 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2008 2.7713 23.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.2568 REMARK 3 T33: 0.2591 T12: 0.0112 REMARK 3 T13: -0.0128 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.4964 L22: 3.1980 REMARK 3 L33: 1.5570 L12: 0.4183 REMARK 3 L13: -0.0167 L23: -0.1055 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.0573 S13: 0.0733 REMARK 3 S21: -0.0049 S22: -0.0733 S23: -0.0874 REMARK 3 S31: -0.0394 S32: 0.1012 S33: -0.0086 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0191 -7.8495 12.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.4549 T22: 0.3741 REMARK 3 T33: 0.3720 T12: 0.0107 REMARK 3 T13: 0.0382 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 8.3067 L22: 2.2538 REMARK 3 L33: 9.4761 L12: -0.2416 REMARK 3 L13: 1.1927 L23: -3.5483 REMARK 3 S TENSOR REMARK 3 S11: -0.4740 S12: 1.0511 S13: -0.0596 REMARK 3 S21: -1.0892 S22: -0.1277 S23: -0.0660 REMARK 3 S31: 0.0198 S32: -0.0641 S33: 0.6599 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0600 -14.8743 26.3265 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.2379 REMARK 3 T33: 0.3408 T12: 0.0403 REMARK 3 T13: 0.0244 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 7.6176 L22: 3.8787 REMARK 3 L33: 6.5546 L12: 0.9972 REMARK 3 L13: -3.3936 L23: -1.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: 0.3843 S13: -0.4402 REMARK 3 S21: -0.2034 S22: -0.0786 S23: -0.4423 REMARK 3 S31: 0.7462 S32: 0.4197 S33: 0.3331 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6190 0.0110 28.2879 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.2933 REMARK 3 T33: 0.2545 T12: -0.0404 REMARK 3 T13: -0.0161 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.9252 L22: 8.9924 REMARK 3 L33: 4.8596 L12: -3.0759 REMARK 3 L13: -1.7999 L23: 5.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.1110 S13: -0.1224 REMARK 3 S21: 0.2418 S22: 0.0879 S23: -0.2338 REMARK 3 S31: 0.1656 S32: 0.1605 S33: -0.1397 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3595 14.9380 20.4644 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.4592 REMARK 3 T33: 0.4615 T12: -0.0012 REMARK 3 T13: -0.0703 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.4775 L22: 3.7176 REMARK 3 L33: 1.1164 L12: -2.9790 REMARK 3 L13: 1.1278 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.5423 S12: -0.0818 S13: -0.2347 REMARK 3 S21: 0.1860 S22: -0.5524 S23: -0.4641 REMARK 3 S31: -0.3328 S32: 0.0218 S33: 0.0358 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0080 3.5133 9.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2776 REMARK 3 T33: 0.2817 T12: 0.0353 REMARK 3 T13: -0.0079 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.4402 L22: 3.8171 REMARK 3 L33: 4.0197 L12: 0.6338 REMARK 3 L13: 0.2853 L23: 1.2275 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0576 S13: -0.2732 REMARK 3 S21: 0.0523 S22: -0.0030 S23: 0.0473 REMARK 3 S31: 0.3454 S32: 0.1116 S33: -0.0134 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7137 17.7943 5.2867 REMARK 3 T TENSOR REMARK 3 T11: 0.2609 T22: 0.2519 REMARK 3 T33: 0.2744 T12: -0.0223 REMARK 3 T13: 0.0072 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 7.6032 L22: 2.6147 REMARK 3 L33: 3.4178 L12: -1.6812 REMARK 3 L13: -3.0834 L23: 2.3095 REMARK 3 S TENSOR REMARK 3 S11: 0.3531 S12: 0.0684 S13: 0.2547 REMARK 3 S21: -0.4678 S22: -0.1085 S23: -0.1890 REMARK 3 S31: -0.3164 S32: 0.0201 S33: -0.1619 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8779 10.9163 5.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.2851 REMARK 3 T33: 0.3258 T12: 0.0344 REMARK 3 T13: -0.0103 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 6.6972 L22: 4.2706 REMARK 3 L33: 5.2962 L12: 5.3149 REMARK 3 L13: -3.8788 L23: -3.4627 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: -0.0772 S13: -0.2322 REMARK 3 S21: -0.1606 S22: 0.0333 S23: 0.0306 REMARK 3 S31: 0.0286 S32: -0.0746 S33: 0.0189 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3999 -7.8706 9.8827 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.3987 REMARK 3 T33: 0.4619 T12: -0.0326 REMARK 3 T13: 0.0481 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 4.2324 L22: 5.3367 REMARK 3 L33: 0.7823 L12: -1.3515 REMARK 3 L13: 1.1568 L23: -1.8782 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: 0.3238 S13: -0.5890 REMARK 3 S21: -0.0274 S22: -0.0598 S23: -0.3961 REMARK 3 S31: 0.3867 S32: 0.1020 S33: 0.2614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.325 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T0R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (W/V) PEG 4000; 0.1 M TRIS HCL; REMARK 280 0.15 M MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.13750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.13750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 19 CG1 CG2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 85 OE1 GLU A 87 2.05 REMARK 500 O HOH A 311 O HOH A 324 2.07 REMARK 500 N ASN A 79 O HOH A 301 2.13 REMARK 500 O35 SVR B 202 O HOH B 301 2.14 REMARK 500 NH1 ARG A 131 O HOH A 302 2.14 REMARK 500 O HOH A 311 O HOH B 356 2.16 REMARK 500 O HOH A 311 O HOH A 342 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 32.68 -152.04 REMARK 500 GLU A 87 -127.20 -118.13 REMARK 500 LYS A 115 0.20 -68.20 REMARK 500 ASP A 118 65.07 -104.12 REMARK 500 ALA B 24 53.28 -157.81 REMARK 500 VAL B 31 -159.17 -98.86 REMARK 500 GLU B 87 -101.26 -116.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 123 PHE A 125 -122.89 REMARK 500 VAL B 119 TYR B 120 -148.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 201 REMARK 610 PE4 B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SVR B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T0R RELATED DB: PDB REMARK 900 NATIVE CRYSTAL STRUCTURE DBREF 6CE2 A 1 133 UNP P82114 PA2H1_BOTMO 1 121 DBREF 6CE2 B 1 133 UNP P82114 PA2H1_BOTMO 1 121 SEQADV 6CE2 VAL A 19 UNP P82114 ALA 18 CONFLICT SEQADV 6CE2 ASN A 67 UNP P82114 ASP 58 CONFLICT SEQADV 6CE2 VAL B 19 UNP P82114 ALA 18 CONFLICT SEQADV 6CE2 ASN B 67 UNP P82114 ASP 58 CONFLICT SEQRES 1 A 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO VAL LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR ASN CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 A 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 A 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 A 121 GLY ARG ASP CYS SEQRES 1 B 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO VAL LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR ASN CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 B 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 B 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 B 121 GLY ARG ASP CYS HET PE4 A 201 16 HET PE4 B 201 16 HET SVR B 202 86 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM SVR 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4- HETNAM 2 SVR METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5- HETNAM 3 SVR NAPHTHALENETRISULFON IC ACID HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN SVR SURAMIN FORMUL 3 PE4 2(C16 H34 O8) FORMUL 5 SVR C51 H40 N6 O23 S6 FORMUL 6 HOH *181(H2 O) HELIX 1 AA1 SER A 1 GLY A 15 1 14 HELIX 2 AA2 ASN A 17 GLY A 23 1 7 HELIX 3 AA3 ASP A 39 LYS A 57 1 16 HELIX 4 AA4 ASN A 88 ASN A 109 1 21 HELIX 5 AA5 LYS A 110 TYR A 113 5 4 HELIX 6 AA6 ASN A 114 ASP A 118 5 5 HELIX 7 AA7 LEU B 2 GLY B 15 1 13 HELIX 8 AA8 ASN B 17 GLY B 23 1 7 HELIX 9 AA9 ASP B 39 LEU B 58 1 17 HELIX 10 AB1 ASN B 88 ASN B 109 1 21 HELIX 11 AB2 LYS B 110 TYR B 113 5 4 SHEET 1 AA1 2 TYR A 75 LYS A 78 0 SHEET 2 AA1 2 THR A 81 CYS A 84 -1 O VAL A 83 N ASP A 76 SHEET 1 AA2 2 ALA B 24 TYR B 25 0 SHEET 2 AA2 2 CYS B 29 GLY B 30 -1 O CYS B 29 N TYR B 25 SHEET 1 AA3 2 TYR B 75 LYS B 78 0 SHEET 2 AA3 2 THR B 81 CYS B 84 -1 O VAL B 83 N ASP B 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.02 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.03 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.04 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.04 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.04 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.03 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.04 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.04 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.04 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.04 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.04 SITE 1 AC1 9 LEU A 2 GLY A 6 PRO A 18 TYR A 22 SITE 2 AC1 9 CYS A 29 GLY A 30 HOH A 330 TYR B 120 SITE 3 AC1 9 SVR B 202 SITE 1 AC2 4 PHE A 125 LYS B 7 GLN B 11 TYR B 75 SITE 1 AC3 27 LEU A 2 GLY A 30 LEU A 32 GLY A 33 SITE 2 AC3 27 ARG A 34 LYS A 49 TYR A 52 PE4 A 201 SITE 3 AC3 27 LEU B 2 PRO B 18 TYR B 22 GLY B 23 SITE 4 AC3 27 GLY B 30 LEU B 32 GLY B 33 ARG B 34 SITE 5 AC3 27 LYS B 49 TYR B 52 ASN B 67 PRO B 68 SITE 6 AC3 27 LYS B 69 LYS B 70 HOH B 301 HOH B 305 SITE 7 AC3 27 HOH B 309 HOH B 321 HOH B 337 CRYST1 48.748 60.283 102.275 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009778 0.00000