HEADER BIOSYNTHETIC PROTEIN 02-MAR-18 6CLX TITLE CRYSTAL STRUCTURE OF TNMH IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CB03234; SOURCE 3 ORGANISM_TAXID: 1703937; SOURCE 4 GENE: TNMH, AMK26_31990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS METHYLTRANSFERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHANG,T.ANNAVAL,A.ADHIKARI,X.YAN,B.SHEN REVDAT 5 15-NOV-23 6CLX 1 REMARK REVDAT 4 04-OCT-23 6CLX 1 REMARK REVDAT 3 16-SEP-20 6CLX 1 JRNL REVDAT 2 04-DEC-19 6CLX 1 REMARK REVDAT 1 06-MAR-19 6CLX 0 JRNL AUTH A.ADHIKARI,C.N.TEIJARO,X.YAN,C.Y.CHANG,C.GUI,Y.C.LIU, JRNL AUTH 2 I.CRNOVCIC,D.YANG,T.ANNAVAL,C.RADER,B.SHEN JRNL TITL CHARACTERIZATION OF TNMH AS ANO-METHYLTRANSFERASE REVEALING JRNL TITL 2 INSIGHTS INTO TIANCIMYCIN BIOSYNTHESIS AND ENABLING A JRNL TITL 3 BIOCATALYTIC STRATEGY TO PREPARE ANTIBODY-TIANCIMYCIN JRNL TITL 4 CONJUGATES. JRNL REF J.MED.CHEM. V. 63 8432 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32658465 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00799 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.373 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5233 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5067 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7112 ; 1.354 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11579 ; 0.974 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 6.832 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;34.131 ;21.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;18.600 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;17.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 802 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5970 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1196 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2732 ; 1.807 ; 5.936 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2732 ; 1.807 ; 5.936 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3408 ; 3.091 ; 8.892 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3409 ; 3.091 ; 8.895 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2501 ; 1.770 ; 6.163 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2502 ; 1.769 ; 6.165 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3705 ; 3.002 ; 9.177 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5485 ; 5.641 ;69.962 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5486 ; 5.641 ;69.966 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 55.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : 0.17300 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : 1.03700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6CLW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M L-PROLINE, 0.1 M HEPES, PH 7.5, REMARK 280 10% W/V POLYETHLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.60000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.60000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 SER A 341 REMARK 465 ALA A 342 REMARK 465 ALA A 343 REMARK 465 GLY A 344 REMARK 465 MSE B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 343 REMARK 465 GLY B 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 76.62 -100.85 REMARK 500 ARG A 91 47.89 -106.47 REMARK 500 ALA A 169 42.47 -94.65 REMARK 500 ARG A 267 16.24 54.96 REMARK 500 ALA A 281 -92.28 -51.91 REMARK 500 ARG A 329 -33.51 174.92 REMARK 500 ASP B 3 -81.81 46.85 REMARK 500 ASP B 88 -55.87 -8.31 REMARK 500 ARG B 91 43.26 -89.93 REMARK 500 ARG B 171 -61.57 -106.22 REMARK 500 ASP B 200 -158.73 -155.93 REMARK 500 TRP B 212 10.55 -140.13 REMARK 500 PRO B 233 152.38 -43.63 REMARK 500 ALA B 281 28.39 -156.50 REMARK 500 PRO B 284 -162.07 -77.90 REMARK 500 ARG B 303 143.81 -171.09 REMARK 500 ARG B 329 3.49 -62.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 525 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 401 DBREF1 6CLX A 1 344 UNP A0A125SA05_9ACTN DBREF2 6CLX A A0A125SA05 1 344 DBREF1 6CLX B 1 344 UNP A0A125SA05_9ACTN DBREF2 6CLX B A0A125SA05 1 344 SEQADV 6CLX MSE A -19 UNP A0A125SA0 INITIATING METHIONINE SEQADV 6CLX GLY A -18 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER A -17 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER A -16 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -15 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -14 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -13 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -12 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -11 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A -10 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER A -9 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER A -8 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX GLY A -7 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX LEU A -6 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX VAL A -5 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX PRO A -4 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX ARG A -3 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX GLY A -2 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER A -1 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS A 0 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX MSE B -19 UNP A0A125SA0 INITIATING METHIONINE SEQADV 6CLX GLY B -18 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER B -17 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER B -16 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -15 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -14 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -13 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -12 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -11 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B -10 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER B -9 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER B -8 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX GLY B -7 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX LEU B -6 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX VAL B -5 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX PRO B -4 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX ARG B -3 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX GLY B -2 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX SER B -1 UNP A0A125SA0 EXPRESSION TAG SEQADV 6CLX HIS B 0 UNP A0A125SA0 EXPRESSION TAG SEQRES 1 A 364 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 364 LEU VAL PRO ARG GLY SER HIS MSE ALA ASP ASP ASP ALA SEQRES 3 A 364 PHE VAL HIS LEU LEU ARG LEU LYS ASP THR MSE THR PRO SEQRES 4 A 364 TRP ALA LEU ARG ALA VAL VAL THR LEU GLY VAL PRO ASP SEQRES 5 A 364 LEU VAL ALA GLU GLY GLU LYS ASP VAL SER GLU LEU ALA SEQRES 6 A 364 GLN ARG SER GLY ALA VAL PRO ASP ALA LEU ARG ARG VAL SEQRES 7 A 364 LEU ARG LEU LEU ALA ARG ARG GLY VAL PHE THR GLU PRO SEQRES 8 A 364 ARG PRO ALA VAL PHE GLY PRO THR GLY LEU SER ARG LEU SEQRES 9 A 364 LEU GLN SER ASP HIS PRO ARG SER MSE ARG PRO TRP LEU SEQRES 10 A 364 ASP LEU GLU GLY PRO VAL ALA ARG GLY ASP ARG THR CYS SEQRES 11 A 364 VAL HIS ILE LEU GLU ALA LEU ARG THR GLY GLY PRO VAL SEQRES 12 A 364 HIS GLU ARG THR TYR GLY ARG PRO VAL TRP GLU ASP LEU SEQRES 13 A 364 ALA ALA ARG PRO ALA LEU GLY ALA ALA PHE ASP ALA ALA SEQRES 14 A 364 MSE ALA GLN ARG ALA SER TRP ILE ALA GLY ASP VAL ALA SEQRES 15 A 364 ALA GLY PHE ASP TRP SER ALA VAL ARG HIS VAL MSE ASP SEQRES 16 A 364 VAL GLY GLY GLY THR GLY GLY VAL LEU ALA GLU VAL LEU SEQRES 17 A 364 ARG ALA ARG PRO GLY LEU LYS GLY THR LEU LEU ASP ARG SEQRES 18 A 364 ALA PRO THR VAL ALA ALA GLY ARG GLU ALA TRP GLY ALA SEQRES 19 A 364 SER GLU ALA GLY GLN ARG CYS THR PHE SER GLY GLY SER SEQRES 20 A 364 PHE PHE ASP THR LEU PRO SER GLY ALA ASP ALA CYS LEU SEQRES 21 A 364 LEU VAL ASN VAL LEU HIS ASP TRP ALA ASP GLU HIS ALA SEQRES 22 A 364 LEU ALA VAL LEU ARG ARG CYS ALA GLU ALA VAL GLY PRO SEQRES 23 A 364 ARG GLY ARG VAL LEU ILE ALA GLU HIS LEU VAL GLU GLU SEQRES 24 A 364 GLY ALA GLY GLY PRO GLY ALA ALA GLY LEU ALA GLU LEU SEQRES 25 A 364 ASP LEU VAL MSE MSE LEU VAL TYR GLY GLY ARG GLU ARG SEQRES 26 A 364 ARG LEU ASP GLU LEU ALA ASP LEU ALA GLY LYS ALA GLY SEQRES 27 A 364 LEU ARG ILE GLY ASP VAL SER MSE THR PRO ARG GLY LEU SEQRES 28 A 364 SER LEU VAL VAL CYS GLU ALA GLU THR SER ALA ALA GLY SEQRES 1 B 364 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 364 LEU VAL PRO ARG GLY SER HIS MSE ALA ASP ASP ASP ALA SEQRES 3 B 364 PHE VAL HIS LEU LEU ARG LEU LYS ASP THR MSE THR PRO SEQRES 4 B 364 TRP ALA LEU ARG ALA VAL VAL THR LEU GLY VAL PRO ASP SEQRES 5 B 364 LEU VAL ALA GLU GLY GLU LYS ASP VAL SER GLU LEU ALA SEQRES 6 B 364 GLN ARG SER GLY ALA VAL PRO ASP ALA LEU ARG ARG VAL SEQRES 7 B 364 LEU ARG LEU LEU ALA ARG ARG GLY VAL PHE THR GLU PRO SEQRES 8 B 364 ARG PRO ALA VAL PHE GLY PRO THR GLY LEU SER ARG LEU SEQRES 9 B 364 LEU GLN SER ASP HIS PRO ARG SER MSE ARG PRO TRP LEU SEQRES 10 B 364 ASP LEU GLU GLY PRO VAL ALA ARG GLY ASP ARG THR CYS SEQRES 11 B 364 VAL HIS ILE LEU GLU ALA LEU ARG THR GLY GLY PRO VAL SEQRES 12 B 364 HIS GLU ARG THR TYR GLY ARG PRO VAL TRP GLU ASP LEU SEQRES 13 B 364 ALA ALA ARG PRO ALA LEU GLY ALA ALA PHE ASP ALA ALA SEQRES 14 B 364 MSE ALA GLN ARG ALA SER TRP ILE ALA GLY ASP VAL ALA SEQRES 15 B 364 ALA GLY PHE ASP TRP SER ALA VAL ARG HIS VAL MSE ASP SEQRES 16 B 364 VAL GLY GLY GLY THR GLY GLY VAL LEU ALA GLU VAL LEU SEQRES 17 B 364 ARG ALA ARG PRO GLY LEU LYS GLY THR LEU LEU ASP ARG SEQRES 18 B 364 ALA PRO THR VAL ALA ALA GLY ARG GLU ALA TRP GLY ALA SEQRES 19 B 364 SER GLU ALA GLY GLN ARG CYS THR PHE SER GLY GLY SER SEQRES 20 B 364 PHE PHE ASP THR LEU PRO SER GLY ALA ASP ALA CYS LEU SEQRES 21 B 364 LEU VAL ASN VAL LEU HIS ASP TRP ALA ASP GLU HIS ALA SEQRES 22 B 364 LEU ALA VAL LEU ARG ARG CYS ALA GLU ALA VAL GLY PRO SEQRES 23 B 364 ARG GLY ARG VAL LEU ILE ALA GLU HIS LEU VAL GLU GLU SEQRES 24 B 364 GLY ALA GLY GLY PRO GLY ALA ALA GLY LEU ALA GLU LEU SEQRES 25 B 364 ASP LEU VAL MSE MSE LEU VAL TYR GLY GLY ARG GLU ARG SEQRES 26 B 364 ARG LEU ASP GLU LEU ALA ASP LEU ALA GLY LYS ALA GLY SEQRES 27 B 364 LEU ARG ILE GLY ASP VAL SER MSE THR PRO ARG GLY LEU SEQRES 28 B 364 SER LEU VAL VAL CYS GLU ALA GLU THR SER ALA ALA GLY MODRES 6CLX MSE A 1 MET MODIFIED RESIDUE MODRES 6CLX MSE A 17 MET MODIFIED RESIDUE MODRES 6CLX MSE A 93 MET MODIFIED RESIDUE MODRES 6CLX MSE A 150 MET MODIFIED RESIDUE MODRES 6CLX MSE A 174 MET MODIFIED RESIDUE MODRES 6CLX MSE A 296 MET MODIFIED RESIDUE MODRES 6CLX MSE A 297 MET MODIFIED RESIDUE MODRES 6CLX MSE A 326 MET MODIFIED RESIDUE MODRES 6CLX MSE B 1 MET MODIFIED RESIDUE MODRES 6CLX MSE B 17 MET MODIFIED RESIDUE MODRES 6CLX MSE B 93 MET MODIFIED RESIDUE MODRES 6CLX MSE B 150 MET MODIFIED RESIDUE MODRES 6CLX MSE B 174 MET MODIFIED RESIDUE MODRES 6CLX MSE B 296 MET MODIFIED RESIDUE MODRES 6CLX MSE B 297 MET MODIFIED RESIDUE MODRES 6CLX MSE B 326 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 93 8 HET MSE A 150 8 HET MSE A 174 8 HET MSE A 296 8 HET MSE A 297 8 HET MSE A 326 8 HET MSE B 1 8 HET MSE B 17 8 HET MSE B 93 8 HET MSE B 150 8 HET MSE B 174 8 HET MSE B 296 8 HET MSE B 297 8 HET MSE B 326 8 HET SAM A 401 27 HET SAM B 401 27 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *51(H2 O) HELIX 1 AA1 ASP A 5 ASP A 15 1 11 HELIX 2 AA2 THR A 16 LEU A 28 1 13 HELIX 3 AA3 GLY A 29 ALA A 35 1 7 HELIX 4 AA4 VAL A 41 SER A 48 1 8 HELIX 5 AA5 VAL A 51 ARG A 65 1 15 HELIX 6 AA6 THR A 79 GLN A 86 1 8 HELIX 7 AA7 MSE A 93 ASP A 98 1 6 HELIX 8 AA8 GLY A 101 GLY A 106 1 6 HELIX 9 AA9 ASP A 107 VAL A 111 5 5 HELIX 10 AB1 HIS A 112 GLY A 120 1 9 HELIX 11 AB2 VAL A 123 GLY A 129 1 7 HELIX 12 AB3 PRO A 131 ARG A 139 1 9 HELIX 13 AB4 ARG A 139 PHE A 165 1 27 HELIX 14 AB5 GLY A 181 ARG A 191 1 11 HELIX 15 AB6 ARG A 201 GLY A 213 1 13 HELIX 16 AB7 SER A 215 ARG A 220 1 6 HELIX 17 AB8 VAL A 244 TRP A 248 5 5 HELIX 18 AB9 ALA A 249 GLY A 265 1 17 HELIX 19 AC1 GLY A 283 VAL A 299 1 17 HELIX 20 AC2 ARG A 306 ALA A 317 1 12 HELIX 21 AC3 ASP B 3 ASP B 15 1 13 HELIX 22 AC4 THR B 16 LEU B 28 1 13 HELIX 23 AC5 GLY B 29 VAL B 34 1 6 HELIX 24 AC6 VAL B 41 SER B 48 1 8 HELIX 25 AC7 VAL B 51 ARG B 65 1 15 HELIX 26 AC8 THR B 79 LEU B 84 1 6 HELIX 27 AC9 MSE B 93 ASP B 98 1 6 HELIX 28 AD1 GLY B 101 ASP B 107 1 7 HELIX 29 AD2 ARG B 108 VAL B 111 5 4 HELIX 30 AD3 HIS B 112 GLY B 120 1 9 HELIX 31 AD4 VAL B 123 GLY B 129 1 7 HELIX 32 AD5 PRO B 131 ALA B 138 1 8 HELIX 33 AD6 ARG B 139 PHE B 165 1 27 HELIX 34 AD7 GLY B 181 ARG B 191 1 11 HELIX 35 AD8 ARG B 201 GLY B 213 1 13 HELIX 36 AD9 SER B 215 ARG B 220 1 6 HELIX 37 AE1 VAL B 244 TRP B 248 5 5 HELIX 38 AE2 ALA B 249 GLY B 265 1 17 HELIX 39 AE3 GLY B 285 VAL B 299 1 15 HELIX 40 AE4 ARG B 306 ALA B 317 1 12 SHEET 1 AA1 2 LYS A 39 ASP A 40 0 SHEET 2 AA1 2 VAL A 75 PHE A 76 -1 O PHE A 76 N LYS A 39 SHEET 1 AA2 7 CYS A 221 GLY A 225 0 SHEET 2 AA2 7 LYS A 195 ASP A 200 1 N GLY A 196 O THR A 222 SHEET 3 AA2 7 HIS A 172 VAL A 176 1 N ASP A 175 O LEU A 199 SHEET 4 AA2 7 ALA A 238 VAL A 242 1 O LEU A 240 N MSE A 174 SHEET 5 AA2 7 ARG A 269 GLU A 274 1 O LEU A 271 N CYS A 239 SHEET 6 AA2 7 SER A 332 ALA A 338 -1 O VAL A 334 N ILE A 272 SHEET 7 AA2 7 LEU A 319 MSE A 326 -1 N GLY A 322 O VAL A 335 SHEET 1 AA3 2 LYS B 39 ASP B 40 0 SHEET 2 AA3 2 VAL B 75 PHE B 76 -1 O PHE B 76 N LYS B 39 SHEET 1 AA4 7 CYS B 221 GLY B 225 0 SHEET 2 AA4 7 GLY B 196 ASP B 200 1 N LEU B 198 O THR B 222 SHEET 3 AA4 7 VAL B 173 VAL B 176 1 N ASP B 175 O THR B 197 SHEET 4 AA4 7 ALA B 238 VAL B 242 1 O LEU B 240 N MSE B 174 SHEET 5 AA4 7 ARG B 269 GLU B 274 1 O LEU B 271 N CYS B 239 SHEET 6 AA4 7 SER B 332 ALA B 338 -1 O VAL B 334 N ILE B 272 SHEET 7 AA4 7 LEU B 319 MSE B 326 -1 N GLY B 322 O VAL B 335 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C THR A 16 N MSE A 17 1555 1555 1.32 LINK C MSE A 17 N THR A 18 1555 1555 1.33 LINK C SER A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ARG A 94 1555 1555 1.34 LINK C ALA A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N ALA A 151 1555 1555 1.34 LINK C VAL A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ASP A 175 1555 1555 1.34 LINK C VAL A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N LEU A 298 1555 1555 1.33 LINK C SER A 325 N MSE A 326 1555 1555 1.33 LINK C MSE A 326 N THR A 327 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.34 LINK C THR B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N THR B 18 1555 1555 1.33 LINK C SER B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N ARG B 94 1555 1555 1.34 LINK C ALA B 149 N MSE B 150 1555 1555 1.34 LINK C MSE B 150 N ALA B 151 1555 1555 1.34 LINK C VAL B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N ASP B 175 1555 1555 1.34 LINK C VAL B 295 N MSE B 296 1555 1555 1.33 LINK C MSE B 296 N MSE B 297 1555 1555 1.33 LINK C MSE B 297 N LEU B 298 1555 1555 1.34 LINK C SER B 325 N MSE B 326 1555 1555 1.33 LINK C MSE B 326 N THR B 327 1555 1555 1.33 CISPEP 1 GLY B 283 PRO B 284 0 -7.73 SITE 1 AC1 14 MSE A 150 ARG A 153 ALA A 154 GLY A 177 SITE 2 AC1 14 GLY A 179 ASP A 200 ARG A 201 GLY A 226 SITE 3 AC1 14 SER A 227 PHE A 228 VAL A 242 ASN A 243 SITE 4 AC1 14 ASP A 247 TRP A 248 SITE 1 AC2 12 MSE B 150 ALA B 154 GLY B 177 GLY B 178 SITE 2 AC2 12 ASP B 200 ARG B 201 GLY B 226 SER B 227 SITE 3 AC2 12 PHE B 228 VAL B 242 ASN B 243 ASP B 247 CRYST1 116.220 116.220 110.400 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008604 0.004968 0.000000 0.00000 SCALE2 0.000000 0.009935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009058 0.00000 HETATM 1 N MSE A 1 -37.472 -11.646 -29.692 1.00 85.79 N HETATM 2 CA MSE A 1 -36.556 -12.539 -28.898 1.00 88.82 C HETATM 3 C MSE A 1 -35.770 -11.703 -27.917 1.00 84.71 C HETATM 4 O MSE A 1 -36.079 -11.701 -26.725 1.00 85.68 O HETATM 5 CB MSE A 1 -35.644 -13.386 -29.812 1.00 95.04 C HETATM 6 CG MSE A 1 -34.570 -14.181 -29.053 1.00103.79 C HETATM 7 SE MSE A 1 -33.619 -15.464 -30.222 1.00119.55 SE HETATM 8 CE MSE A 1 -32.305 -16.149 -28.920 1.00111.11 C