HEADER DNA BINDING PROTEIN/TRANSFERASE 28-FEB-18 6CKO TITLE CRYSTAL STRUCTURE OF AN AF10 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AF-10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 10 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: HISTONE H3-K79 METHYLTRANSFERASE; COMPND 10 EC: 2.1.1.43; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT10, AF10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 12 ORGANISM_COMMON: ZEBRAFISH; SOURCE 13 ORGANISM_TAXID: 7955; SOURCE 14 GENE: DOT1L; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, DNA BINDING KEYWDS 2 PROTEIN-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 18-APR-18 6CKO 1 JRNL REVDAT 1 21-MAR-18 6CKO 0 JRNL AUTH H.ZHANG,B.ZHOU,S.QIN,J.XU,R.HARDING,W.TEMPEL,V.NAYAK,Y.LI, JRNL AUTH 2 P.LOPPNAU,Y.DOU,J.MIN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE DOT1L-AF10 COMPLEX JRNL TITL 2 REVEALS MECHANISTIC INSIGHTS INTO MLL-AF10-ASSOCIATED JRNL TITL 3 LEUKEMOGENESIS. JRNL REF GENES DEV. V. 32 341 2018 JRNL REFN ISSN 1549-5477 JRNL PMID 29563185 JRNL DOI 10.1101/GAD.311639.118 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1361 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1839 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1651 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2455 ; 1.467 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3832 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 4.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;32.675 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;14.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2024 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 315 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 930 ; 1.290 ; 2.450 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 929 ; 1.284 ; 2.446 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 2.030 ; 3.653 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 730 A 750 REMARK 3 ORIGIN FOR THE GROUP (A): 26.293 30.235 47.230 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.2855 REMARK 3 T33: 0.2545 T12: -0.0333 REMARK 3 T13: 0.0679 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 7.5767 L22: 10.1013 REMARK 3 L33: 4.8247 L12: 5.0587 REMARK 3 L13: -0.4051 L23: -3.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.1136 S13: -0.0751 REMARK 3 S21: -0.4352 S22: -0.0711 S23: 0.0866 REMARK 3 S31: 0.3659 S32: -0.1057 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 730 B 750 REMARK 3 ORIGIN FOR THE GROUP (A): 86.390 36.511 81.441 REMARK 3 T TENSOR REMARK 3 T11: 0.6897 T22: 0.3395 REMARK 3 T33: 0.3502 T12: -0.0664 REMARK 3 T13: -0.0151 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 13.2354 L22: 7.6911 REMARK 3 L33: 1.2424 L12: -5.4575 REMARK 3 L13: 2.0654 L23: 0.9354 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: -0.5457 S13: -0.2504 REMARK 3 S21: 0.3205 S22: 0.1127 S23: -0.1529 REMARK 3 S31: -0.2964 S32: -0.0419 S33: -0.2343 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 751 A 795 REMARK 3 ORIGIN FOR THE GROUP (A): 36.492 46.532 55.952 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.0922 REMARK 3 T33: 0.0336 T12: -0.0195 REMARK 3 T13: 0.0256 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 11.4572 L22: 5.9205 REMARK 3 L33: 0.9022 L12: 7.1852 REMARK 3 L13: 1.3398 L23: 1.1184 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.1761 S13: -0.3260 REMARK 3 S21: 0.0358 S22: -0.0479 S23: -0.0450 REMARK 3 S31: 0.1201 S32: -0.1212 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 751 B 795 REMARK 3 ORIGIN FOR THE GROUP (A): 78.348 43.312 63.303 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.2369 REMARK 3 T33: 0.1875 T12: 0.0643 REMARK 3 T13: -0.0804 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 9.4420 L22: 5.6621 REMARK 3 L33: 5.6471 L12: -7.0343 REMARK 3 L13: 7.2801 L23: -5.3748 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0453 S13: 0.0705 REMARK 3 S21: 0.2056 S22: -0.0112 S23: -0.3134 REMARK 3 S31: 0.0280 S32: 0.0316 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 559 C 608 REMARK 3 ORIGIN FOR THE GROUP (A): 40.560 54.650 60.914 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.0886 REMARK 3 T33: 0.0223 T12: -0.0095 REMARK 3 T13: 0.0234 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 4.9904 L22: 5.7116 REMARK 3 L33: 1.1895 L12: 4.1805 REMARK 3 L13: -0.3775 L23: -0.6905 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.1621 S13: -0.1355 REMARK 3 S21: 0.0671 S22: 0.0136 S23: -0.1655 REMARK 3 S31: -0.0032 S32: -0.0312 S33: 0.0347 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 559 D 608 REMARK 3 ORIGIN FOR THE GROUP (A): 77.573 46.132 55.648 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.1807 REMARK 3 T33: 0.1282 T12: 0.0242 REMARK 3 T13: -0.0406 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.8826 L22: 9.8888 REMARK 3 L33: 2.2183 L12: -5.4797 REMARK 3 L13: 2.4306 L23: -4.4126 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.0094 S13: 0.2240 REMARK 3 S21: 0.2319 S22: -0.0905 S23: -0.3960 REMARK 3 S31: -0.0724 S32: 0.0981 S33: 0.1453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SAD PHASING WITH SHELXD/E. REMARK 4 REMARK 4 6CKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.70200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.70200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.85050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.27900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.85050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.27900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.70200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.85050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.27900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.70200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.85050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.27900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -493.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.55800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 130.80800 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -50.85050 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 61.27900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -50.85050 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 61.27900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.80800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 719 REMARK 465 SER A 720 REMARK 465 SER A 721 REMARK 465 LEU A 722 REMARK 465 GLU A 723 REMARK 465 ASN A 724 REMARK 465 LEU A 725 REMARK 465 PRO A 726 REMARK 465 PRO A 727 REMARK 465 VAL A 728 REMARK 465 ALA A 729 REMARK 465 GLY B 719 REMARK 465 SER B 720 REMARK 465 SER B 721 REMARK 465 LEU B 722 REMARK 465 GLU B 723 REMARK 465 ASN B 724 REMARK 465 LEU B 725 REMARK 465 PRO B 726 REMARK 465 PRO B 727 REMARK 465 VAL B 728 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 730 N CB REMARK 470 ILE A 732 CG1 CG2 CD1 REMARK 470 GLU A 733 CG CD OE1 OE2 REMARK 470 GLN A 734 CG CD OE1 NE2 REMARK 470 ARG A 738 CG CD NE CZ NH1 NH2 REMARK 470 SER A 741 OG REMARK 470 GLN A 745 CG CD OE1 NE2 REMARK 470 LEU A 748 CD1 CD2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 ASP A 755 OD1 OD2 REMARK 470 ILE A 756 CD1 REMARK 470 LEU A 757 CD1 CD2 REMARK 470 LYS A 761 CE NZ REMARK 470 SER A 762 OG REMARK 470 LYS A 778 NZ REMARK 470 LEU A 789 CG CD1 CD2 REMARK 470 ALA B 729 N CB REMARK 470 ILE B 732 CD1 REMARK 470 GLN B 734 CD OE1 NE2 REMARK 470 GLN B 744 CD OE1 NE2 REMARK 470 GLN B 745 CD OE1 NE2 REMARK 470 GLN B 750 CD OE1 NE2 REMARK 470 SER B 754 OG REMARK 470 ILE B 756 CD1 REMARK 470 LYS B 761 CD CE NZ REMARK 470 GLU B 769 OE1 OE2 REMARK 470 ARG B 771 CD NE CZ NH1 NH2 REMARK 470 ARG B 772 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 778 CE NZ REMARK 470 LYS B 783 NZ REMARK 470 GLU B 785 CG CD OE1 OE2 REMARK 470 GLN C 568 OE1 NE2 REMARK 470 LYS C 569 CE NZ REMARK 470 GLU C 580 CD OE1 OE2 REMARK 470 LYS C 583 CE NZ REMARK 470 GLN C 597 CD OE1 NE2 REMARK 470 LYS C 601 CD CE NZ REMARK 470 ARG C 603 NH1 NH2 REMARK 470 GLU C 606 CD OE1 OE2 REMARK 470 GLN D 577 CG CD OE1 NE2 REMARK 470 GLU D 580 CG CD OE1 OE2 REMARK 470 LYS D 583 CD CE NZ REMARK 470 GLN D 597 OE1 NE2 REMARK 470 LEU D 598 CD1 CD2 REMARK 470 LYS D 601 CD CE NZ REMARK 470 LYS D 608 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 772 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 737 OE1 REMARK 620 2 GLU A 737 OE2 61.8 REMARK 620 3 HIS A 764 NE2 107.9 86.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 774 OE1 REMARK 620 2 GLU A 774 OE2 55.2 REMARK 620 3 HIS C 574 NE2 142.5 98.8 REMARK 620 4 ASP D 563 OD2 86.2 124.7 130.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 737 OE1 REMARK 620 2 GLU B 737 OE2 56.1 REMARK 620 3 HIS B 764 NE2 130.8 91.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 774 OE2 REMARK 620 2 HIS D 574 NE2 101.0 REMARK 620 3 ASP C 563 OD2 57.5 126.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 587 NE2 REMARK 620 2 GLU C 591 OE2 113.3 REMARK 620 3 ASP C 588 OD2 56.4 103.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 587 NE2 REMARK 620 2 GLU A 769 OE2 92.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 2001 DBREF 6CKO A 720 795 UNP P55197 AF10_HUMAN 704 779 DBREF 6CKO B 720 795 UNP P55197 AF10_HUMAN 704 779 DBREF 6CKO C 562 608 UNP F1Q4W7 F1Q4W7_DANRE 554 600 DBREF 6CKO D 562 608 UNP F1Q4W7 F1Q4W7_DANRE 554 600 SEQADV 6CKO GLY A 719 UNP P55197 EXPRESSION TAG SEQADV 6CKO GLY B 719 UNP P55197 EXPRESSION TAG SEQADV 6CKO GLY C 559 UNP F1Q4W7 EXPRESSION TAG SEQADV 6CKO THR C 560 UNP F1Q4W7 EXPRESSION TAG SEQADV 6CKO TYR C 561 UNP F1Q4W7 EXPRESSION TAG SEQADV 6CKO GLY D 559 UNP F1Q4W7 EXPRESSION TAG SEQADV 6CKO THR D 560 UNP F1Q4W7 EXPRESSION TAG SEQADV 6CKO TYR D 561 UNP F1Q4W7 EXPRESSION TAG SEQRES 1 A 77 GLY SER SER LEU GLU ASN LEU PRO PRO VAL ALA ALA SER SEQRES 2 A 77 ILE GLU GLN LEU LEU GLU ARG GLN TRP SER GLU GLY GLN SEQRES 3 A 77 GLN PHE LEU LEU GLU GLN GLY THR PRO SER ASP ILE LEU SEQRES 4 A 77 GLY MET LEU LYS SER LEU HIS GLN LEU GLN VAL GLU ASN SEQRES 5 A 77 ARG ARG LEU GLU GLU GLN ILE LYS ASN LEU THR ALA LYS SEQRES 6 A 77 LYS GLU ARG LEU GLN LEU LEU ASN ALA GLN LEU SER SEQRES 1 B 77 GLY SER SER LEU GLU ASN LEU PRO PRO VAL ALA ALA SER SEQRES 2 B 77 ILE GLU GLN LEU LEU GLU ARG GLN TRP SER GLU GLY GLN SEQRES 3 B 77 GLN PHE LEU LEU GLU GLN GLY THR PRO SER ASP ILE LEU SEQRES 4 B 77 GLY MET LEU LYS SER LEU HIS GLN LEU GLN VAL GLU ASN SEQRES 5 B 77 ARG ARG LEU GLU GLU GLN ILE LYS ASN LEU THR ALA LYS SEQRES 6 B 77 LYS GLU ARG LEU GLN LEU LEU ASN ALA GLN LEU SER SEQRES 1 C 50 GLY THR TYR GLU ASP LEU VAL GLN ALA GLN LYS GLU ILE SEQRES 2 C 50 THR ALA HIS ASN MET GLN LEU ARG GLU GLN THR LYS GLN SEQRES 3 C 50 LEU GLU HIS ASP MET ALA GLU LEU ARG ASP GLN SER GLN SEQRES 4 C 50 LEU LEU LEU LYS ALA ARG CYS GLU GLU LEU LYS SEQRES 1 D 50 GLY THR TYR GLU ASP LEU VAL GLN ALA GLN LYS GLU ILE SEQRES 2 D 50 THR ALA HIS ASN MET GLN LEU ARG GLU GLN THR LYS GLN SEQRES 3 D 50 LEU GLU HIS ASP MET ALA GLU LEU ARG ASP GLN SER GLN SEQRES 4 D 50 LEU LEU LEU LYS ALA ARG CYS GLU GLU LEU LYS HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HET UNX A 804 1 HET UNX A 805 1 HET UNX A 806 1 HET UNX A 807 1 HET UNX A 808 1 HET UNX A 809 1 HET UNX A 810 1 HET UNX A 811 1 HET ZN B 801 1 HET ZN B 802 1 HET ZN B 803 1 HET UNX B 804 1 HET UNX B 805 1 HET UNX B 806 1 HET UNX B 807 1 HET ZN C2001 1 HET UNX C2002 1 HET UNX C2003 1 HET UNX C2004 1 HET UNX C2005 1 HET UNX C2006 1 HET UNX C2007 1 HET UNX C2008 1 HET ZN D2001 1 HET UNX D2002 1 HET UNX D2003 1 HET UNX D2004 1 HET UNX D2005 1 HET UNX D2006 1 HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 5 ZN 8(ZN 2+) FORMUL 8 UNX 24(X) FORMUL 37 HOH *27(H2 O) HELIX 1 AA1 SER A 731 GLN A 750 1 20 HELIX 2 AA2 PRO A 753 SER A 795 1 43 HELIX 3 AA3 SER B 731 GLY B 751 1 21 HELIX 4 AA4 PRO B 753 SER B 795 1 43 HELIX 5 AA5 THR C 560 LYS C 608 1 49 HELIX 6 AA6 THR D 560 LYS D 608 1 49 SSBOND 1 CYS C 604 CYS D 604 1555 1555 2.03 LINK OE1 GLU A 737 ZN ZN A 802 1555 1555 2.05 LINK OE2 GLU A 737 ZN ZN A 802 1555 1555 2.05 LINK NE2 HIS A 764 ZN ZN A 802 1555 1555 1.96 LINK OE1 GLU A 774 ZN ZN A 801 1555 1555 2.68 LINK OE2 GLU A 774 ZN ZN A 801 1555 1555 2.01 LINK OE1 GLU A 775 ZN ZN A 803 1555 1555 2.06 LINK OE1 GLU B 733 ZN ZN B 803 1555 1555 2.04 LINK OE1 GLU B 737 ZN ZN B 802 1555 1555 1.99 LINK OE2 GLU B 737 ZN ZN B 802 1555 1555 2.51 LINK NE2 HIS B 764 ZN ZN B 802 1555 1555 1.93 LINK OE2 GLU B 774 ZN ZN B 801 1555 1555 2.02 LINK NE2 HIS C 574 ZN ZN A 801 1555 1555 2.07 LINK NE2 HIS C 587 ZN ZN C2001 1555 1555 2.00 LINK OE2 GLU C 591 ZN ZN C2001 1555 1555 1.94 LINK NE2 HIS D 574 ZN ZN B 801 1555 1555 2.02 LINK NE2 HIS D 587 ZN ZN D2001 1555 1555 2.02 LINK OE2 GLU A 769 ZN ZN D2001 1555 3656 1.97 LINK OD2 ASP C 563 ZN ZN B 801 1555 8457 1.76 LINK OD2 ASP C 588 ZN ZN C2001 1555 4567 1.94 LINK OD2 ASP D 563 ZN ZN A 801 1555 8557 1.85 SITE 1 AC1 3 GLU A 774 HIS C 574 ASP D 563 SITE 1 AC2 2 GLU A 737 HIS A 764 SITE 1 AC3 1 GLU A 775 SITE 1 AC4 3 GLU B 774 ASP C 563 HIS D 574 SITE 1 AC5 2 GLU B 737 HIS B 764 SITE 1 AC6 1 GLU B 733 SITE 1 AC7 3 HIS C 587 ASP C 588 GLU C 591 SITE 1 AC8 2 GLU A 769 HIS D 587 CRYST1 101.701 122.558 65.404 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015290 0.00000