HEADER    SIGNALING PROTEIN                       28-FEB-18   6CKU              
TITLE     SOLUTION STRUCTURE OF THE ZEBRAFISH GRANULIN AAE                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GRANULIN-AAE;                                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 793-848;                                          
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: DANIO RERIO;                                    
SOURCE   3 ORGANISM_COMMON: ZEBRAFISH;                                          
SOURCE   4 ORGANISM_TAXID: 7955;                                                
SOURCE   5 GENE: GRNA;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    GRANULIN/EPITHELIN MODULE, BETA-HAIRPIN STACK, PROGRANULINS,          
KEYWDS   2 SIGNALING PROTEIN                                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    16                                                                    
AUTHOR    P.WANG,F.NI                                                           
REVDAT   5   13-NOV-24 6CKU    1       REMARK                                   
REVDAT   4   14-JUN-23 6CKU    1       REMARK                                   
REVDAT   3   08-JAN-20 6CKU    1       REMARK                                   
REVDAT   2   03-OCT-18 6CKU    1       JRNL                                     
REVDAT   1   13-JUN-18 6CKU    0                                                
JRNL        AUTH   P.WANG,B.CHITRAMUTHU,A.BATEMAN,H.P.J.BENNETT,P.XU,F.NI       
JRNL        TITL   STRUCTURE DISSECTION OF ZEBRAFISH PROGRANULINS IDENTIFIES A  
JRNL        TITL 2 WELL-FOLDED GRANULIN/EPITHELIN MODULE PROTEIN WITH PRO-CELL  
JRNL        TITL 3 SURVIVAL ACTIVITIES.                                         
JRNL        REF    PROTEIN SCI.                  V.  27  1476 2018              
JRNL        REFN                   ESSN 1469-896X                               
JRNL        PMID   29732682                                                     
JRNL        DOI    10.1002/PRO.3441                                             
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.0, ARIA                                        
REMARK   3   AUTHORS     : BRUNGER ET AL. (CNS), NILGES ET AL. (ARIA)           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6CKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-18.                  
REMARK 100 THE DEPOSITION ID IS D_1000232731.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.8                                
REMARK 210  IONIC STRENGTH                 : 150                                
REMARK 210  PRESSURE                       : 760 MMHG                           
REMARK 210  SAMPLE CONTENTS                : 0.5 MM ZEBRAFISH GRANULIN AAE,     
REMARK 210                                   150 MM SODIUM CHLORIDE AND 0.2MM   
REMARK 210                                   EDTA PH 6.8 90%, H2O/10% D2O;      
REMARK 210                                   0.5 MM [U-15N] ZEBRAFISH           
REMARK 210                                   GRANULIN AAE, 10MM SODIUM          
REMARK 210                                   PHOSPHATE, 150 MM SODIUM           
REMARK 210                                   CHLORIDE AND 0.2MM EDTA PH 6.8,    
REMARK 210                                   90% H2O/10% D2O                    
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-1H TOCSY; 2D 1H-1H COSY;     
REMARK 210                                   2D 1H-1H NOESY; 2D 1H-15N HSQC     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW, CNS 1.0, ARIA             
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 16                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 16                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A  29      123.15     64.12                                   
REMARK 500  1 MET A  38      -93.90   -132.99                                   
REMARK 500  1 GLN A  39       82.60   -154.51                                   
REMARK 500  2 CYS A   4      -82.43    -54.24                                   
REMARK 500  2 GLN A  21      -75.25    -68.14                                   
REMARK 500  2 PRO A  30      -72.36    -68.79                                   
REMARK 500  2 LYS A  31       26.82    -75.19                                   
REMARK 500  2 CYS A  35      107.75    -53.00                                   
REMARK 500  2 MET A  38     -102.85   -122.81                                   
REMARK 500  2 GLN A  39       80.26   -156.93                                   
REMARK 500  2 HIS A  40     -172.63   -171.85                                   
REMARK 500  2 PRO A  43      150.94    -44.43                                   
REMARK 500  3 GLN A   3       94.82    -58.09                                   
REMARK 500  3 SER A  20     -119.63   -148.26                                   
REMARK 500  3 GLN A  21      -26.46   -153.32                                   
REMARK 500  3 PRO A  30     -122.42    -67.93                                   
REMARK 500  3 MET A  38      -98.33   -128.90                                   
REMARK 500  3 GLN A  39       82.31   -155.04                                   
REMARK 500  3 ALA A  44      105.59    -44.72                                   
REMARK 500  4 CYS A   4      -76.34    -61.98                                   
REMARK 500  4 SER A  20     -106.21   -150.40                                   
REMARK 500  4 GLN A  21      -22.36   -141.75                                   
REMARK 500  4 PRO A  28       35.18    -77.75                                   
REMARK 500  4 LYS A  31       36.46    -86.75                                   
REMARK 500  4 CYS A  34       99.32    -67.87                                   
REMARK 500  4 CYS A  35      107.28    -51.19                                   
REMARK 500  4 MET A  38      -98.30   -130.62                                   
REMARK 500  4 GLN A  39       83.06   -155.51                                   
REMARK 500  5 GLN A   3      105.15    -24.21                                   
REMARK 500  5 SER A  20       -4.50   -151.03                                   
REMARK 500  5 GLN A  21      -34.24     74.55                                   
REMARK 500  5 PRO A  28       80.94    -65.09                                   
REMARK 500  5 SER A  29      127.56   -178.96                                   
REMARK 500  5 PRO A  30      -96.63    -45.51                                   
REMARK 500  5 LYS A  31       48.56    -85.66                                   
REMARK 500  5 MET A  38      -90.48   -135.37                                   
REMARK 500  5 GLN A  39       82.77   -155.64                                   
REMARK 500  6 GLN A   3      113.30    -30.53                                   
REMARK 500  6 CYS A   4      -76.00    -63.81                                   
REMARK 500  6 SER A  20      -97.98   -150.09                                   
REMARK 500  6 GLN A  21      -28.25   -168.07                                   
REMARK 500  6 PRO A  28       43.78    -86.06                                   
REMARK 500  6 PRO A  30     -101.21    -57.35                                   
REMARK 500  6 LYS A  31      -77.75    -49.82                                   
REMARK 500  6 ALA A  32      140.75     66.11                                   
REMARK 500  6 CYS A  34       98.55    -67.84                                   
REMARK 500  6 CYS A  35      107.22    -50.77                                   
REMARK 500  6 MET A  38      -93.96   -132.26                                   
REMARK 500  6 GLN A  39       81.88   -155.74                                   
REMARK 500  7 THR A  19        2.89    -69.49                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     136 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 30422   RELATED DB: BMRB                                 
REMARK 900 SOLUTION STRUCTURE OF THE ZEBRAFISH GRANULIN AAE                     
DBREF  6CKU A    1    56  UNP    Q8QGN9   Q8QGN9_DANRE   793    848             
SEQRES   1 A   56  ASP VAL GLN CYS GLY GLY GLY PHE SER CYS HIS ASP GLY          
SEQRES   2 A   56  GLU THR CYS CYS PRO THR SER GLN THR THR TRP GLY CYS          
SEQRES   3 A   56  CYS PRO SER PRO LYS ALA VAL CYS CYS ASP ASP MET GLN          
SEQRES   4 A   56  HIS CYS CYS PRO ALA GLY TYR LYS CYS GLY PRO GLY GLY          
SEQRES   5 A   56  THR CYS ILE SER                                              
SHEET    1 AA1 2 VAL A   2  GLN A   3  0                                        
SHEET    2 AA1 2 SER A   9  CYS A  10 -1  O  CYS A  10   N  VAL A   2           
SHEET    1 AA2 2 THR A  15  CYS A  17  0                                        
SHEET    2 AA2 2 GLY A  25  CYS A  27 -1  O  CYS A  27   N  THR A  15           
SHEET    1 AA3 2 LYS A  47  CYS A  48  0                                        
SHEET    2 AA3 2 CYS A  54  ILE A  55 -1  O  ILE A  55   N  LYS A  47           
SSBOND   1 CYS A    4    CYS A   16                          1555   1555  2.03  
SSBOND   2 CYS A   10    CYS A   26                          1555   1555  2.03  
SSBOND   3 CYS A   17    CYS A   34                          1555   1555  2.03  
SSBOND   4 CYS A   27    CYS A   41                          1555   1555  2.03  
SSBOND   5 CYS A   35    CYS A   48                          1555   1555  2.03  
SSBOND   6 CYS A   42    CYS A   54                          1555   1555  2.02  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1                      
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1