HEADER SIGNALING PROTEIN 28-FEB-18 6CKU TITLE SOLUTION STRUCTURE OF THE ZEBRAFISH GRANULIN AAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN-AAE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 793-848; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: GRNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GRANULIN/EPITHELIN MODULE, BETA-HAIRPIN STACK, PROGRANULINS, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR P.WANG,F.NI REVDAT 5 13-NOV-24 6CKU 1 REMARK REVDAT 4 14-JUN-23 6CKU 1 REMARK REVDAT 3 08-JAN-20 6CKU 1 REMARK REVDAT 2 03-OCT-18 6CKU 1 JRNL REVDAT 1 13-JUN-18 6CKU 0 JRNL AUTH P.WANG,B.CHITRAMUTHU,A.BATEMAN,H.P.J.BENNETT,P.XU,F.NI JRNL TITL STRUCTURE DISSECTION OF ZEBRAFISH PROGRANULINS IDENTIFIES A JRNL TITL 2 WELL-FOLDED GRANULIN/EPITHELIN MODULE PROTEIN WITH PRO-CELL JRNL TITL 3 SURVIVAL ACTIVITIES. JRNL REF PROTEIN SCI. V. 27 1476 2018 JRNL REFN ESSN 1469-896X JRNL PMID 29732682 JRNL DOI 10.1002/PRO.3441 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, ARIA REMARK 3 AUTHORS : BRUNGER ET AL. (CNS), NILGES ET AL. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232731. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 760 MMHG REMARK 210 SAMPLE CONTENTS : 0.5 MM ZEBRAFISH GRANULIN AAE, REMARK 210 150 MM SODIUM CHLORIDE AND 0.2MM REMARK 210 EDTA PH 6.8 90%, H2O/10% D2O; REMARK 210 0.5 MM [U-15N] ZEBRAFISH REMARK 210 GRANULIN AAE, 10MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE AND 0.2MM EDTA PH 6.8, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNS 1.0, ARIA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 16 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 29 123.15 64.12 REMARK 500 1 MET A 38 -93.90 -132.99 REMARK 500 1 GLN A 39 82.60 -154.51 REMARK 500 2 CYS A 4 -82.43 -54.24 REMARK 500 2 GLN A 21 -75.25 -68.14 REMARK 500 2 PRO A 30 -72.36 -68.79 REMARK 500 2 LYS A 31 26.82 -75.19 REMARK 500 2 CYS A 35 107.75 -53.00 REMARK 500 2 MET A 38 -102.85 -122.81 REMARK 500 2 GLN A 39 80.26 -156.93 REMARK 500 2 HIS A 40 -172.63 -171.85 REMARK 500 2 PRO A 43 150.94 -44.43 REMARK 500 3 GLN A 3 94.82 -58.09 REMARK 500 3 SER A 20 -119.63 -148.26 REMARK 500 3 GLN A 21 -26.46 -153.32 REMARK 500 3 PRO A 30 -122.42 -67.93 REMARK 500 3 MET A 38 -98.33 -128.90 REMARK 500 3 GLN A 39 82.31 -155.04 REMARK 500 3 ALA A 44 105.59 -44.72 REMARK 500 4 CYS A 4 -76.34 -61.98 REMARK 500 4 SER A 20 -106.21 -150.40 REMARK 500 4 GLN A 21 -22.36 -141.75 REMARK 500 4 PRO A 28 35.18 -77.75 REMARK 500 4 LYS A 31 36.46 -86.75 REMARK 500 4 CYS A 34 99.32 -67.87 REMARK 500 4 CYS A 35 107.28 -51.19 REMARK 500 4 MET A 38 -98.30 -130.62 REMARK 500 4 GLN A 39 83.06 -155.51 REMARK 500 5 GLN A 3 105.15 -24.21 REMARK 500 5 SER A 20 -4.50 -151.03 REMARK 500 5 GLN A 21 -34.24 74.55 REMARK 500 5 PRO A 28 80.94 -65.09 REMARK 500 5 SER A 29 127.56 -178.96 REMARK 500 5 PRO A 30 -96.63 -45.51 REMARK 500 5 LYS A 31 48.56 -85.66 REMARK 500 5 MET A 38 -90.48 -135.37 REMARK 500 5 GLN A 39 82.77 -155.64 REMARK 500 6 GLN A 3 113.30 -30.53 REMARK 500 6 CYS A 4 -76.00 -63.81 REMARK 500 6 SER A 20 -97.98 -150.09 REMARK 500 6 GLN A 21 -28.25 -168.07 REMARK 500 6 PRO A 28 43.78 -86.06 REMARK 500 6 PRO A 30 -101.21 -57.35 REMARK 500 6 LYS A 31 -77.75 -49.82 REMARK 500 6 ALA A 32 140.75 66.11 REMARK 500 6 CYS A 34 98.55 -67.84 REMARK 500 6 CYS A 35 107.22 -50.77 REMARK 500 6 MET A 38 -93.96 -132.26 REMARK 500 6 GLN A 39 81.88 -155.74 REMARK 500 7 THR A 19 2.89 -69.49 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30422 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE ZEBRAFISH GRANULIN AAE DBREF 6CKU A 1 56 UNP Q8QGN9 Q8QGN9_DANRE 793 848 SEQRES 1 A 56 ASP VAL GLN CYS GLY GLY GLY PHE SER CYS HIS ASP GLY SEQRES 2 A 56 GLU THR CYS CYS PRO THR SER GLN THR THR TRP GLY CYS SEQRES 3 A 56 CYS PRO SER PRO LYS ALA VAL CYS CYS ASP ASP MET GLN SEQRES 4 A 56 HIS CYS CYS PRO ALA GLY TYR LYS CYS GLY PRO GLY GLY SEQRES 5 A 56 THR CYS ILE SER SHEET 1 AA1 2 VAL A 2 GLN A 3 0 SHEET 2 AA1 2 SER A 9 CYS A 10 -1 O CYS A 10 N VAL A 2 SHEET 1 AA2 2 THR A 15 CYS A 17 0 SHEET 2 AA2 2 GLY A 25 CYS A 27 -1 O CYS A 27 N THR A 15 SHEET 1 AA3 2 LYS A 47 CYS A 48 0 SHEET 2 AA3 2 CYS A 54 ILE A 55 -1 O ILE A 55 N LYS A 47 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 26 1555 1555 2.03 SSBOND 3 CYS A 17 CYS A 34 1555 1555 2.03 SSBOND 4 CYS A 27 CYS A 41 1555 1555 2.03 SSBOND 5 CYS A 35 CYS A 48 1555 1555 2.03 SSBOND 6 CYS A 42 CYS A 54 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1