HEADER RNA 27-FEB-18 6CK4 TITLE G96A MUTANT OF THE PRPP RIBOSWITCH FROM T. MATHRANII BOUND TO PPGPP CAVEAT 6CK4 ENTRY CONTAINS IMPROPER PEPTIDE LINKAGES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRPP RIBOSWITCH; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: GB RESIDUES 657680-657796; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER MATHRANII; SOURCE 4 ORGANISM_TAXID: 583357 KEYWDS RIBOSWITCH, YKKC, PRPP, PPGPP, RNA EXPDTA X-RAY DIFFRACTION AUTHOR C.W.REISS,A.J.KNAPPENBERGER,S.A.STROBEL REVDAT 4 13-MAR-24 6CK4 1 HETSYN LINK REVDAT 3 01-JAN-20 6CK4 1 REMARK REVDAT 2 20-FEB-19 6CK4 1 REMARK LINK REVDAT 1 20-JUN-18 6CK4 0 JRNL AUTH A.J.KNAPPENBERGER,C.W.REISS,S.A.STROBEL JRNL TITL STRUCTURES OF TWO APTAMERS WITH DIFFERING LIGAND SPECIFICITY JRNL TITL 2 REVEAL RUGGEDNESS IN THE FUNCTIONAL LANDSCAPE OF RNA. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29877798 JRNL DOI 10.7554/ELIFE.36381 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 26642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5419 - 6.4307 0.92 2811 143 0.1759 0.2323 REMARK 3 2 6.4307 - 5.1087 0.96 2922 144 0.2050 0.2556 REMARK 3 3 5.1087 - 4.4642 0.93 2833 122 0.2226 0.3035 REMARK 3 4 4.4642 - 4.0566 0.89 2696 125 0.2869 0.3348 REMARK 3 5 4.0566 - 3.7662 0.93 2843 146 0.3260 0.4095 REMARK 3 6 3.7662 - 3.5443 0.94 2826 177 0.3588 0.4007 REMARK 3 7 3.5443 - 3.3669 0.95 2895 140 0.3940 0.4205 REMARK 3 8 3.3669 - 3.2205 0.94 2882 141 0.4103 0.4407 REMARK 3 9 3.2205 - 3.0965 0.89 2671 125 0.4122 0.4285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 144.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 10075 REMARK 3 ANGLE : 1.852 15597 REMARK 3 CHIRALITY : 0.137 2082 REMARK 3 PLANARITY : 0.010 412 REMARK 3 DIHEDRAL : 19.556 5005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 1 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 2 THROUGH 37 OR (RESID 38 AND REMARK 3 (NAME P OR NAME OP1 OR NAME OP2 OR NAME REMARK 3 O5 OR NAME C5 OR NAME C4 OR NAME O4 OR REMARK 3 NAME C3 OR NAME O3 OR NAME C2 OR NAME O2 REMARK 3 OR NAME C1)) OR RESID 39 THROUGH 58 OR REMARK 3 RESID 69 THROUGH 94 OR RESID 97 THROUGH REMARK 3 101 OR RESID 105 THROUGH 111)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 1 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 2 THROUGH 28 OR RESID 31 REMARK 3 THROUGH 37 OR (RESID 38 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 39 THROUGH 58 OR RESID 69 REMARK 3 THROUGH 94 OR RESID 97 THROUGH 101 OR REMARK 3 RESID 105 THROUGH 111)) REMARK 3 ATOM PAIRS NUMBER : 4438 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 1 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 2 THROUGH 37 OR (RESID 38 AND REMARK 3 (NAME P OR NAME OP1 OR NAME OP2 OR NAME REMARK 3 O5 OR NAME C5 OR NAME C4 OR NAME O4 OR REMARK 3 NAME C3 OR NAME O3 OR NAME C2 OR NAME O2 REMARK 3 OR NAME C1)) OR RESID 39 THROUGH 58 OR REMARK 3 RESID 69 THROUGH 94 OR RESID 97 THROUGH REMARK 3 101 OR RESID 105 THROUGH 111)) REMARK 3 SELECTION : (CHAIN C AND ((RESID 1 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 2 THROUGH 28 OR RESID 31 REMARK 3 THROUGH 58 OR RESID 69 THROUGH 94 OR REMARK 3 RESID 97 THROUGH 101 OR RESID 105 THROUGH REMARK 3 111)) REMARK 3 ATOM PAIRS NUMBER : 4438 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 1 AND (NAME P OR REMARK 3 NAME OP1 OR NAME OP2 OR NAME O5 OR NAME REMARK 3 C5 OR NAME C4 OR NAME O4 OR NAME C3 OR REMARK 3 NAME O3 OR NAME C2 OR NAME O2 OR NAME C1)) REMARK 3 OR RESID 2 THROUGH 37 OR (RESID 38 AND REMARK 3 (NAME P OR NAME OP1 OR NAME OP2 OR NAME REMARK 3 O5 OR NAME C5 OR NAME C4 OR NAME O4 OR REMARK 3 NAME C3 OR NAME O3 OR NAME C2 OR NAME O2 REMARK 3 OR NAME C1)) OR RESID 39 THROUGH 58 OR REMARK 3 RESID 69 THROUGH 94 OR RESID 97 THROUGH REMARK 3 101 OR RESID 105 THROUGH 111)) REMARK 3 SELECTION : (CHAIN D AND (RESID 1 THROUGH 37 OR REMARK 3 (RESID 38 AND (NAME P OR NAME OP1 OR NAME REMARK 3 OP2 OR NAME O5 OR NAME C5 OR NAME C4 OR REMARK 3 NAME O4 OR NAME C3 OR NAME O3 OR NAME C2 REMARK 3 OR NAME O2 OR NAME C1)) OR RESID 39 REMARK 3 THROUGH 58 OR RESID 67 THROUGH 69 OR REMARK 3 RESID 72 THROUGH 94 OR RESID 97 THROUGH REMARK 3 113)) REMARK 3 ATOM PAIRS NUMBER : 4438 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26741 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.097 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 1.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CRYSTALS FORMED AS THIN PLATES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL 150 UM RNA IN 10 MM MAGNESIUM REMARK 280 CHLORIDE, 10 MM POTASSIUM CHLORIDE, 10 MM HEPES-KOH, PH 7.5, 1 REMARK 280 MM PPGPP, MIXED WITH 0.8 UL 80 MM SODIUM CHLORIDE, 40 MM SODIUM REMARK 280 CACODYLATE, PH 7.0, 30% MPD, 12 MM SPERMINE, MICROBATCH, REMARK 280 TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 0 REMARK 465 U A 29 REMARK 465 U A 30 REMARK 465 U A 60 REMARK 465 A A 61 REMARK 465 U A 62 REMARK 465 U A 63 REMARK 465 U A 64 REMARK 465 U A 65 REMARK 465 U A 66 REMARK 465 A A 67 REMARK 465 U A 68 REMARK 465 C A 113 REMARK 465 G A 114 REMARK 465 U A 115 REMARK 465 A A 116 REMARK 465 U B 64 REMARK 465 U B 65 REMARK 465 U B 66 REMARK 465 A B 103 REMARK 465 U B 112 REMARK 465 C B 113 REMARK 465 G B 114 REMARK 465 U B 115 REMARK 465 A B 116 REMARK 465 U C 64 REMARK 465 U C 65 REMARK 465 U C 66 REMARK 465 G C 94A REMARK 465 U C 112 REMARK 465 C C 113 REMARK 465 G C 114 REMARK 465 U C 115 REMARK 465 A C 116 REMARK 465 U D 29 REMARK 465 U D 30 REMARK 465 U D 60 REMARK 465 A D 61 REMARK 465 U D 62 REMARK 465 U D 63 REMARK 465 U D 64 REMARK 465 U D 65 REMARK 465 U D 66 REMARK 465 G D 95 REMARK 465 U D 102 REMARK 465 A D 103 REMARK 465 G D 104 REMARK 465 C D 111 REMARK 465 U D 112 REMARK 465 A D 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A A 96 N9 C8 N7 C5 C6 N6 N1 REMARK 470 A A 96 C2 N3 C4 REMARK 470 U A 102 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U A 102 C6 REMARK 470 U B 30 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 30 C6 REMARK 470 A B 67 P OP1 OP2 O5' C5' REMARK 470 U B 102 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 102 C6 REMARK 470 U C 30 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U C 30 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U C 30 C5 C6 REMARK 470 U C 38 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U C 38 C6 REMARK 470 A C 67 P OP1 OP2 O5' C5' REMARK 470 A C 95 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A C 95 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A C 95 N1 C2 N3 C4 REMARK 470 G D 0 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G D 0 C2 N2 N3 C4 REMARK 470 U D 1 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U D 1 C6 REMARK 470 A D 59 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A D 59 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A D 59 N1 C2 N3 C4 REMARK 470 A D 96 P OP1 OP2 O5' C5' REMARK 470 U D 115 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U D 115 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U D 115 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N6 A D 5 O4 U D 106 1.47 REMARK 500 N4 C A 21 O6 G A 41 1.74 REMARK 500 N1 A D 5 N3 U D 106 1.75 REMARK 500 O2' A D 76 O2D G4P D 211 1.88 REMARK 500 O2' U A 36 OP1 U A 39 1.93 REMARK 500 N3 C A 21 N1 G A 41 1.94 REMARK 500 O2 C D 21 N2 G D 41 2.01 REMARK 500 O2' A C 76 O3D G4P C 211 2.03 REMARK 500 O2 C B 21 N2 G B 41 2.03 REMARK 500 O2 C A 21 N2 G A 41 2.05 REMARK 500 N6 A D 4 O4 U D 107 2.05 REMARK 500 N2 G D 8 O2 C D 54 2.10 REMARK 500 N3 C D 21 N1 G D 41 2.10 REMARK 500 OP2 C B 93 O HOH B 301 2.12 REMARK 500 N4 C D 21 O6 G D 41 2.14 REMARK 500 N7 G C 17 O4 MPD C 212 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 37 O3' U A 38 P -0.074 REMARK 500 G D 6 O3' U D 7 P -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 21 C5' - C4' - O4' ANGL. DEV. = -7.5 DEGREES REMARK 500 A A 69 O5' - P - OP1 ANGL. DEV. = -7.5 DEGREES REMARK 500 G B 6 O5' - P - OP1 ANGL. DEV. = -6.6 DEGREES REMARK 500 U B 19 O5' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 G B 37 C2' - C3' - O3' ANGL. DEV. = 10.1 DEGREES REMARK 500 U C 32 O5' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 G D 0 O5' - P - OP1 ANGL. DEV. = 9.6 DEGREES REMARK 500 G D 42 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 48 OP2 REMARK 620 2 C A 93 OP1 63.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 48 OP1 REMARK 620 2 C A 92 OP1 73.5 REMARK 620 3 C A 93 OP2 64.8 73.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 213 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 97 OP1 REMARK 620 2 G4P A 214 O2' 102.4 REMARK 620 3 G4P A 214 O3D 146.6 57.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 208 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P A 214 O2C REMARK 620 2 G4P A 214 O3D 58.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 48 OP2 REMARK 620 2 C B 93 OP1 62.3 REMARK 620 3 HOH B 302 O 115.8 60.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 48 OP1 REMARK 620 2 C B 92 OP1 76.0 REMARK 620 3 C B 93 OP2 66.9 74.6 REMARK 620 4 HOH B 301 O 120.8 107.7 58.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 49 O2 REMARK 620 2 C B 77 OP2 75.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 206 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P B 208 O2D REMARK 620 2 G4P B 208 O3' 82.1 REMARK 620 3 G4P B 208 O1C 72.9 48.4 REMARK 620 4 G4P B 208 O2' 51.5 55.7 87.4 REMARK 620 5 HOH B 303 O 124.6 119.3 85.3 172.6 REMARK 620 6 HOH B 305 O 132.4 130.2 153.8 113.1 74.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 207 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 304 O REMARK 620 2 HOH B 305 O 66.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 48 OP1 REMARK 620 2 C C 92 OP1 73.4 REMARK 620 3 C C 93 OP2 65.9 73.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 48 OP2 REMARK 620 2 C C 93 OP1 63.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 208 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 97 O5' REMARK 620 2 A C 98 OP2 70.9 REMARK 620 3 HOH C 305 O 128.0 61.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 209 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P C 211 O1C REMARK 620 2 HOH C 302 O 70.2 REMARK 620 3 HOH C 305 O 114.3 152.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 209 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D 47 O3' REMARK 620 2 A D 47 O2' 51.1 REMARK 620 3 G D 48 OP1 45.4 84.5 REMARK 620 4 G D 91 O3' 98.7 116.9 113.0 REMARK 620 5 C D 92 OP1 73.3 123.9 56.9 59.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 48 OP1 REMARK 620 2 C D 92 OP1 74.9 REMARK 620 3 C D 93 OP2 67.1 74.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 48 OP2 REMARK 620 2 C D 93 OP1 61.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 205 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C D 49 O2 REMARK 620 2 A D 76 O2' 74.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 204 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 302 O REMARK 620 2 HOH D 307 O 68.1 REMARK 620 3 HOH D 309 O 89.0 58.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 207 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P D 211 O2' REMARK 620 2 G4P D 211 O1C 56.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 210 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 301 O REMARK 620 2 HOH D 304 O 63.2 REMARK 620 3 HOH D 305 O 53.0 90.4 REMARK 620 4 HOH D 306 O 55.4 112.9 73.7 REMARK 620 5 HOH D 308 O 94.6 80.8 146.2 79.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P C 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P D 211 DBREF1 6CK4 A 0 116 GB CP002032.1 DBREF2 6CK4 A 296841273 657680 657796 DBREF1 6CK4 B 0 116 GB CP002032.1 DBREF2 6CK4 B 296841273 657680 657796 DBREF1 6CK4 C 0 116 GB CP002032.1 DBREF2 6CK4 C 296841273 657680 657796 DBREF1 6CK4 D 0 116 GB CP002032.1 DBREF2 6CK4 D 296841273 657680 657796 SEQADV 6CK4 A A 96 GB 296841273 G 57776 ENGINEERED MUTATION SEQADV 6CK4 A B 96 GB 296841273 G 57776 ENGINEERED MUTATION SEQADV 6CK4 A C 95 GB 296841273 G 57776 ENGINEERED MUTATION SEQADV 6CK4 A D 96 GB 296841273 G 57776 ENGINEERED MUTATION SEQRES 1 A 117 G U G A A A G U G U A C C SEQRES 2 A 117 U A G G G U U C C A G C C SEQRES 3 A 117 U A U U U G U A G G U G U SEQRES 4 A 117 U C G G A C C G A G C G G SEQRES 5 A 117 U A C A G G U A U A U U U SEQRES 6 A 117 U U A U A U A C C A C A C SEQRES 7 A 117 C U U A G G G A C A A A A SEQRES 8 A 117 G C C C G A G A G G A U A SEQRES 9 A 117 G G U U U C A C U C G U A SEQRES 1 B 117 G U G A A A G U G U A C C SEQRES 2 B 117 U A G G G U U C C A G C C SEQRES 3 B 117 U A U U U G U A G G U G U SEQRES 4 B 117 U C G G A C C G A G C G G SEQRES 5 B 117 U A C A G G U A U A U U U SEQRES 6 B 117 U U A U A U A C C A C A C SEQRES 7 B 117 C U U A G G G A C A A A A SEQRES 8 B 117 G C C C G A G A G G A U A SEQRES 9 B 117 G G U U U C A C U C G U A SEQRES 1 C 117 G U G A A A G U G U A C C SEQRES 2 C 117 U A G G G U U C C A G C C SEQRES 3 C 117 U A U U U G U A G G U G U SEQRES 4 C 117 U C G G A C C G A G C G G SEQRES 5 C 117 U A C A G G U A U A U U U SEQRES 6 C 117 U U A U A U A C C A C A C SEQRES 7 C 117 C U U A G G G A C A A A A SEQRES 8 C 117 G C C C G A G A G G A U A SEQRES 9 C 117 G G U U U C A C U C G U A SEQRES 1 D 117 G U G A A A G U G U A C C SEQRES 2 D 117 U A G G G U U C C A G C C SEQRES 3 D 117 U A U U U G U A G G U G U SEQRES 4 D 117 U C G G A C C G A G C G G SEQRES 5 D 117 U A C A G G U A U A U U U SEQRES 6 D 117 U U A U A U A C C A C A C SEQRES 7 D 117 C U U A G G G A C A A A A SEQRES 8 D 117 G C C C G A G A G G A U A SEQRES 9 D 117 G G U U U C A C U C G U A HET GTP A 201 32 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET K A 205 1 HET K A 206 1 HET K A 207 1 HET K A 208 1 HET K A 209 1 HET K A 210 1 HET K A 211 1 HET K A 212 1 HET K A 213 1 HET G4P A 214 36 HET MG B 201 1 HET MG B 202 1 HET MG B 203 1 HET K B 204 1 HET K B 205 1 HET K B 206 1 HET K B 207 1 HET G4P B 208 36 HET MG C 201 1 HET MG C 202 1 HET MG C 203 1 HET MG C 204 1 HET K C 205 1 HET K C 206 1 HET K C 207 1 HET K C 208 1 HET K C 209 1 HET K C 210 1 HET G4P C 211 36 HET MPD C 212 8 HET MG D 201 1 HET MG D 202 1 HET K D 203 1 HET K D 204 1 HET K D 205 1 HET K D 206 1 HET K D 207 1 HET K D 208 1 HET K D 209 1 HET K D 210 1 HET G4P D 211 36 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 MG 12(MG 2+) FORMUL 9 K 27(K 1+) FORMUL 18 G4P 4(C10 H17 N5 O17 P4) FORMUL 38 MPD C6 H14 O2 FORMUL 50 HOH *21(H2 O) LINK OP2 C A 45 K K A 206 1555 1555 2.61 LINK OP2 G A 48 MG MG A 202 1555 1555 2.17 LINK OP1 G A 48 MG MG A 203 1555 1555 2.24 LINK O4 U A 80 K K A 207 1555 1555 3.18 LINK OP1 C A 92 MG MG A 203 1555 1555 2.19 LINK OP1 C A 93 MG MG A 202 1555 1555 2.15 LINK OP2 C A 93 MG MG A 203 1555 1555 2.20 LINK OP1 G A 97 K K A 213 1555 1555 2.69 LINK K K A 208 O2C G4P A 214 1555 1555 3.25 LINK K K A 208 O3D G4P A 214 1555 1555 2.83 LINK K K A 212 O3A G4P A 214 1555 1555 2.61 LINK K K A 213 O2' G4P A 214 1555 1555 3.50 LINK K K A 213 O3D G4P A 214 1555 1555 3.02 LINK OP2 G B 48 MG MG B 201 1555 1555 2.16 LINK OP1 G B 48 MG MG B 202 1555 1555 2.13 LINK O2 C B 49 MG MG B 203 1555 1555 2.17 LINK OP2 C B 77 MG MG B 203 1555 1555 2.14 LINK OP1 C B 92 MG MG B 202 1555 1555 2.17 LINK OP1 C B 93 MG MG B 201 1555 1555 2.21 LINK OP2 C B 93 MG MG B 202 1555 1555 2.17 LINK MG MG B 201 O HOH B 302 1555 1555 2.16 LINK MG MG B 202 O HOH B 301 1555 1555 2.18 LINK K K B 206 O2D G4P B 208 1555 1555 3.45 LINK K K B 206 O3' G4P B 208 1555 1555 3.22 LINK K K B 206 O1C G4P B 208 1555 1555 2.47 LINK K K B 206 O2' G4P B 208 1555 1555 2.53 LINK K K B 206 O HOH B 303 1555 1555 2.81 LINK K K B 206 O HOH B 305 1555 1555 2.46 LINK K K B 207 O HOH B 304 1555 1555 3.13 LINK K K B 207 O HOH B 305 1555 1555 2.52 LINK OP2 A C 14 K K C 206 1555 1555 3.47 LINK O6 G C 16 MG MG C 204 1555 1555 2.21 LINK OP2 G C 17 MG MG C 203 1555 1555 2.16 LINK OP1 G C 48 MG MG C 201 1555 1555 2.24 LINK OP2 G C 48 MG MG C 202 1555 1555 2.18 LINK OP1 C C 92 MG MG C 201 1555 1555 2.20 LINK OP2 C C 93 MG MG C 201 1555 1555 2.17 LINK OP1 C C 93 MG MG C 202 1555 1555 2.12 LINK O5' G C 97 K K C 208 1555 1555 3.02 LINK OP2 A C 98 K K C 208 1555 1555 3.04 LINK O6 G C 104 K K C 207 1555 1555 3.04 LINK K K C 208 O HOH C 305 1555 1555 2.76 LINK K K C 209 O1C G4P C 211 1555 1555 3.46 LINK K K C 209 O HOH C 302 1555 1555 2.77 LINK K K C 209 O HOH C 305 1555 1555 2.53 LINK K K C 210 O HOH C 305 1555 1555 3.17 LINK OP2 C D 45 K K D 208 1555 1555 2.21 LINK O3' A D 47 K K D 209 1555 1555 3.33 LINK O2' A D 47 K K D 209 1555 1555 2.74 LINK OP1 G D 48 MG MG D 201 1555 1555 2.16 LINK OP2 G D 48 MG MG D 202 1555 1555 2.21 LINK OP1 G D 48 K K D 209 1555 1555 3.08 LINK O2 C D 49 K K D 205 1555 1555 2.59 LINK O2' A D 76 K K D 205 1555 1555 3.32 LINK O3' G D 91 K K D 209 1555 1555 2.76 LINK OP1 C D 92 MG MG D 201 1555 1555 2.20 LINK OP1 C D 92 K K D 209 1555 1555 2.29 LINK OP2 C D 93 MG MG D 201 1555 1555 2.15 LINK OP1 C D 93 MG MG D 202 1555 1555 2.19 LINK K K D 204 O HOH D 302 1555 1555 2.49 LINK K K D 204 O HOH D 307 1555 1555 2.73 LINK K K D 204 O HOH D 309 1555 1555 2.55 LINK K K D 207 O2' G4P D 211 1555 1555 3.09 LINK K K D 207 O1C G4P D 211 1555 1555 2.59 LINK K K D 210 O HOH D 301 1555 1555 3.09 LINK K K D 210 O HOH D 304 1555 1555 2.43 LINK K K D 210 O HOH D 305 1555 1555 2.52 LINK K K D 210 O HOH D 306 1555 1555 2.59 LINK K K D 210 O HOH D 308 1555 1555 2.18 SITE 1 AC1 3 U A 1 A A 110 C A 111 SITE 1 AC2 2 G A 48 C A 93 SITE 1 AC3 3 G A 48 C A 92 C A 93 SITE 1 AC4 2 U A 28 G A 31 SITE 1 AC5 2 C A 45 G A 46 SITE 1 AC6 2 U A 79 U A 80 SITE 1 AC7 1 G4P A 214 SITE 1 AC8 1 G A 50 SITE 1 AC9 1 G A 35 SITE 1 AD1 1 G4P A 214 SITE 1 AD2 2 G A 97 G4P A 214 SITE 1 AD3 12 A A 5 G A 6 G A 48 C A 75 SITE 2 AD3 12 A A 76 C A 77 G A 104 G A 105 SITE 3 AD3 12 U A 106 K A 208 K A 212 K A 213 SITE 1 AD4 5 A B 47 G B 48 C B 92 C B 93 SITE 2 AD4 5 HOH B 302 SITE 1 AD5 4 G B 48 C B 92 C B 93 HOH B 301 SITE 1 AD6 3 C B 49 C B 77 G4P B 208 SITE 1 AD7 1 A B 22 SITE 1 AD8 3 G4P B 208 HOH B 303 HOH B 305 SITE 1 AD9 2 A B 98 HOH B 305 SITE 1 AE1 10 G B 6 G B 48 C B 49 C B 75 SITE 2 AE1 10 A B 76 C B 77 G B 104 G B 105 SITE 3 AE1 10 MG B 203 K B 206 SITE 1 AE2 3 G C 48 C C 92 C C 93 SITE 1 AE3 4 A C 47 G C 48 C C 92 C C 93 SITE 1 AE4 1 G C 17 SITE 1 AE5 2 G C 16 K C 206 SITE 1 AE6 1 G C 23 SITE 1 AE7 2 A C 14 MG C 204 SITE 1 AE8 1 G C 104 SITE 1 AE9 3 G C 97 A C 98 HOH C 305 SITE 1 AF1 3 G4P C 211 HOH C 302 HOH C 305 SITE 1 AF2 1 A C 98 SITE 1 AF3 9 G C 6 G C 48 C C 75 A C 76 SITE 2 AF3 9 C C 77 G C 104 G C 105 K C 209 SITE 3 AF3 9 HOH C 302 SITE 1 AF4 4 G C 17 U C 18 G C 41 A C 43 SITE 1 AF5 4 G D 48 C D 92 C D 93 K D 209 SITE 1 AF6 2 G D 48 C D 93 SITE 1 AF7 4 A D 22 HOH D 302 HOH D 307 HOH D 309 SITE 1 AF8 3 C D 49 A D 76 K D 206 SITE 1 AF9 1 K D 205 SITE 1 AG1 1 G4P D 211 SITE 1 AG2 2 C D 45 G D 46 SITE 1 AG3 5 A D 47 G D 48 G D 91 C D 92 SITE 2 AG3 5 MG D 201 SITE 1 AG4 5 HOH D 301 HOH D 304 HOH D 305 HOH D 306 SITE 2 AG4 5 HOH D 308 SITE 1 AG5 8 G D 6 G D 48 C D 75 A D 76 SITE 2 AG5 8 C D 77 G D 105 K D 207 HOH D 303 CRYST1 53.252 62.147 125.909 91.18 89.61 101.94 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018779 0.003971 -0.000050 0.00000 SCALE2 0.000000 0.016447 0.000323 0.00000 SCALE3 0.000000 0.000000 0.007944 0.00000