HEADER TRANSCRIPTION/INHIBITOR 26-FEB-18 6CJ2 TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH THE INHIBITOR JWG056 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-166; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, BRD4, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,S.C.BLACKLOW REVDAT 4 04-OCT-23 6CJ2 1 REMARK REVDAT 3 16-SEP-20 6CJ2 1 JRNL REVDAT 2 01-JAN-20 6CJ2 1 REMARK REVDAT 1 06-MAR-19 6CJ2 0 JRNL AUTH J.WANG,T.ERAZO,F.M.FERGUSON,D.L.BUCKLEY,N.GOMEZ, JRNL AUTH 2 P.MUNOZ-GUARDIOLA,N.DIEGUEZ-MARTINEZ,X.DENG,M.HAO, JRNL AUTH 3 W.MASSEFSKI,O.FEDOROV,N.K.OFFEI-ADDO,P.M.PARK,L.DAI, JRNL AUTH 4 A.DIBONA,K.BECHT,N.D.KIM,M.R.MCKEOWN,J.M.ROBERTS,J.ZHANG, JRNL AUTH 5 T.SIM,D.R.ALESSI,J.E.BRADNER,J.M.LIZCANO,S.C.BLACKLOW,J.QI, JRNL AUTH 6 X.XU,N.S.GRAY JRNL TITL STRUCTURAL AND ATROPISOMERIC FACTORS GOVERNING THE JRNL TITL 2 SELECTIVITY OF PYRIMIDO-BENZODIAZIPINONES AS INHIBITORS OF JRNL TITL 3 KINASES AND BROMODOMAINS. JRNL REF ACS CHEM.BIOL. V. 13 2438 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 30102854 JRNL DOI 10.1021/ACSCHEMBIO.7B00638 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 20080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2928 - 2.8115 0.99 3074 154 0.1535 0.1616 REMARK 3 2 2.8115 - 2.2318 0.99 2931 161 0.1613 0.1973 REMARK 3 3 2.2318 - 1.9497 0.98 2869 154 0.1732 0.2035 REMARK 3 4 1.9497 - 1.7715 0.95 2761 140 0.1944 0.2576 REMARK 3 5 1.7715 - 1.6445 0.91 2615 130 0.2405 0.2669 REMARK 3 6 1.6445 - 1.5476 0.86 2476 150 0.2871 0.3327 REMARK 3 7 1.5476 - 1.4701 0.81 2319 146 0.3597 0.4418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 51.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.38460 REMARK 3 B22 (A**2) : -5.48700 REMARK 3 B33 (A**2) : -3.89770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1095 REMARK 3 ANGLE : 1.221 1498 REMARK 3 CHIRALITY : 0.071 159 REMARK 3 PLANARITY : 0.006 192 REMARK 3 DIHEDRAL : 11.463 415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 42:51) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6090 8.1159 15.8761 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.1350 REMARK 3 T33: 0.1131 T12: -0.0001 REMARK 3 T13: 0.0444 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6675 L22: 0.4037 REMARK 3 L33: 1.0249 L12: 0.2550 REMARK 3 L13: -0.3917 L23: -0.2959 REMARK 3 S TENSOR REMARK 3 S11: 0.2167 S12: -0.0667 S13: 0.0496 REMARK 3 S21: -0.0214 S22: -0.0426 S23: 0.0447 REMARK 3 S31: -0.0273 S32: 0.0952 S33: -0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:60) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6158 -8.7990 25.7613 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1275 REMARK 3 T33: 0.1105 T12: -0.0042 REMARK 3 T13: 0.0140 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7701 L22: 0.7214 REMARK 3 L33: 0.6920 L12: -0.0353 REMARK 3 L13: -0.5149 L23: -0.3228 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.0769 S13: -0.0249 REMARK 3 S21: 0.1436 S22: -0.1272 S23: 0.1134 REMARK 3 S31: 0.1013 S32: 0.0245 S33: 0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 61:76) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3683 -12.0530 9.9981 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1473 REMARK 3 T33: 0.1520 T12: 0.0202 REMARK 3 T13: 0.0000 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.3728 L22: 0.8775 REMARK 3 L33: 0.8269 L12: 0.0784 REMARK 3 L13: -0.4741 L23: -0.4010 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.0179 S13: -0.0952 REMARK 3 S21: -0.0881 S22: 0.0388 S23: -0.2187 REMARK 3 S31: 0.1957 S32: 0.0136 S33: 0.0575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 77:106) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4114 6.4877 4.4182 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.1236 REMARK 3 T33: 0.1473 T12: -0.0084 REMARK 3 T13: 0.0224 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.2577 L22: 0.7419 REMARK 3 L33: 0.7014 L12: -0.6707 REMARK 3 L13: -0.3003 L23: 0.3958 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.0749 S13: 0.1378 REMARK 3 S21: -0.1016 S22: -0.0097 S23: -0.1566 REMARK 3 S31: -0.0989 S32: 0.0958 S33: -0.0453 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 107:115) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1105 -3.5812 14.6776 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1537 REMARK 3 T33: 0.1226 T12: -0.0047 REMARK 3 T13: 0.0119 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.8409 L22: 0.7425 REMARK 3 L33: 0.7444 L12: -0.0129 REMARK 3 L13: -0.1941 L23: -0.5218 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0729 S13: 0.0262 REMARK 3 S21: -0.1160 S22: -0.0371 S23: -0.1279 REMARK 3 S31: -0.1711 S32: 0.1482 S33: -0.0063 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 116:121) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3167 -9.4091 21.3405 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1534 REMARK 3 T33: 0.0877 T12: 0.0007 REMARK 3 T13: 0.0112 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 0.4571 REMARK 3 L33: 0.3631 L12: 0.0535 REMARK 3 L13: -0.3179 L23: -0.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.0492 S13: 0.0760 REMARK 3 S21: 0.0690 S22: 0.0939 S23: 0.0791 REMARK 3 S31: 0.0804 S32: 0.1286 S33: -0.0067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:139) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1838 -4.4446 6.6832 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1137 REMARK 3 T33: 0.1059 T12: -0.0055 REMARK 3 T13: -0.0000 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.5710 L22: 1.1536 REMARK 3 L33: 1.2806 L12: -0.7477 REMARK 3 L13: 0.2173 L23: -0.9458 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.0035 S13: 0.0001 REMARK 3 S21: -0.1612 S22: -0.0434 S23: 0.0310 REMARK 3 S31: 0.0878 S32: 0.0740 S33: -0.0324 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 140:161) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0620 -5.7245 -2.8844 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1409 REMARK 3 T33: 0.1177 T12: -0.0059 REMARK 3 T13: 0.0121 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.0493 L22: 1.0197 REMARK 3 L33: 0.5120 L12: 0.0524 REMARK 3 L13: -0.1110 L23: -0.4935 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0824 S13: -0.0335 REMARK 3 S21: -0.0964 S22: 0.0340 S23: -0.1067 REMARK 3 S31: -0.0146 S32: -0.0470 S33: -0.0043 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 162:166) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1939 -22.7725 9.2544 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.1337 REMARK 3 T33: 0.2507 T12: 0.0375 REMARK 3 T13: 0.0198 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 3.1627 L22: 0.0673 REMARK 3 L33: 4.0325 L12: -0.3997 REMARK 3 L13: 1.3230 L23: -0.3389 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -0.0716 S13: -0.8060 REMARK 3 S21: -0.0484 S22: -0.1130 S23: 0.2113 REMARK 3 S31: 0.6782 S32: 0.0585 S33: -0.0960 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 78.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4WIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.40800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.33300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.70600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.33300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.40800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.70600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 64 CD OE1 NE2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 487 1.92 REMARK 500 O HOH A 303 O HOH A 367 2.09 REMARK 500 O HOH A 305 O HOH A 367 2.14 REMARK 500 O HOH A 312 O HOH A 464 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 390 O HOH A 412 2455 2.09 REMARK 500 O HOH A 421 O HOH A 429 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 155.52 -49.43 REMARK 500 ASN A 52 107.38 -161.97 REMARK 500 LEU A 94 66.15 -119.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X27 A 201 DBREF 6CJ2 A 42 166 UNP O60885 BRD4_HUMAN 42 166 SEQRES 1 A 125 SER THR ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 125 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 125 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 125 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 125 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 125 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 125 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 125 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 125 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 125 GLN LYS ILE ASN GLU LEU PRO THR HET X27 A 201 36 HETNAM X27 2-{[3-METHOXY-4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}- HETNAM 2 X27 5-METHYL-11-(PROPAN-2-YL)-5,11-DIHYDRO-6H-PYRIMIDO[4, HETNAM 3 X27 5-B][1,4]BENZODIAZEPIN-6-ONE FORMUL 2 X27 C27 H33 N7 O2 FORMUL 3 HOH *219(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 TRP A 75 1 7 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 117 1 12 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 SITE 1 AC1 13 TRP A 81 PRO A 82 GLN A 84 GLN A 85 SITE 2 AC1 13 LEU A 92 LEU A 94 ASP A 96 TYR A 139 SITE 3 AC1 13 ASN A 140 ILE A 146 HOH A 336 HOH A 341 SITE 4 AC1 13 HOH A 411 CRYST1 32.816 47.412 78.666 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012712 0.00000