HEADER TRANSCRIPTION/INHIBITOR 25-FEB-18 6CIY TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH THE INHIBITOR JWG069 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, BRD4, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,S.C.BLACKLOW REVDAT 4 04-OCT-23 6CIY 1 REMARK REVDAT 3 01-JAN-20 6CIY 1 REMARK REVDAT 2 03-OCT-18 6CIY 1 JRNL REVDAT 1 29-AUG-18 6CIY 0 JRNL AUTH J.WANG,T.ERAZO,F.M.FERGUSON,D.L.BUCKLEY,N.GOMEZ, JRNL AUTH 2 P.MUNOZ-GUARDIOLA,N.DIEGUEZ-MARTINEZ,X.DENG,M.HAO, JRNL AUTH 3 W.MASSEFSKI,O.FEDOROV,N.K.OFFEI-ADDO,P.M.PARK,L.DAI, JRNL AUTH 4 A.DIBONA,K.BECHT,N.D.KIM,M.R.MCKEOWN,J.M.ROBERTS,J.ZHANG, JRNL AUTH 5 T.SIM,D.R.ALESSI,J.E.BRADNER,J.M.LIZCANO,S.C.BLACKLOW,J.QI, JRNL AUTH 6 X.XU,N.S.GRAY JRNL TITL STRUCTURAL AND ATROPISOMERIC FACTORS GOVERNING THE JRNL TITL 2 SELECTIVITY OF PYRIMIDO-BENZODIAZIPINONES AS INHIBITORS OF JRNL TITL 3 KINASES AND BROMODOMAINS. JRNL REF ACS CHEM. BIOL. V. 13 2438 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 30102854 JRNL DOI 10.1021/ACSCHEMBIO.7B00638 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 16364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3065 - 3.0523 0.99 2844 133 0.1552 0.1719 REMARK 3 2 3.0523 - 2.4228 0.99 2672 165 0.1636 0.2059 REMARK 3 3 2.4228 - 2.1166 0.99 2640 138 0.1609 0.2202 REMARK 3 4 2.1166 - 1.9231 0.97 2589 134 0.1649 0.1901 REMARK 3 5 1.9231 - 1.7853 0.94 2523 119 0.2019 0.2565 REMARK 3 6 1.7853 - 1.6800 0.88 2279 128 0.3776 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 37.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.28230 REMARK 3 B22 (A**2) : -3.29690 REMARK 3 B33 (A**2) : -1.98530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1133 REMARK 3 ANGLE : 1.655 1541 REMARK 3 CHIRALITY : 0.070 160 REMARK 3 PLANARITY : 0.006 197 REMARK 3 DIHEDRAL : 14.311 445 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 42:51) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2560 12.3977 -17.1856 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.0894 REMARK 3 T33: 0.0879 T12: -0.0248 REMARK 3 T13: 0.0151 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1472 L22: 0.4616 REMARK 3 L33: 0.5506 L12: 0.0293 REMARK 3 L13: -0.0495 L23: 0.2665 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.0029 S13: 0.0421 REMARK 3 S21: -0.1853 S22: 0.0822 S23: -0.2498 REMARK 3 S31: -0.2233 S32: -0.0359 S33: -0.0339 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:68) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7296 -7.5988 -25.2717 REMARK 3 T TENSOR REMARK 3 T11: 0.1514 T22: 0.0927 REMARK 3 T33: 0.1083 T12: -0.0221 REMARK 3 T13: 0.0248 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.0348 L22: 0.6237 REMARK 3 L33: 0.3170 L12: -0.0878 REMARK 3 L13: -0.0805 L23: -0.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0781 S13: -0.0188 REMARK 3 S21: -0.2034 S22: -0.0427 S23: -0.2100 REMARK 3 S31: 0.0758 S32: -0.1279 S33: 0.0026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 69:75) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5070 -6.6903 -13.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1158 REMARK 3 T33: 0.1044 T12: -0.0112 REMARK 3 T13: 0.0139 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3497 L22: 1.4861 REMARK 3 L33: 0.8797 L12: 0.0410 REMARK 3 L13: -0.1712 L23: 0.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0784 S13: -0.0188 REMARK 3 S21: 0.0231 S22: -0.1289 S23: -0.2082 REMARK 3 S31: 0.0637 S32: -0.1140 S33: 0.0773 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 76:83) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8491 -0.4867 -5.6982 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0889 REMARK 3 T33: 0.0859 T12: -0.0105 REMARK 3 T13: 0.0069 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.2286 L22: 0.3063 REMARK 3 L33: 0.0189 L12: -0.0320 REMARK 3 L13: -0.0060 L23: -0.0730 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.0329 S13: 0.0309 REMARK 3 S21: 0.0609 S22: -0.1532 S23: 0.2428 REMARK 3 S31: 0.0011 S32: -0.2294 S33: 0.0390 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 84:96) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4967 13.5521 -6.5024 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0878 REMARK 3 T33: 0.1165 T12: 0.0021 REMARK 3 T13: 0.0132 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 0.0756 L22: 0.1589 REMARK 3 L33: 0.1756 L12: 0.0901 REMARK 3 L13: 0.0736 L23: 0.1100 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: -0.1280 S13: 0.2262 REMARK 3 S21: -0.0197 S22: -0.1145 S23: 0.1875 REMARK 3 S31: -0.0566 S32: -0.1882 S33: 0.0593 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:115) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0287 4.9746 -13.2188 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0611 REMARK 3 T33: 0.0675 T12: -0.0137 REMARK 3 T13: 0.0058 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3081 L22: 0.1082 REMARK 3 L33: 0.1839 L12: -0.0894 REMARK 3 L13: -0.0278 L23: 0.0507 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.0209 S13: 0.0740 REMARK 3 S21: -0.0210 S22: -0.0139 S23: 0.0753 REMARK 3 S31: 0.0360 S32: -0.0717 S33: -0.0118 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 116:121) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4180 -4.3350 -25.0791 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.0817 REMARK 3 T33: 0.0544 T12: -0.0229 REMARK 3 T13: 0.0419 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1398 L22: 0.2350 REMARK 3 L33: 0.0768 L12: 0.1806 REMARK 3 L13: 0.0998 L23: 0.1327 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.0325 S13: -0.0028 REMARK 3 S21: -0.1354 S22: -0.0946 S23: 0.0787 REMARK 3 S31: 0.1300 S32: -0.0687 S33: -0.0599 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:139) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7048 -2.0126 -8.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0725 REMARK 3 T33: 0.0781 T12: -0.0027 REMARK 3 T13: 0.0046 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.6596 L22: 0.3654 REMARK 3 L33: 0.4189 L12: 0.1786 REMARK 3 L13: 0.0752 L23: -0.1341 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.0359 S13: -0.0885 REMARK 3 S21: -0.0660 S22: 0.0189 S23: -0.0302 REMARK 3 S31: 0.1188 S32: -0.0870 S33: -0.0028 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 140:144) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4606 3.3833 6.2525 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.1716 REMARK 3 T33: 0.0854 T12: 0.0074 REMARK 3 T13: -0.0018 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.2248 L22: 0.1363 REMARK 3 L33: 0.2548 L12: 0.0181 REMARK 3 L13: -0.1951 L23: -0.1102 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0473 S13: -0.0775 REMARK 3 S21: 0.1029 S22: 0.0268 S23: 0.0436 REMARK 3 S31: -0.0029 S32: 0.2043 S33: 0.0178 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:166) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1459 -9.9536 -5.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0613 REMARK 3 T33: 0.0803 T12: 0.0124 REMARK 3 T13: 0.0282 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.5948 L22: 0.1889 REMARK 3 L33: 0.3340 L12: -0.1795 REMARK 3 L13: 0.2128 L23: -0.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.1195 S13: -0.0948 REMARK 3 S21: -0.0066 S22: -0.0401 S23: 0.0451 REMARK 3 S31: 0.2034 S32: 0.0011 S33: 0.0177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 84.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4WIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.09400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.14950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.09400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.14950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 453 O HOH A 486 2.05 REMARK 500 O THR A 166 O HOH A 301 2.05 REMARK 500 O HOH A 417 O HOH A 452 2.15 REMARK 500 O HOH A 418 O HOH A 446 2.17 REMARK 500 O HOH A 453 O HOH A 457 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 373 O HOH A 378 3644 1.96 REMARK 500 O HOH A 466 O HOH A 477 4555 2.12 REMARK 500 O HOH A 370 O HOH A 428 3644 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 69 -60.06 -121.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 529 DISTANCE = 6.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F3J A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 204 DBREF 6CIY A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 6CIY SER A 42 UNP O60885 EXPRESSION TAG SEQADV 6CIY MET A 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET F3J A 201 45 HET EDO A 202 4 HET EDO A 203 4 HET NO3 A 204 4 HETNAM F3J 11-CYCLOBUTYL-2-({2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1- HETNAM 2 F3J YL)PIPERIDINE-1-CARBONYL]PHENYL}AMINO)-5-METHYL-5,11- HETNAM 3 F3J DIHYDRO-6H-PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 F3J C34 H42 N8 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 NO3 N O3 1- FORMUL 6 HOH *229(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 SITE 1 AC1 13 TRP A 81 PRO A 82 PHE A 83 GLN A 85 SITE 2 AC1 13 LEU A 92 ASP A 96 ILE A 100 TYR A 139 SITE 3 AC1 13 ASN A 140 HOH A 311 HOH A 329 HOH A 374 SITE 4 AC1 13 HOH A 375 SITE 1 AC2 7 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC2 7 ASN A 135 HOH A 323 HOH A 326 SITE 1 AC3 5 LYS A 57 ASP A 144 ASP A 145 HOH A 355 SITE 2 AC3 5 HOH A 413 SITE 1 AC4 7 GLN A 78 PHE A 79 TRP A 81 PRO A 95 SITE 2 AC4 7 ASP A 96 LYS A 99 MET A 149 CRYST1 40.188 42.299 84.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011825 0.00000