HEADER HYDROLASE 11-FEB-18 6CEF TITLE CRYSTAL STRUCTURE OF FRAGMENT 3-(1,3-BENZOTHIAZOL-2-YL)PROPANOIC ACID TITLE 2 BOUND IN THE UBIQUITIN BINDING POCKET OF THE HDAC6 ZINC-FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HD6; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC6, KIAA0901, JM21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS HISTONE DEACETYLASE, HDAC, HDAC6, UBIQUITIN, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.HARDING,L.HALABELIAN,R.FERREIRA DE FREITAS,M.RAVICHANDRAN, AUTHOR 2 V.SANTHAKUMAR,M.SCHAPIRA,C.BOUNTRA,A.M.EDWARDS,C.M.ARROWSMITH, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 04-OCT-23 6CEF 1 REMARK REVDAT 3 30-MAY-18 6CEF 1 JRNL REVDAT 2 16-MAY-18 6CEF 1 JRNL REVDAT 1 28-FEB-18 6CEF 0 JRNL AUTH R.FERREIRA DE FREITAS,R.J.HARDING,I.FRANZONI,M.RAVICHANDRAN, JRNL AUTH 2 M.K.MANN,H.OUYANG,M.LAUTENS,V.SANTHAKUMAR,C.H.ARROWSMITH, JRNL AUTH 3 M.SCHAPIRA JRNL TITL IDENTIFICATION AND STRUCTURE-ACTIVITY RELATIONSHIP OF HDAC6 JRNL TITL 2 ZINC-FINGER UBIQUITIN BINDING DOMAIN INHIBITORS. JRNL REF J. MED. CHEM. V. 61 4517 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29741882 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00258 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 8903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.1490 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : 2.16000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 850 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 698 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1169 ; 1.840 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1620 ; 1.238 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 103 ; 6.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;36.094 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 111 ;10.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;17.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 119 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1017 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 172 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6CEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDBID 5KH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NA-FORMATE, 0.2 M NA-ACETATE REMARK 280 PH4.6, 5 % ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1107 REMARK 465 SER A 1108 REMARK 465 GLU A 1209 REMARK 465 ASP A 1210 REMARK 465 MET A 1211 REMARK 465 PRO A 1212 REMARK 465 HIS A 1213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A1122 CD1 REMARK 470 ILE A1177 CD1 REMARK 470 ILE A1201 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1135 -71.63 -92.59 REMARK 500 ILE A1157 -101.03 -95.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1113 SG REMARK 620 2 HIS A1115 ND1 109.8 REMARK 620 3 CYS A1183 SG 115.7 98.0 REMARK 620 4 CYS A1186 SG 112.8 105.5 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1133 SG REMARK 620 2 CYS A1136 SG 109.3 REMARK 620 3 CYS A1153 SG 112.7 115.4 REMARK 620 4 HIS A1160 ND1 106.4 109.2 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1145 SG REMARK 620 2 CYS A1148 SG 116.0 REMARK 620 3 HIS A1164 NE2 111.7 99.4 REMARK 620 4 HIS A1170 ND1 107.1 110.7 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EYJ A 1307 DBREF 6CEF A 1109 1213 UNP Q9UBN7 HDAC6_HUMAN 1109 1213 SEQADV 6CEF GLY A 1107 UNP Q9UBN7 EXPRESSION TAG SEQADV 6CEF SER A 1108 UNP Q9UBN7 EXPRESSION TAG SEQRES 1 A 107 GLY SER PRO LEU PRO TRP CYS PRO HIS LEU VAL ALA VAL SEQRES 2 A 107 CYS PRO ILE PRO ALA ALA GLY LEU ASP VAL THR GLN PRO SEQRES 3 A 107 CYS GLY ASP CYS GLY THR ILE GLN GLU ASN TRP VAL CYS SEQRES 4 A 107 LEU SER CYS TYR GLN VAL TYR CYS GLY ARG TYR ILE ASN SEQRES 5 A 107 GLY HIS MET LEU GLN HIS HIS GLY ASN SER GLY HIS PRO SEQRES 6 A 107 LEU VAL LEU SER TYR ILE ASP LEU SER ALA TRP CYS TYR SEQRES 7 A 107 TYR CYS GLN ALA TYR VAL HIS HIS GLN ALA LEU LEU ASP SEQRES 8 A 107 VAL LYS ASN ILE ALA HIS GLN ASN LYS PHE GLY GLU ASP SEQRES 9 A 107 MET PRO HIS HET ZN A1301 1 HET ZN A1302 1 HET ZN A1303 1 HET UNX A1304 1 HET UNX A1305 1 HET UNX A1306 1 HET EYJ A1307 14 HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM EYJ 3-(1,3-BENZOTHIAZOL-2-YL)PROPANOIC ACID FORMUL 2 ZN 3(ZN 2+) FORMUL 5 UNX 3(X) FORMUL 8 EYJ C10 H9 N O2 S FORMUL 9 HOH *90(H2 O) HELIX 1 AA1 HIS A 1115 VAL A 1119 5 5 HELIX 2 AA2 GLY A 1159 GLY A 1169 1 11 HELIX 3 AA3 HIS A 1192 ALA A 1194 5 3 HELIX 4 AA4 LEU A 1195 GLY A 1208 1 14 SHEET 1 AA1 5 VAL A1151 CYS A1153 0 SHEET 2 AA1 5 ASN A1142 CYS A1145 -1 N TRP A1143 O TYR A1152 SHEET 3 AA1 5 LEU A1172 SER A1175 -1 O LEU A1174 N VAL A1144 SHEET 4 AA1 5 ALA A1181 CYS A1183 -1 O TRP A1182 N VAL A1173 SHEET 5 AA1 5 ALA A1188 TYR A1189 -1 O ALA A1188 N CYS A1183 LINK SG CYS A1113 ZN ZN A1303 1555 1555 2.31 LINK ND1 HIS A1115 ZN ZN A1303 1555 1555 2.15 LINK SG CYS A1133 ZN ZN A1302 1555 1555 2.37 LINK SG CYS A1136 ZN ZN A1302 1555 1555 2.32 LINK SG CYS A1145 ZN ZN A1301 1555 1555 2.30 LINK SG CYS A1148 ZN ZN A1301 1555 1555 2.32 LINK SG CYS A1153 ZN ZN A1302 1555 1555 2.32 LINK ND1 HIS A1160 ZN ZN A1302 1555 1555 2.09 LINK NE2 HIS A1164 ZN ZN A1301 1555 1555 2.05 LINK ND1 HIS A1170 ZN ZN A1301 1555 1555 2.11 LINK SG CYS A1183 ZN ZN A1303 1555 1555 2.31 LINK SG CYS A1186 ZN ZN A1303 1555 1555 2.34 SITE 1 AC1 4 CYS A1145 CYS A1148 HIS A1164 HIS A1170 SITE 1 AC2 4 CYS A1133 CYS A1136 CYS A1153 HIS A1160 SITE 1 AC3 4 CYS A1113 HIS A1115 CYS A1183 CYS A1186 SITE 1 AC4 7 TRP A1143 GLY A1154 ARG A1155 TRP A1182 SITE 2 AC4 7 TYR A1184 TYR A1189 HOH A1413 CRYST1 40.700 44.210 56.030 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017848 0.00000 TER 793 GLY A1208 HETATM 794 ZN ZN A1301 13.026 -2.655 2.476 1.00 9.71 ZN HETATM 795 ZN ZN A1302 12.475 8.186 11.376 1.00 10.73 ZN HETATM 796 ZN ZN A1303 -0.139 -6.004 -1.366 1.00 9.80 ZN HETATM 797 UNK UNX A1304 2.279 -15.864 -2.053 1.00 20.69 X HETATM 798 UNK UNX A1305 14.800 4.341 3.122 1.00 17.57 X HETATM 799 UNK UNX A1306 -1.135 -13.429 10.358 1.00 18.65 X HETATM 800 C1 EYJ A1307 3.351 2.177 8.296 1.00 18.93 C HETATM 801 C2 EYJ A1307 2.360 1.583 7.379 1.00 21.76 C HETATM 802 C3 EYJ A1307 0.985 2.156 7.507 1.00 22.04 C HETATM 803 C6 EYJ A1307 -2.932 4.475 6.745 1.00 26.53 C HETATM 804 C4 EYJ A1307 -0.799 3.383 7.027 1.00 24.01 C HETATM 805 O1 EYJ A1307 3.093 4.332 9.218 1.00 13.81 O HETATM 806 C EYJ A1307 3.532 3.668 8.273 1.00 16.31 C HETATM 807 O EYJ A1307 4.243 4.157 7.275 1.00 13.53 O HETATM 808 S EYJ A1307 -0.214 1.334 8.481 1.00 23.46 S HETATM 809 C9 EYJ A1307 -1.405 2.478 7.906 1.00 21.64 C HETATM 810 N EYJ A1307 0.577 3.183 6.826 1.00 19.92 N HETATM 811 C8 EYJ A1307 -2.757 2.577 8.223 1.00 25.32 C HETATM 812 C7 EYJ A1307 -3.512 3.578 7.632 1.00 25.58 C HETATM 813 C5 EYJ A1307 -1.575 4.383 6.430 1.00 24.69 C HETATM 814 O HOH A1401 5.296 7.161 20.747 1.00 27.41 O HETATM 815 O HOH A1402 6.186 -14.957 22.228 1.00 29.60 O HETATM 816 O HOH A1403 20.487 9.725 10.174 1.00 28.33 O HETATM 817 O HOH A1404 17.463 -8.361 11.581 1.00 21.48 O HETATM 818 O HOH A1405 13.081 -9.957 24.853 1.00 26.74 O HETATM 819 O HOH A1406 -4.172 0.469 -3.525 1.00 34.82 O HETATM 820 O HOH A1407 -2.768 -2.392 13.401 1.00 35.50 O HETATM 821 O HOH A1408 7.261 -16.138 4.450 1.00 25.09 O HETATM 822 O HOH A1409 3.536 2.759 -4.093 1.00 13.68 O HETATM 823 O HOH A1410 8.191 -6.138 1.905 1.00 10.15 O HETATM 824 O HOH A1411 4.350 -1.521 22.264 1.00 21.38 O HETATM 825 O HOH A1412 17.416 6.704 19.895 1.00 11.76 O HETATM 826 O HOH A1413 6.209 5.916 7.659 1.00 8.52 O HETATM 827 O HOH A1414 4.952 0.518 14.762 1.00 17.75 O HETATM 828 O HOH A1415 7.431 10.054 4.344 1.00 18.19 O HETATM 829 O HOH A1416 7.374 -19.669 13.698 1.00 32.62 O HETATM 830 O HOH A1417 18.967 -4.457 4.434 1.00 15.61 O HETATM 831 O HOH A1418 4.878 11.427 8.127 1.00 30.67 O HETATM 832 O HOH A1419 15.027 -6.134 21.974 1.00 27.63 O HETATM 833 O HOH A1420 7.767 -14.693 0.054 1.00 23.57 O HETATM 834 O HOH A1421 11.639 0.036 17.636 1.00 11.00 O HETATM 835 O HOH A1422 19.377 4.798 13.760 1.00 19.31 O HETATM 836 O HOH A1423 17.748 1.122 12.309 1.00 10.16 O HETATM 837 O HOH A1424 9.679 -8.124 27.149 1.00 15.10 O HETATM 838 O HOH A1425 6.090 6.703 -0.125 1.00 27.22 O HETATM 839 O HOH A1426 0.780 3.707 0.024 1.00 30.12 O HETATM 840 O HOH A1427 11.621 3.135 -5.641 1.00 9.80 O HETATM 841 O HOH A1428 12.974 -13.490 18.619 1.00 16.12 O HETATM 842 O HOH A1429 9.934 -1.096 20.784 1.00 12.23 O HETATM 843 O HOH A1430 15.064 -5.438 13.897 1.00 8.98 O HETATM 844 O HOH A1431 -10.927 -9.905 5.414 1.00 20.57 O HETATM 845 O HOH A1432 12.571 -6.576 23.235 1.00 14.96 O HETATM 846 O HOH A1433 10.902 -15.653 2.047 1.00 20.95 O HETATM 847 O HOH A1434 -2.742 4.453 2.902 1.00 28.78 O HETATM 848 O HOH A1435 17.846 -1.674 20.331 1.00 20.51 O HETATM 849 O HOH A1436 1.698 -12.906 -3.138 1.00 13.65 O HETATM 850 O HOH A1437 3.571 12.987 10.973 1.00 20.82 O HETATM 851 O HOH A1438 3.552 6.348 13.358 1.00 14.16 O HETATM 852 O HOH A1439 -4.530 1.270 11.519 1.00 31.46 O HETATM 853 O HOH A1440 11.660 1.224 20.914 1.00 15.00 O HETATM 854 O HOH A1441 18.146 -3.751 10.410 1.00 18.19 O HETATM 855 O HOH A1442 17.223 -9.249 18.792 1.00 23.15 O HETATM 856 O HOH A1443 -1.364 -8.044 9.957 1.00 9.04 O HETATM 857 O HOH A1444 14.794 -1.321 -4.465 1.00 30.19 O HETATM 858 O HOH A1445 14.975 -4.930 -3.704 1.00 22.54 O HETATM 859 O HOH A1446 10.662 -3.113 -5.128 1.00 23.77 O HETATM 860 O HOH A1447 10.608 10.987 18.032 1.00 32.92 O HETATM 861 O HOH A1448 15.759 -6.233 11.409 1.00 13.30 O HETATM 862 O HOH A1449 -2.741 -18.312 5.125 1.00 15.79 O HETATM 863 O HOH A1450 9.936 -14.586 6.075 1.00 35.19 O HETATM 864 O HOH A1451 1.745 -12.638 -6.069 1.00 20.77 O HETATM 865 O HOH A1452 14.143 8.862 0.094 1.00 24.58 O HETATM 866 O HOH A1453 -3.048 -18.696 0.272 1.00 20.70 O HETATM 867 O HOH A1454 -1.340 -9.430 13.546 1.00 16.90 O HETATM 868 O HOH A1455 2.189 -3.979 -7.570 1.00 18.12 O HETATM 869 O HOH A1456 5.594 -18.184 8.212 1.00 20.65 O HETATM 870 O HOH A1457 7.438 -14.959 7.973 1.00 15.70 O HETATM 871 O HOH A1458 4.201 -8.420 -6.297 1.00 11.08 O HETATM 872 O HOH A1459 6.418 3.381 20.140 1.00 21.99 O HETATM 873 O HOH A1460 20.695 -14.840 7.711 1.00 22.24 O HETATM 874 O HOH A1461 18.522 -16.392 7.213 1.00 21.15 O HETATM 875 O HOH A1462 -3.477 -6.905 11.227 1.00 14.64 O HETATM 876 O HOH A1463 5.923 -16.282 19.246 1.00 20.15 O HETATM 877 O HOH A1464 17.559 0.129 9.639 1.00 10.69 O HETATM 878 O HOH A1465 14.487 -12.472 21.146 1.00 29.55 O HETATM 879 O HOH A1466 12.818 -17.062 7.214 1.00 28.59 O HETATM 880 O HOH A1467 9.228 1.433 18.013 1.00 10.07 O HETATM 881 O HOH A1468 15.878 -15.420 13.164 1.00 28.42 O HETATM 882 O HOH A1469 0.982 0.275 14.612 1.00 24.47 O HETATM 883 O HOH A1470 14.924 -12.510 17.197 1.00 20.72 O HETATM 884 O HOH A1471 -6.878 -3.213 6.088 1.00 15.00 O HETATM 885 O HOH A1472 18.759 1.737 7.940 1.00 23.96 O HETATM 886 O HOH A1473 13.424 8.730 20.458 1.00 20.07 O HETATM 887 O HOH A1474 18.866 -6.145 7.575 1.00 22.83 O HETATM 888 O HOH A1475 8.667 13.831 15.218 1.00 22.54 O HETATM 889 O HOH A1476 -0.672 -18.268 -1.741 1.00 38.37 O HETATM 890 O HOH A1477 7.663 -0.449 19.816 1.00 30.38 O HETATM 891 O HOH A1478 -0.023 3.742 2.847 1.00 22.30 O HETATM 892 O HOH A1479 -1.112 -1.920 -6.153 1.00 23.91 O HETATM 893 O HOH A1480 13.552 13.410 10.787 1.00 21.91 O HETATM 894 O HOH A1481 -8.080 -3.455 8.536 1.00 27.80 O HETATM 895 O HOH A1482 19.571 -1.664 9.443 1.00 23.67 O HETATM 896 O HOH A1483 15.905 -15.072 15.730 1.00 26.96 O HETATM 897 O HOH A1484 16.791 -5.535 23.932 1.00 23.64 O HETATM 898 O HOH A1485 -2.647 -4.043 -5.050 1.00 16.06 O HETATM 899 O HOH A1486 0.489 -2.504 -7.860 1.00 26.77 O HETATM 900 O HOH A1487 20.043 2.192 13.230 1.00 24.65 O HETATM 901 O HOH A1488 12.106 -9.069 27.166 1.00 31.93 O HETATM 902 O HOH A1489 16.118 -0.413 -2.575 1.00 36.79 O HETATM 903 O HOH A1490 7.084 -16.892 2.090 1.00 34.73 O CONECT 42 796 CONECT 56 796 CONECT 179 795 CONECT 205 795 CONECT 282 794 CONECT 302 794 CONECT 348 795 CONECT 402 795 CONECT 440 794 CONECT 479 794 CONECT 584 796 CONECT 614 796 CONECT 794 282 302 440 479 CONECT 795 179 205 348 402 CONECT 796 42 56 584 614 CONECT 800 801 806 CONECT 801 800 802 CONECT 802 801 808 810 CONECT 803 812 813 CONECT 804 809 810 813 CONECT 805 806 CONECT 806 800 805 807 CONECT 807 806 CONECT 808 802 809 CONECT 809 804 808 811 CONECT 810 802 804 CONECT 811 809 812 CONECT 812 803 811 CONECT 813 803 804 MASTER 330 0 7 4 5 0 5 6 889 1 29 9 END