HEADER OXIDOREDUCTASE 20-FEB-18 6CGM TITLE X-RAY CRYSTAL STRUCTURE OF BACILLUS SUBTILIS RIBONUCLEOTIDE REDUCTASE TITLE 2 NRDE ALPHA SUBUNIT (NUCLEOTIDE FREE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: \CF2 \CF0; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_3413, CFD21_09965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PE-SUMO KEYWDS RIBONUCLEOTIDE REDUCTASE, ALLOSTERY, NUCLEOTIDE METABOLISM, KEYWDS 2 OXIDOREDUCTASE, DAMP EXPDTA X-RAY DIFFRACTION AUTHOR A.O.MAGGIOLO,A.K.BOAL REVDAT 3 13-MAR-24 6CGM 1 REMARK REVDAT 2 23-MAY-18 6CGM 1 JRNL REVDAT 1 09-MAY-18 6CGM 0 JRNL AUTH M.J.PARKER,A.O.MAGGIOLO,W.C.THOMAS,A.KIM,S.P.MEISBURGER, JRNL AUTH 2 N.ANDO,A.K.BOAL,J.STUBBE JRNL TITL AN ENDOGENOUS DAMP LIGAND INBACILLUS SUBTILISCLASS IB RNR JRNL TITL 2 PROMOTES ASSEMBLY OF A NONCANONICAL DIMER FOR REGULATION BY JRNL TITL 3 DATP. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E4594 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29712847 JRNL DOI 10.1073/PNAS.1800356115 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 52214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5464 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5152 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7349 ; 1.310 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11874 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;36.935 ;24.649 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 994 ;13.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.177 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 790 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6126 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1285 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6CGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.0), 10% (W/V) PEG REMARK 280 6000, 9 MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 148.07100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.42750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 222.10650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.42750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.03550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.42750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 222.10650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.42750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.03550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 148.07100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1121 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 GLN A 5 REMARK 465 ARG A 163 REMARK 465 ARG A 164 REMARK 465 GLY A 165 REMARK 465 LEU A 195 REMARK 465 GLY A 196 REMARK 465 ASP A 215 REMARK 465 VAL A 216 REMARK 465 GLU A 217 REMARK 465 ASN A 218 REMARK 465 ALA A 219 REMARK 465 THR A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 235 REMARK 465 TYR A 236 REMARK 465 ALA A 237 REMARK 465 ASP A 238 REMARK 465 GLN A 239 REMARK 465 MET A 240 REMARK 465 GLY A 241 REMARK 465 GLN A 242 REMARK 465 ARG A 243 REMARK 465 GLN A 244 REMARK 465 GLU A 271 REMARK 465 ASP A 272 REMARK 465 VAL A 273 REMARK 465 ARG A 274 REMARK 465 ASP A 689 REMARK 465 THR A 690 REMARK 465 GLY A 691 REMARK 465 GLN A 692 REMARK 465 ASP A 693 REMARK 465 SER A 694 REMARK 465 CYS A 695 REMARK 465 LEU A 696 REMARK 465 SER A 697 REMARK 465 CYS A 698 REMARK 465 VAL A 699 REMARK 465 VAL A 700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 40 -57.34 -126.18 REMARK 500 SER A 169 -74.16 -65.00 REMARK 500 ILE A 213 73.64 -100.24 REMARK 500 ASP A 257 3.17 -58.98 REMARK 500 ASP A 295 90.24 -47.06 REMARK 500 ARG A 575 -36.34 -131.42 REMARK 500 SER A 593 -139.85 56.61 REMARK 500 TYR A 626 53.75 -90.51 REMARK 500 GLN A 650 -131.54 -92.96 REMARK 500 TYR A 683 -144.77 -102.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1225 DISTANCE = 6.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 803 DBREF1 6CGM A 1 700 UNP A0A162Q3J9_BACIU DBREF2 6CGM A A0A162Q3J9 1 700 SEQRES 1 A 700 MET SER GLN ASN GLN VAL PRO LYS TRP ILE GLN LEU ASN SEQRES 2 A 700 ASN GLU ILE MET ILE GLN LYS ASP GLY LYS PHE GLN PHE SEQRES 3 A 700 ASP LYS ASP LYS GLU ALA VAL HIS SER TYR PHE VAL ASP SEQRES 4 A 700 TYR ILE ASN GLN ASN THR VAL PHE PHE HIS ASN LEU LYS SEQRES 5 A 700 GLU LYS LEU ASP TYR LEU VAL GLU ASN GLN TYR TYR GLU SEQRES 6 A 700 GLU GLU PHE LEU SER LEU TYR SER PHE GLU ASP ILE LYS SEQRES 7 A 700 GLU VAL PHE LYS THR ALA TYR ALA LYS LYS PHE ARG PHE SEQRES 8 A 700 PRO SER PHE MET SER ALA PHE LYS PHE TYR ASN ASP TYR SEQRES 9 A 700 ALA LEU LYS THR ASN ASP LYS LYS LYS ILE LEU GLU ARG SEQRES 10 A 700 TYR GLU ASP ARG ILE SER ILE VAL ALA LEU PHE PHE ALA SEQRES 11 A 700 ASN GLY ASP THR GLU LYS ALA LYS GLU TYR VAL ASN LEU SEQRES 12 A 700 MET ILE ASN GLN GLU TYR GLN PRO SER THR PRO THR PHE SEQRES 13 A 700 LEU ASN ALA GLY ARG LYS ARG ARG GLY GLU LEU VAL SER SEQRES 14 A 700 CYS PHE LEU LEU GLU VAL ASN ASP SER LEU ASN ASP ILE SEQRES 15 A 700 SER ARG ALA ILE ASP ILE SER MET GLN LEU SER LYS LEU SEQRES 16 A 700 GLY GLY GLY VAL SER LEU ASN LEU SER LYS LEU ARG ALA SEQRES 17 A 700 LYS GLY GLU ALA ILE LYS ASP VAL GLU ASN ALA THR LYS SEQRES 18 A 700 GLY VAL VAL GLY VAL MET LYS LEU LEU ASP ASN ALA PHE SEQRES 19 A 700 ARG TYR ALA ASP GLN MET GLY GLN ARG GLN GLY SER GLY SEQRES 20 A 700 ALA ALA TYR LEU ASN ILE PHE HIS ARG ASP ILE ASN ASP SEQRES 21 A 700 PHE LEU ASP THR LYS LYS ILE SER ALA ASP GLU ASP VAL SEQRES 22 A 700 ARG VAL LYS THR LEU SER ILE GLY VAL VAL ILE PRO ASP SEQRES 23 A 700 LYS PHE VAL GLU LEU ALA ARG GLU ASP LYS ALA ALA TYR SEQRES 24 A 700 VAL PHE TYR PRO HIS THR ILE TYR LYS GLU TYR GLY GLN SEQRES 25 A 700 HIS MET ASP GLU MET ASP MET ASN GLU MET TYR ASP LYS SEQRES 26 A 700 PHE VAL ASP ASN PRO ARG VAL LYS LYS GLU LYS ILE ASN SEQRES 27 A 700 PRO ARG LYS LEU LEU GLU LYS LEU ALA MET LEU ARG SER SEQRES 28 A 700 GLU SER GLY TYR PRO TYR ILE MET PHE GLN ASP ASN VAL SEQRES 29 A 700 ASN LYS VAL HIS ALA ASN ASN HIS ILE SER LYS VAL LYS SEQRES 30 A 700 PHE SER ASN LEU CYS SER GLU VAL LEU GLN ALA SER GLN SEQRES 31 A 700 VAL SER SER TYR THR ASP TYR ASP GLU GLU ASP GLU ILE SEQRES 32 A 700 GLY LEU ASP ILE SER CYS ASN LEU GLY SER LEU ASN ILE SEQRES 33 A 700 LEU ASN VAL MET GLU HIS LYS SER ILE GLU LYS THR VAL SEQRES 34 A 700 LYS LEU ALA THR ASP SER LEU THR HIS VAL SER GLU THR SEQRES 35 A 700 THR ASP ILE ARG ASN ALA PRO ALA VAL ARG ARG ALA ASN SEQRES 36 A 700 LYS ALA MET LYS SER ILE GLY LEU GLY ALA MET ASN LEU SEQRES 37 A 700 HIS GLY TYR LEU ALA GLN ASN GLY ILE ALA TYR GLU SER SEQRES 38 A 700 PRO GLU ALA ARG ASP PHE ALA ASN THR PHE PHE MET MET SEQRES 39 A 700 VAL ASN PHE TYR SER ILE GLN ARG SER ALA GLU ILE ALA SEQRES 40 A 700 LYS GLU LYS GLY GLU THR PHE ASP GLN TYR GLU GLY SER SEQRES 41 A 700 THR TYR ALA THR GLY GLU TYR PHE ASP LYS TYR VAL SER SEQRES 42 A 700 THR ASP PHE SER PRO LYS TYR GLU LYS ILE ALA ASN LEU SEQRES 43 A 700 PHE GLU GLY MET HIS ILE PRO THR THR GLU ASP TRP LYS SEQRES 44 A 700 LYS LEU LYS ALA PHE VAL ALA GLU HIS GLY MET TYR HIS SEQRES 45 A 700 SER TYR ARG LEU CYS ILE ALA PRO THR GLY SER ILE SER SEQRES 46 A 700 TYR VAL GLN SER SER THR ALA SER VAL MET PRO ILE MET SEQRES 47 A 700 GLU ARG ILE GLU GLU ARG THR TYR GLY ASN SER LYS THR SEQRES 48 A 700 TYR TYR PRO MET PRO GLY LEU ALA SER ASN ASN TRP PHE SEQRES 49 A 700 PHE TYR LYS GLU ALA TYR ASP MET ASP MET PHE LYS VAL SEQRES 50 A 700 VAL ASP MET ILE ALA THR ILE GLN GLN HIS ILE ASP GLN SEQRES 51 A 700 GLY ILE SER PHE THR LEU PHE LEU LYS ASP THR MET THR SEQRES 52 A 700 THR ARG ASP LEU ASN ARG ILE ASP LEU TYR ALA HIS HIS SEQRES 53 A 700 ARG GLY ILE LYS THR ILE TYR TYR ALA ARG THR LYS ASP SEQRES 54 A 700 THR GLY GLN ASP SER CYS LEU SER CYS VAL VAL HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *325(H2 O) HELIX 1 AA1 PRO A 7 GLU A 15 1 9 HELIX 2 AA2 ILE A 16 ILE A 18 5 3 HELIX 3 AA3 ASP A 27 TYR A 40 1 14 HELIX 4 AA4 ASN A 50 ASN A 61 1 12 HELIX 5 AA5 GLU A 66 LEU A 71 1 6 HELIX 6 AA6 SER A 73 LYS A 87 1 15 HELIX 7 AA7 SER A 93 TYR A 104 1 12 HELIX 8 AA8 ARG A 117 ASN A 131 1 15 HELIX 9 AA9 ASP A 133 ASN A 146 1 14 HELIX 10 AB1 SER A 152 ALA A 159 1 8 HELIX 11 AB2 SER A 178 LYS A 194 1 17 HELIX 12 AB3 VAL A 223 PHE A 234 1 12 HELIX 13 AB4 ASP A 257 THR A 264 1 8 HELIX 14 AB5 PRO A 285 GLU A 294 1 10 HELIX 15 AB6 TYR A 302 GLY A 311 1 10 HELIX 16 AB7 HIS A 313 MET A 317 5 5 HELIX 17 AB8 ASP A 318 ASN A 329 1 12 HELIX 18 AB9 ASN A 338 GLY A 354 1 17 HELIX 19 AC1 GLN A 361 LYS A 366 1 6 HELIX 20 AC2 ILE A 416 LYS A 423 1 8 HELIX 21 AC3 SER A 424 THR A 443 1 20 HELIX 22 AC4 ALA A 448 LYS A 459 1 12 HELIX 23 AC5 ASN A 467 ASN A 475 1 9 HELIX 24 AC6 SER A 481 GLY A 511 1 31 HELIX 25 AC7 GLN A 516 GLY A 519 5 4 HELIX 26 AC8 SER A 520 GLY A 525 1 6 HELIX 27 AC9 PHE A 528 THR A 534 1 7 HELIX 28 AD1 TYR A 540 PHE A 547 1 8 HELIX 29 AD2 THR A 554 GLY A 569 1 16 HELIX 30 AD3 SER A 583 GLN A 588 1 6 HELIX 31 AD4 ALA A 619 TYR A 626 5 8 HELIX 32 AD5 GLU A 628 MET A 632 5 5 HELIX 33 AD6 ASP A 633 GLN A 646 1 14 HELIX 34 AD7 THR A 663 ARG A 677 1 15 SHEET 1 AA1 3 TYR A 149 PRO A 151 0 SHEET 2 AA1 3 ILE A 407 ASN A 415 -1 O SER A 413 N GLN A 150 SHEET 3 AA1 3 ILE A 461 MET A 466 1 O GLY A 464 N GLY A 412 SHEET 1 AA2 8 TYR A 149 PRO A 151 0 SHEET 2 AA2 8 ILE A 407 ASN A 415 -1 O SER A 413 N GLN A 150 SHEET 3 AA2 8 CYS A 170 GLU A 174 -1 N LEU A 172 O ILE A 407 SHEET 4 AA2 8 GLY A 198 ASN A 202 1 O SER A 200 N LEU A 173 SHEET 5 AA2 8 SER A 246 ASN A 252 1 O TYR A 250 N LEU A 201 SHEET 6 AA2 8 SER A 279 ILE A 284 1 O SER A 279 N GLY A 247 SHEET 7 AA2 8 TYR A 357 PHE A 360 1 O MET A 359 N ILE A 284 SHEET 8 AA2 8 THR A 681 ILE A 682 -1 O ILE A 682 N ILE A 358 SHEET 1 AA3 2 ALA A 298 PHE A 301 0 SHEET 2 AA3 2 LYS A 334 ILE A 337 -1 O ILE A 337 N ALA A 298 SHEET 1 AA4 2 ILE A 601 TYR A 606 0 SHEET 2 AA4 2 SER A 609 PRO A 614 -1 O THR A 611 N ARG A 604 SHEET 1 AA5 2 LEU A 656 LEU A 658 0 SHEET 2 AA5 2 ALA A 685 THR A 687 1 O ARG A 686 N LEU A 658 CISPEP 1 TYR A 355 PRO A 356 0 2.20 SITE 1 AC1 4 GLU A 65 GLU A 66 GLU A 67 LYS A 162 SITE 1 AC2 6 PHE A 89 PHE A 91 PRO A 92 GLN A 147 SITE 2 AC2 6 VAL A 587 SER A 589 SITE 1 AC3 5 ALA A 347 ARG A 350 LEU A 656 LEU A 658 SITE 2 AC3 5 ASP A 671 CRYST1 72.855 72.855 296.142 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003377 0.00000