HEADER TRANSFERASE 28-FEB-18 6CKT TITLE CRYSTAL STRUCTURE OF 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- TITLE 2 SUCCINYLTRANSFERASE FROM LEGIONELLA PNEUMOPHILA PHILADELPHIA 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE, COMPND 6 TETRAHYDROPICOLINATE SUCCINYLASE; COMPND 7 EC: 2.3.1.117; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 ATCC: 33152; SOURCE 7 GENE: DAPD, LPG0888; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: LEPNA.00002.A.B1 KEYWDS SSGCID, TRANSFERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 6CKT 1 REMARK REVDAT 2 15-JAN-20 6CKT 1 REMARK REVDAT 1 21-MAR-18 6CKT 0 JRNL AUTH J.ABENDROTH,M.ALLAIRE,S.J.MAYCLIN,D.D.LORIMER,P.S.HORANYI, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF JRNL TITL 2 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE JRNL TITL 3 N-SUCCINYLTRANSFERASE FROM LEGIONELLA PNEUMOPHILA JRNL TITL 4 PHILADELPHIA 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3026) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4365 - 4.3363 0.99 1664 145 0.1340 0.1503 REMARK 3 2 4.3363 - 3.4426 1.00 1650 147 0.1390 0.1760 REMARK 3 3 3.4426 - 3.0077 0.99 1633 158 0.1654 0.1736 REMARK 3 4 3.0077 - 2.7328 1.00 1686 134 0.1756 0.2277 REMARK 3 5 2.7328 - 2.5370 1.00 1621 150 0.1894 0.2126 REMARK 3 6 2.5370 - 2.3874 1.00 1700 148 0.1729 0.1998 REMARK 3 7 2.3874 - 2.2679 1.00 1655 135 0.1595 0.2381 REMARK 3 8 2.2679 - 2.1692 1.00 1683 134 0.1719 0.2284 REMARK 3 9 2.1692 - 2.0857 1.00 1706 111 0.1640 0.2102 REMARK 3 10 2.0857 - 2.0137 1.00 1677 150 0.1669 0.2162 REMARK 3 11 2.0137 - 1.9507 1.00 1682 134 0.1802 0.2047 REMARK 3 12 1.9507 - 1.8950 1.00 1649 122 0.1966 0.2647 REMARK 3 13 1.8950 - 1.8451 1.00 1687 128 0.2283 0.2916 REMARK 3 14 1.8451 - 1.8001 1.00 1668 150 0.2559 0.3024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0432 -23.0134 -36.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.7661 T22: 1.0638 REMARK 3 T33: 1.0597 T12: 0.2411 REMARK 3 T13: -0.0638 T23: -0.2411 REMARK 3 L TENSOR REMARK 3 L11: 5.5339 L22: 4.4907 REMARK 3 L33: 1.6610 L12: 4.8390 REMARK 3 L13: -2.6873 L23: -2.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.3954 S12: -0.3539 S13: -0.9277 REMARK 3 S21: -0.9114 S22: 0.2911 S23: -1.3051 REMARK 3 S31: 0.0337 S32: 0.8509 S33: 0.0746 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4572 -16.2782 -11.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 1.1383 REMARK 3 T33: 0.8266 T12: -0.2373 REMARK 3 T13: 0.1348 T23: -0.1099 REMARK 3 L TENSOR REMARK 3 L11: 5.8978 L22: 0.1730 REMARK 3 L33: 5.0713 L12: -0.1617 REMARK 3 L13: -1.3339 L23: 0.6812 REMARK 3 S TENSOR REMARK 3 S11: -0.2346 S12: -0.9258 S13: -0.2716 REMARK 3 S21: 0.3968 S22: -0.2077 S23: 0.7428 REMARK 3 S31: 0.6162 S32: -0.7469 S33: 0.2473 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6436 -8.3003 -6.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.4534 T22: 0.8484 REMARK 3 T33: 0.8135 T12: -0.0279 REMARK 3 T13: 0.1320 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 6.7007 L22: 0.2879 REMARK 3 L33: 1.0791 L12: -1.0647 REMARK 3 L13: 2.3709 L23: -0.2083 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -1.2751 S13: 0.4252 REMARK 3 S21: 0.5965 S22: -0.1940 S23: 0.7449 REMARK 3 S31: -0.1008 S32: -1.1499 S33: 0.2700 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7888 -11.6007 -12.3287 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2397 REMARK 3 T33: 0.3205 T12: -0.0536 REMARK 3 T13: 0.0042 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.9369 L22: 2.2998 REMARK 3 L33: 1.9327 L12: 0.2784 REMARK 3 L13: 0.5130 L23: 0.4121 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: -0.0601 S13: -0.5113 REMARK 3 S21: 0.1222 S22: -0.0711 S23: 0.3084 REMARK 3 S31: 0.3487 S32: -0.3138 S33: -0.0238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3632 -11.0712 -35.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.4875 T22: 0.5004 REMARK 3 T33: 0.3225 T12: -0.0139 REMARK 3 T13: -0.0791 T23: -0.1622 REMARK 3 L TENSOR REMARK 3 L11: 1.7924 L22: 1.6915 REMARK 3 L33: 3.6077 L12: 0.2060 REMARK 3 L13: -0.4123 L23: -0.7933 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: 0.7137 S13: -0.4307 REMARK 3 S21: -0.6652 S22: 0.0322 S23: 0.2462 REMARK 3 S31: 0.2068 S32: -0.0988 S33: -0.1011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.428 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.028 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.13 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 3TK8 AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZATION SCREEN BASED ON REMARK 280 RIGAKUREAGENTS JCSG+ SCREEN B4 AND MICROLYTIC MCSG1 SCREEN B4: REMARK 280 11% PEG 8000, 100MM HEPES FREE ACID/NAOH PH 7.0: REMARK 280 LEPNA.00002.A.B1.PS38381 AT 20MG/ML: CRYO: 25% EG: TRAY 298088D1: REMARK 280 PUCK FVT5-8, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.86500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.36692 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.66000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.86500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.36692 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.66000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.86500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.36692 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.66000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.73384 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.32000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.73384 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.32000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.73384 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ALA A 272 REMARK 465 ASN A 273 REMARK 465 GLN A 274 REMARK 465 ASP A 275 REMARK 465 ASP A 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ILE A 218 CG1 CG2 CD1 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 HIS A 241 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 90 O HOH A 401 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 35.20 -99.57 REMARK 500 HIS A 108 56.04 -118.47 REMARK 500 ARG A 187 -0.09 71.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.00002.A RELATED DB: TARGETTRACK DBREF 6CKT A 1 276 UNP Q5ZX45 DAPD_LEGPH 1 276 SEQADV 6CKT MET A -7 UNP Q5ZX45 INITIATING METHIONINE SEQADV 6CKT ALA A -6 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A -5 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A -4 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A -3 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A -2 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A -1 UNP Q5ZX45 EXPRESSION TAG SEQADV 6CKT HIS A 0 UNP Q5ZX45 EXPRESSION TAG SEQRES 1 A 284 MET ALA HIS HIS HIS HIS HIS HIS MET ASN SER LEU GLN SEQRES 2 A 284 ASP LEU ILE GLU GLN ALA PHE GLU ASN ARG GLN ASN LEU SEQRES 3 A 284 SER LEU ASP THR ALA SER SER ASP LEU ILE ASN ALA ILE SEQRES 4 A 284 ASN GLU VAL LEU SER GLY LEU ASP ASN GLY GLN PHE ARG SEQRES 5 A 284 VAL ALA GLU LYS ILE ASN GLY GLU TRP THR VAL HIS GLN SEQRES 6 A 284 TRP LEU LYS LYS ALA VAL LEU LEU SER PHE LYS LEU PHE SEQRES 7 A 284 PRO ASN GLN ILE ILE ASP ALA GLY PHE CYS LYS PHE TYR SEQRES 8 A 284 ASP LYS ILE PRO LEU LYS TYR THR ASP CYS SER ASN GLU SEQRES 9 A 284 GLN PHE GLN GLN SER GLY VAL ARG VAL VAL PRO HIS ALA SEQRES 10 A 284 MET VAL ARG ARG GLY ALA TYR ILE ALA LYS ASN THR VAL SEQRES 11 A 284 LEU MET PRO SER TYR VAL ASN ILE GLY ALA TYR ILE ASP SEQRES 12 A 284 GLU GLY VAL MET VAL ASP THR TRP ALA THR VAL GLY SER SEQRES 13 A 284 CYS ALA GLN ILE GLY LYS ASN VAL HIS ILE SER GLY GLY SEQRES 14 A 284 ALA GLY ILE GLY GLY VAL LEU GLU PRO LEU GLN ALA ASN SEQRES 15 A 284 PRO THR ILE ILE GLU ASP ASN CYS PHE ILE GLY ALA ARG SEQRES 16 A 284 SER GLU ILE VAL GLU GLY VAL ILE VAL GLU LYS ASN SER SEQRES 17 A 284 VAL ILE SER MET GLY VAL PHE LEU GLY GLN SER THR LYS SEQRES 18 A 284 ILE TYR ASN ARG ILE THR GLY GLU VAL SER TYR GLY ARG SEQRES 19 A 284 ILE PRO ALA GLY SER VAL VAL VAL ALA GLY ASN LEU PRO SEQRES 20 A 284 SER HIS ASP GLY SER HIS SER LEU TYR CYS ALA VAL ILE SEQRES 21 A 284 VAL LYS GLN VAL ASP GLU LYS THR ARG ALA LYS VAL SER SEQRES 22 A 284 ILE ASN ASP LEU LEU ARG ALA ASN GLN ASP ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 HIS A -1 ASN A 14 1 16 HELIX 2 AA2 ARG A 15 LEU A 18 5 4 HELIX 3 AA3 SER A 24 ASN A 40 1 17 HELIX 4 AA4 HIS A 56 PHE A 70 1 15 HELIX 5 AA5 SER A 94 GLY A 102 1 9 HELIX 6 AA6 ASP A 257 VAL A 264 1 8 HELIX 7 AA7 SER A 265 ARG A 271 1 7 SHEET 1 AA1 2 ALA A 46 ILE A 49 0 SHEET 2 AA1 2 GLU A 52 VAL A 55 -1 O THR A 54 N GLU A 47 SHEET 1 AA2 2 GLN A 73 ASP A 76 0 SHEET 2 AA2 2 LYS A 81 ASP A 84 -1 O PHE A 82 N ILE A 75 SHEET 1 AA310 ARG A 104 VAL A 105 0 SHEET 2 AA310 VAL A 122 LEU A 123 1 O LEU A 123 N ARG A 104 SHEET 3 AA310 MET A 139 VAL A 140 1 O VAL A 140 N VAL A 122 SHEET 4 AA310 HIS A 157 ILE A 158 1 O ILE A 158 N MET A 139 SHEET 5 AA310 PHE A 183 ILE A 184 1 O ILE A 184 N HIS A 157 SHEET 6 AA310 VAL A 201 ILE A 202 1 O ILE A 202 N PHE A 183 SHEET 7 AA310 SER A 231 PRO A 239 1 O VAL A 233 N VAL A 201 SHEET 8 AA310 SER A 246 GLN A 255 -1 O LYS A 254 N VAL A 232 SHEET 9 AA310 ILE A 214 ASN A 216 1 N TYR A 215 O ALA A 250 SHEET 10 AA310 VAL A 222 SER A 223 -1 O SER A 223 N ILE A 214 SHEET 1 AA4 6 MET A 110 VAL A 111 0 SHEET 2 AA4 6 TYR A 127 VAL A 128 1 O VAL A 128 N MET A 110 SHEET 3 AA4 6 THR A 145 VAL A 146 1 O VAL A 146 N TYR A 127 SHEET 4 AA4 6 GLY A 163 ILE A 164 1 O ILE A 164 N THR A 145 SHEET 5 AA4 6 GLU A 189 ILE A 190 1 O ILE A 190 N GLY A 163 SHEET 6 AA4 6 PHE A 207 LEU A 208 1 O LEU A 208 N GLU A 189 SHEET 1 AA5 6 TYR A 116 ILE A 117 0 SHEET 2 AA5 6 TYR A 133 ILE A 134 1 O ILE A 134 N TYR A 116 SHEET 3 AA5 6 GLN A 151 ILE A 152 1 O ILE A 152 N TYR A 133 SHEET 4 AA5 6 ILE A 177 ILE A 178 1 O ILE A 178 N GLN A 151 SHEET 5 AA5 6 ILE A 195 VAL A 196 1 O VAL A 196 N ILE A 177 SHEET 6 AA5 6 ARG A 226 ILE A 227 1 O ILE A 227 N ILE A 195 CISPEP 1 PRO A 107 HIS A 108 0 2.52 CISPEP 2 GLU A 169 PRO A 170 0 -1.12 SITE 1 AC1 8 CYS A 80 LYS A 81 LEU A 88 LYS A 89 SITE 2 AC1 8 TYR A 90 ALA A 109 MET A 110 VAL A 111 SITE 1 AC2 6 PHE A 67 ARG A 112 MET A 124 ASN A 129 SITE 2 AC2 6 SER A 148 HOH A 403 SITE 1 AC3 3 CYS A 93 SER A 101 HOH A 457 CRYST1 101.730 101.730 70.980 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009830 0.005675 0.000000 0.00000 SCALE2 0.000000 0.011351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014088 0.00000