HEADER LIGASE 27-FEB-18 6CK0 TITLE CRYSTAL STRUCTURE OF BIOTIN ACETYL COENZYME A CARBOXYLASE SYNTHETASE TITLE 2 FROM HELICOBACTER PYLORI WITH BOUND BIOTINYLATED ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN ACETYL COENZYME A CARBOXYLASE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: HPG27_1085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HEPYC.19466.A.B1 KEYWDS SSGCID, BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE ACTIVITY, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CK0 1 REMARK REVDAT 1 04-APR-18 6CK0 0 JRNL AUTH D.M.DRANOW,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF BIOTIN ACETYL COENZYME A CARBOXYLASE JRNL TITL 2 SYNTHETASE FROM HELICOBACTER PYLORI WITH BOUND BIOTINYLATED JRNL TITL 3 ATP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9611 - 5.4205 0.99 1577 139 0.1548 0.1919 REMARK 3 2 5.4205 - 4.3033 0.99 1571 147 0.1320 0.1532 REMARK 3 3 4.3033 - 3.7596 0.99 1570 146 0.1432 0.1703 REMARK 3 4 3.7596 - 3.4160 0.99 1587 132 0.1593 0.2338 REMARK 3 5 3.4160 - 3.1712 0.99 1582 134 0.1690 0.2223 REMARK 3 6 3.1712 - 2.9842 0.99 1536 157 0.1881 0.2371 REMARK 3 7 2.9842 - 2.8348 0.98 1578 148 0.1951 0.2404 REMARK 3 8 2.8348 - 2.7114 0.98 1562 137 0.1930 0.2923 REMARK 3 9 2.7114 - 2.6070 0.98 1561 134 0.2002 0.3119 REMARK 3 10 2.6070 - 2.5171 0.98 1582 142 0.1987 0.2832 REMARK 3 11 2.5171 - 2.4384 0.98 1549 156 0.1935 0.2499 REMARK 3 12 2.4384 - 2.3687 0.98 1533 133 0.1998 0.2826 REMARK 3 13 2.3687 - 2.3063 0.97 1553 141 0.2329 0.2612 REMARK 3 14 2.3063 - 2.2501 0.89 1428 132 0.3698 0.4300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2266 18.6958 41.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.2533 REMARK 3 T33: 0.2356 T12: -0.0157 REMARK 3 T13: 0.0084 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.4376 L22: 5.9168 REMARK 3 L33: 6.8051 L12: -0.2381 REMARK 3 L13: -0.7771 L23: -2.3769 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: 0.1681 S13: -0.1839 REMARK 3 S21: -0.4528 S22: -0.0064 S23: -0.2020 REMARK 3 S31: 0.3248 S32: -0.0918 S33: 0.0870 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8120 20.7007 56.1899 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.2407 REMARK 3 T33: 0.3942 T12: 0.0064 REMARK 3 T13: -0.0912 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.3422 L22: 3.5889 REMARK 3 L33: 3.4001 L12: -0.7767 REMARK 3 L13: 0.4273 L23: -0.8892 REMARK 3 S TENSOR REMARK 3 S11: -0.2012 S12: -0.1110 S13: 0.4841 REMARK 3 S21: 0.6374 S22: 0.1053 S23: -0.6065 REMARK 3 S31: -0.2903 S32: 0.0556 S33: 0.0622 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4868 5.0045 64.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.3358 T22: 0.3145 REMARK 3 T33: 0.3520 T12: 0.0423 REMARK 3 T13: -0.0786 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.1679 L22: 3.7073 REMARK 3 L33: 7.1586 L12: 1.7674 REMARK 3 L13: -0.0461 L23: -2.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: -0.2631 S13: -0.2678 REMARK 3 S21: 0.0578 S22: 0.0151 S23: -0.5047 REMARK 3 S31: 0.2167 S32: 0.2213 S33: 0.0428 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8607 -14.7175 31.9413 REMARK 3 T TENSOR REMARK 3 T11: 0.2507 T22: 0.2607 REMARK 3 T33: 0.2323 T12: 0.0237 REMARK 3 T13: 0.0060 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 5.0752 L22: 7.5946 REMARK 3 L33: 5.1125 L12: 0.2462 REMARK 3 L13: 0.0807 L23: 0.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: -0.0331 S13: 0.0490 REMARK 3 S21: -0.2511 S22: -0.1661 S23: -0.4773 REMARK 3 S31: 0.0518 S32: 0.2162 S33: -0.0474 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6562 -7.4769 34.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2197 REMARK 3 T33: 0.2242 T12: -0.0281 REMARK 3 T13: 0.0325 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 2.8374 L22: 4.7826 REMARK 3 L33: 3.4394 L12: -0.8858 REMARK 3 L13: 0.6054 L23: 0.8036 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0074 S13: -0.0530 REMARK 3 S21: 0.0184 S22: 0.1583 S23: 0.2077 REMARK 3 S31: -0.1545 S32: -0.1175 S33: -0.1796 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8878 -17.1126 38.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.4403 T22: 0.3153 REMARK 3 T33: 0.3233 T12: -0.0563 REMARK 3 T13: 0.0040 T23: 0.1217 REMARK 3 L TENSOR REMARK 3 L11: 5.2141 L22: 7.7241 REMARK 3 L33: 7.6097 L12: -0.6855 REMARK 3 L13: 2.4643 L23: -1.5070 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: -0.3469 S13: -0.4133 REMARK 3 S21: 0.3763 S22: 0.2639 S23: 0.7718 REMARK 3 S31: 1.0920 S32: -0.2281 S33: -0.3599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1655 3.6455 26.2288 REMARK 3 T TENSOR REMARK 3 T11: 0.3533 T22: 0.3452 REMARK 3 T33: 0.3638 T12: 0.0907 REMARK 3 T13: -0.0047 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 5.1456 L22: 7.9853 REMARK 3 L33: 2.9176 L12: 2.8958 REMARK 3 L13: 1.1734 L23: 0.8679 REMARK 3 S TENSOR REMARK 3 S11: -0.1349 S12: 0.0157 S13: 0.1548 REMARK 3 S21: -0.5556 S22: 0.2445 S23: 0.4843 REMARK 3 S31: -0.3433 S32: -0.2607 S33: -0.2463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23767 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.920 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.96 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 3L1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPYC.19466.A.B1.PS38345 AT 23.36 REMARK 280 MG/ML WAS INCUBATED WITH 6 MM MGCL2, ATP, AND BIOTIN, THEN MIXED REMARK 280 1:1 WITH JCSG+(B1): 0.1 M SODIUM CITRATE TRIBASIC/ CITRIC ACID, REMARK 280 PH=4.0, 0.8 M AMMONIUM SULFATE. CRYSTAL CRYOPROTECTED WITH 25% REMARK 280 ETHYLENE GLYCOL. TRAY: 295125B1, PUCK: XGA0-9, PH 4.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 MET A 212 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 MET B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 MET A 74 CG SD CE REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 MET B 74 CG SD CE REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ASP B 210 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O36 F5D A 301 O HOH A 401 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 41 58.15 -149.98 REMARK 500 ASN A 102 29.15 -163.38 REMARK 500 SER A 133 145.74 -175.09 REMARK 500 PHE A 179 -163.88 -115.84 REMARK 500 THR B 41 54.05 -146.94 REMARK 500 ASN B 102 24.39 -169.12 REMARK 500 SER B 133 138.96 -172.38 REMARK 500 PHE B 179 -165.27 -104.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F5D A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F5D B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-HEPYC.19466.A RELATED DB: TARGETTRACK DBREF 6CK0 A 1 212 UNP B5Z8D8 B5Z8D8_HELPG 1 212 DBREF 6CK0 B 1 212 UNP B5Z8D8 B5Z8D8_HELPG 1 212 SEQADV 6CK0 MET A -7 UNP B5Z8D8 INITIATING METHIONINE SEQADV 6CK0 ALA A -6 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A -5 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A -4 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A -3 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A -2 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A -1 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS A 0 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 MET B -7 UNP B5Z8D8 INITIATING METHIONINE SEQADV 6CK0 ALA B -6 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B -5 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B -4 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B -3 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B -2 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B -1 UNP B5Z8D8 EXPRESSION TAG SEQADV 6CK0 HIS B 0 UNP B5Z8D8 EXPRESSION TAG SEQRES 1 A 220 MET ALA HIS HIS HIS HIS HIS HIS MET ARG GLN CYS GLU SEQRES 2 A 220 LYS ARG VAL PHE ASP SER LEU PRO SER THR GLN THR TYR SEQRES 3 A 220 LEU LEU GLU LYS LEU LYS ASN ASN GLU LEU LYS ALA PRO SEQRES 4 A 220 ILE LEU ILE VAL ALA LYS ASN GLN SER THR GLY ILE GLY SEQRES 5 A 220 SER ARG GLY ASN ILE TRP GLU GLY THR LYS SER ALA LEU SEQRES 6 A 220 THR PHE SER LEU ALA LEU ASN ALA SER ASP LEU PRO LYS SEQRES 7 A 220 ASP LEU PRO MET GLN ALA ASN ALA LEU TYR LEU GLY PHE SEQRES 8 A 220 LEU PHE LYS GLU VAL LEU LYS GLU LEU GLY SER GLN THR SEQRES 9 A 220 TRP LEU LYS TRP PRO ASN ASP LEU TYR LEU GLY ASP GLN SEQRES 10 A 220 LYS ILE GLY GLY VAL LEU VAL ASN VAL TYR LYS GLY MET SEQRES 11 A 220 ARG VAL CYS GLY ILE GLY VAL ASN ARG VAL SER LYS LYS SEQRES 12 A 220 TRP ALA CYS LEU ASP ILE GLY ALA SER ASP ASP LEU ILE SEQRES 13 A 220 ILE GLU GLY PHE LEU LYS LYS ILE GLU GLU ASN LEU PHE SEQRES 14 A 220 TRP GLY GLU VAL LEU SER LYS TYR ALA LEU GLU PHE HIS SEQRES 15 A 220 ARG SER ASN SER PHE SER PHE HIS ASN ASP TRP GLY GLU SEQRES 16 A 220 LEU VAL SER LEU LYS ASP ALA GLU LEU LEU GLU ASP GLY SEQRES 17 A 220 ARG ILE CYS ILE LYS GLY LYS ILE TYR ASP ARG MET SEQRES 1 B 220 MET ALA HIS HIS HIS HIS HIS HIS MET ARG GLN CYS GLU SEQRES 2 B 220 LYS ARG VAL PHE ASP SER LEU PRO SER THR GLN THR TYR SEQRES 3 B 220 LEU LEU GLU LYS LEU LYS ASN ASN GLU LEU LYS ALA PRO SEQRES 4 B 220 ILE LEU ILE VAL ALA LYS ASN GLN SER THR GLY ILE GLY SEQRES 5 B 220 SER ARG GLY ASN ILE TRP GLU GLY THR LYS SER ALA LEU SEQRES 6 B 220 THR PHE SER LEU ALA LEU ASN ALA SER ASP LEU PRO LYS SEQRES 7 B 220 ASP LEU PRO MET GLN ALA ASN ALA LEU TYR LEU GLY PHE SEQRES 8 B 220 LEU PHE LYS GLU VAL LEU LYS GLU LEU GLY SER GLN THR SEQRES 9 B 220 TRP LEU LYS TRP PRO ASN ASP LEU TYR LEU GLY ASP GLN SEQRES 10 B 220 LYS ILE GLY GLY VAL LEU VAL ASN VAL TYR LYS GLY MET SEQRES 11 B 220 ARG VAL CYS GLY ILE GLY VAL ASN ARG VAL SER LYS LYS SEQRES 12 B 220 TRP ALA CYS LEU ASP ILE GLY ALA SER ASP ASP LEU ILE SEQRES 13 B 220 ILE GLU GLY PHE LEU LYS LYS ILE GLU GLU ASN LEU PHE SEQRES 14 B 220 TRP GLY GLU VAL LEU SER LYS TYR ALA LEU GLU PHE HIS SEQRES 15 B 220 ARG SER ASN SER PHE SER PHE HIS ASN ASP TRP GLY GLU SEQRES 16 B 220 LEU VAL SER LEU LYS ASP ALA GLU LEU LEU GLU ASP GLY SEQRES 17 B 220 ARG ILE CYS ILE LYS GLY LYS ILE TYR ASP ARG MET HET F5D A 301 46 HET SO4 A 302 5 HET EDO A 303 4 HET F5D B 301 46 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HETNAM F5D 5'-O-[(S)-({5-[(2R,3AS,4S,6AR)-2-HYDROXYHEXAHYDRO-1H- HETNAM 2 F5D THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}OXY){[(S)- HETNAM 3 F5D HYDROXY(PHOSPHONOOXY) HETNAM 4 F5D PHOSPHORYL]OXY}PHOSPHORYL]ADENOSINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 F5D 2(C20 H32 N7 O15 P3 S) FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 13 HOH *115(H2 O) HELIX 1 AA1 SER A 14 ASN A 25 1 12 HELIX 2 AA2 SER A 45 GLY A 47 5 3 HELIX 3 AA3 ASN A 64 LEU A 68 5 5 HELIX 4 AA4 PRO A 73 GLN A 75 5 3 HELIX 5 AA5 ALA A 76 LEU A 92 1 17 HELIX 6 AA6 SER A 144 GLU A 158 1 15 HELIX 7 AA7 PHE A 161 LEU A 171 1 11 HELIX 8 AA8 GLU A 172 SER A 178 5 7 HELIX 9 AA9 SER B 14 ASN B 25 1 12 HELIX 10 AB1 SER B 45 GLY B 47 5 3 HELIX 11 AB2 SER B 66 LEU B 68 5 3 HELIX 12 AB3 PRO B 73 GLN B 75 5 3 HELIX 13 AB4 ALA B 76 LEU B 92 1 17 HELIX 14 AB5 SER B 144 GLU B 158 1 15 HELIX 15 AB6 PHE B 161 HIS B 174 1 14 HELIX 16 AB7 ARG B 175 SER B 178 5 4 SHEET 1 AA1 7 GLU A 5 LEU A 12 0 SHEET 2 AA1 7 ILE A 32 GLN A 39 1 O VAL A 35 N ARG A 7 SHEET 3 AA1 7 SER A 55 LEU A 63 -1 O SER A 60 N ILE A 34 SHEET 4 AA1 7 MET A 122 VAL A 132 -1 O CYS A 125 N LEU A 61 SHEET 5 AA1 7 GLN A 109 TYR A 119 -1 N LEU A 115 O GLY A 126 SHEET 6 AA1 7 ASP A 103 LEU A 106 -1 N LEU A 106 O GLN A 109 SHEET 7 AA1 7 TRP A 97 LYS A 99 -1 N TRP A 97 O TYR A 105 SHEET 1 AA2 2 GLY A 42 ILE A 43 0 SHEET 2 AA2 2 ILE A 49 TRP A 50 -1 O TRP A 50 N GLY A 42 SHEET 1 AA3 2 SER A 180 HIS A 182 0 SHEET 2 AA3 2 LEU A 188 SER A 190 -1 O VAL A 189 N PHE A 181 SHEET 1 AA4 3 GLU A 195 LEU A 196 0 SHEET 2 AA4 3 ILE A 202 ILE A 204 -1 O CYS A 203 N GLU A 195 SHEET 3 AA4 3 LYS A 207 TYR A 209 -1 O LYS A 207 N ILE A 204 SHEET 1 AA5 7 GLU B 5 LEU B 12 0 SHEET 2 AA5 7 ILE B 32 GLN B 39 1 O VAL B 35 N ARG B 7 SHEET 3 AA5 7 SER B 55 ASN B 64 -1 O SER B 60 N ILE B 34 SHEET 4 AA5 7 MET B 122 VAL B 132 -1 O VAL B 129 N LEU B 57 SHEET 5 AA5 7 GLN B 109 TYR B 119 -1 N ASN B 117 O VAL B 124 SHEET 6 AA5 7 ASP B 103 LEU B 106 -1 N LEU B 106 O GLN B 109 SHEET 7 AA5 7 TRP B 97 LYS B 99 -1 N TRP B 97 O TYR B 105 SHEET 1 AA6 2 GLY B 42 ILE B 43 0 SHEET 2 AA6 2 ILE B 49 TRP B 50 -1 O TRP B 50 N GLY B 42 SHEET 1 AA7 2 SER B 180 HIS B 182 0 SHEET 2 AA7 2 LEU B 188 SER B 190 -1 O VAL B 189 N PHE B 181 SHEET 1 AA8 3 ALA B 194 LEU B 196 0 SHEET 2 AA8 3 ILE B 202 ILE B 204 -1 O CYS B 203 N GLU B 195 SHEET 3 AA8 3 LYS B 207 TYR B 209 -1 O LYS B 207 N ILE B 204 CISPEP 1 ALA A 30 PRO A 31 0 0.54 CISPEP 2 TRP A 100 PRO A 101 0 3.22 CISPEP 3 ALA B 30 PRO B 31 0 -4.44 CISPEP 4 TRP B 100 PRO B 101 0 3.00 SITE 1 AC1 34 SER A 14 THR A 15 GLN A 16 GLN A 39 SITE 2 AC1 34 GLY A 42 ILE A 43 GLY A 44 SER A 45 SITE 3 AC1 34 ARG A 46 ASN A 48 ILE A 49 TRP A 50 SITE 4 AC1 34 GLU A 51 THR A 58 PHE A 59 LYS A 99 SITE 5 AC1 34 ASP A 103 LYS A 110 GLY A 113 LEU A 115 SITE 6 AC1 34 ILE A 127 GLY A 128 ASN A 130 TRP A 136 SITE 7 AC1 34 SER A 180 PHE A 181 HIS A 182 ARG A 211 SITE 8 AC1 34 HOH A 401 HOH A 402 HOH A 418 HOH A 421 SITE 9 AC1 34 HOH A 439 HOH B 403 SITE 1 AC2 5 THR A 53 LYS A 54 SER A 133 LYS A 134 SITE 2 AC2 5 LYS A 135 SITE 1 AC3 5 LEU A 28 LYS A 29 PRO A 31 ILE A 32 SITE 2 AC3 5 SO4 B 304 SITE 1 AC4 31 SER B 14 THR B 15 GLN B 16 GLN B 39 SITE 2 AC4 31 GLY B 42 ILE B 43 GLY B 44 SER B 45 SITE 3 AC4 31 ASN B 48 ILE B 49 TRP B 50 GLU B 51 SITE 4 AC4 31 THR B 53 THR B 58 PHE B 59 LYS B 99 SITE 5 AC4 31 ASP B 103 LYS B 110 GLY B 113 ILE B 127 SITE 6 AC4 31 GLY B 128 ASN B 130 TRP B 136 SER B 180 SITE 7 AC4 31 PHE B 181 HIS B 182 ARG B 211 HOH B 401 SITE 8 AC4 31 HOH B 402 HOH B 412 HOH B 417 SITE 1 AC5 5 THR B 53 LYS B 54 SER B 133 LYS B 134 SITE 2 AC5 5 LYS B 135 SITE 1 AC6 6 CYS B 4 PRO B 31 LEU B 63 ASP B 67 SITE 2 AC6 6 GLU B 157 EDO B 307 SITE 1 AC7 6 GLU A 5 ARG A 7 EDO A 303 ARG B 7 SITE 2 AC7 6 TYR B 18 HOH B 421 SITE 1 AC8 3 ASN B 64 ALA B 65 SER B 66 SITE 1 AC9 5 ALA A 170 GLY B 163 LEU B 166 GLU B 198 SITE 2 AC9 5 HOH B 411 SITE 1 AD1 4 ARG B 2 GLU B 157 SO4 B 303 HOH B 426 CRYST1 52.890 57.080 57.030 122.14 94.73 107.85 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018907 0.006089 0.006354 0.00000 SCALE2 0.000000 0.018405 0.013360 0.00000 SCALE3 0.000000 0.000000 0.021741 0.00000