HEADER VIRAL PROTEIN/IMMUNE SYSTEM 05-MAR-18 6CMG TITLE CRYSTAL STRUCTURE OF THE HENDRA VIRUS ATTACHMENT G GLYCOPROTEIN BOUND TITLE 2 TO A POTENT CROSS-REACTIVE NEUTRALIZING HUMAN MONOCLONAL ANTIBODY TITLE 3 M102.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN G; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: M102.3 LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: IGG HEAVY CHAIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HENDRA VIRUS; SOURCE 3 ORGANISM_COMMON: ISOLATE HORSE/AUTRALIA/HENDRA/1994; SOURCE 4 ORGANISM_TAXID: 928303; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HENDRA VIRUS, ATTACHMENT, GLYCOPROTEIN, CROSS-REACTIVE, NEUTRALIZING, KEYWDS 2 ANTIBODY, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,D.NIKOLOV REVDAT 5 29-JUL-20 6CMG 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 18-DEC-19 6CMG 1 REMARK REVDAT 3 20-FEB-19 6CMG 1 REMARK REVDAT 2 25-APR-18 6CMG 1 COMPND REMARK REVDAT 1 18-APR-18 6CMG 0 JRNL AUTH K.XU,B.ROCKX,Y.XIE,B.L.DEBUYSSCHER,D.L.FUSCO,Z.ZHU,Y.P.CHAN, JRNL AUTH 2 Y.XU,T.LUU,R.Z.CER,H.FELDMANN,V.MOKASHI,D.S.DIMITROV, JRNL AUTH 3 K.A.BISHOP-LILLY,C.C.BRODER,D.B.NIKOLOV JRNL TITL CRYSTAL STRUCTURE OF THE HENDRA VIRUS ATTACHMENT G JRNL TITL 2 GLYCOPROTEIN BOUND TO A POTENT CROSS-REACTIVE NEUTRALIZING JRNL TITL 3 HUMAN MONOCLONAL ANTIBODY. JRNL REF PLOS PATHOG. V. 9 03684 2013 JRNL REFN ESSN 1553-7374 JRNL PMID 24130486 JRNL DOI 10.1371/JOURNAL.PPAT.1003684 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4275 - 5.9992 1.00 2930 155 0.2811 0.2841 REMARK 3 2 5.9992 - 4.7634 1.00 2706 155 0.2068 0.2344 REMARK 3 3 4.7634 - 4.1617 1.00 2646 140 0.1859 0.2384 REMARK 3 4 4.1617 - 3.7814 1.00 2606 122 0.1959 0.2425 REMARK 3 5 3.7814 - 3.5105 1.00 2568 128 0.2117 0.2427 REMARK 3 6 3.5105 - 3.3036 1.00 2578 127 0.2318 0.2968 REMARK 3 7 3.3036 - 3.1382 1.00 2574 138 0.2411 0.3358 REMARK 3 8 3.1382 - 3.0016 1.00 2521 139 0.2458 0.3408 REMARK 3 9 3.0016 - 2.8861 1.00 2505 146 0.2495 0.3042 REMARK 3 10 2.8861 - 2.7865 1.00 2516 145 0.2713 0.3452 REMARK 3 11 2.7865 - 2.7000 1.00 2497 135 0.2887 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7009 REMARK 3 ANGLE : 0.860 9568 REMARK 3 CHIRALITY : 0.051 1102 REMARK 3 PLANARITY : 0.006 1206 REMARK 3 DIHEDRAL : 7.218 4158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.18M (NH4)3 CITRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 217.93800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 435.87600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 326.90700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 544.84500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.96900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 217.93800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 435.87600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 544.84500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 326.90700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.96900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 121 REMARK 465 ASP B 122 REMARK 465 GLU B 123 REMARK 465 GLN B 124 REMARK 465 LEU B 125 REMARK 465 LYS B 126 REMARK 465 SER B 127 REMARK 465 CYS B 214 REMARK 465 SER C 146 REMARK 465 SER C 147 REMARK 465 LYS C 148 REMARK 465 SER C 149 REMARK 465 THR C 150 REMARK 465 SER C 151 REMARK 465 LYS C 233 REMARK 465 SER C 234 REMARK 465 CYS C 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 603 CG CD OE1 OE2 REMARK 470 THR C 28 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 856 O HOH A 860 2.01 REMARK 500 O HOH B 301 O HOH B 302 2.10 REMARK 500 OG SER A 313 O HOH A 801 2.12 REMARK 500 CB ASP A 470 OE1 GLN A 478 2.17 REMARK 500 NH1 ARG B 108 O ASP B 170 2.17 REMARK 500 O THR A 311 O HOH A 802 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 306 50.48 -115.40 REMARK 500 ASP A 329 35.80 -99.38 REMARK 500 GLU A 374 30.75 -99.33 REMARK 500 SER A 459 -158.87 -143.09 REMARK 500 GLN A 490 -169.76 -118.70 REMARK 500 ASN A 534 71.69 62.00 REMARK 500 GLN A 559 -67.34 -121.31 REMARK 500 TYR B 33 41.57 -108.00 REMARK 500 ALA B 52 -11.84 72.35 REMARK 500 SER B 53 88.43 -155.37 REMARK 500 SER B 54 129.17 -173.60 REMARK 500 THR B 57 104.63 -52.45 REMARK 500 ASP B 151 -59.27 -25.90 REMARK 500 PHE C 29 23.23 -79.68 REMARK 500 ALA C 92 -178.09 -171.25 REMARK 500 LYS C 225 57.91 -142.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 287 GLU A 288 -139.24 REMARK 500 PHE C 29 SER C 30 -140.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CMG A 176 603 UNP O89343 GLYCP_HENDH 176 603 DBREF 6CMG B 1 214 PDB 6CMG 6CMG 1 214 DBREF 6CMG C 1 235 PDB 6CMG 6CMG 1 235 SEQRES 1 A 428 GLN GLY VAL SER ASP LEU VAL GLY LEU PRO ASN GLN ILE SEQRES 2 A 428 CYS LEU GLN LYS THR THR SER THR ILE LEU LYS PRO ARG SEQRES 3 A 428 LEU ILE SER TYR THR LEU PRO ILE ASN THR ARG GLU GLY SEQRES 4 A 428 VAL CYS ILE THR ASP PRO LEU LEU ALA VAL ASP ASN GLY SEQRES 5 A 428 PHE PHE ALA TYR SER HIS LEU GLU LYS ILE GLY SER CYS SEQRES 6 A 428 THR ARG GLY ILE ALA LYS GLN ARG ILE ILE GLY VAL GLY SEQRES 7 A 428 GLU VAL LEU ASP ARG GLY ASP LYS VAL PRO SER MET PHE SEQRES 8 A 428 MET THR ASN VAL TRP THR PRO PRO ASN PRO SER THR ILE SEQRES 9 A 428 HIS HIS CYS SER SER THR TYR HIS GLU ASP PHE TYR TYR SEQRES 10 A 428 THR LEU CYS ALA VAL SER HIS VAL GLY ASP PRO ILE LEU SEQRES 11 A 428 ASN SER THR SER TRP THR GLU SER LEU SER LEU ILE ARG SEQRES 12 A 428 LEU ALA VAL ARG PRO LYS SER ASP SER GLY ASP TYR ASN SEQRES 13 A 428 GLN LYS TYR ILE ALA ILE THR LYS VAL GLU ARG GLY LYS SEQRES 14 A 428 TYR ASP LYS VAL MET PRO TYR GLY PRO SER GLY ILE LYS SEQRES 15 A 428 GLN GLY ASP THR LEU TYR PHE PRO ALA VAL GLY PHE LEU SEQRES 16 A 428 PRO ARG THR GLU PHE GLN TYR ASN ASP SER ASN CYS PRO SEQRES 17 A 428 ILE ILE HIS CYS LYS TYR SER LYS ALA GLU ASN CYS ARG SEQRES 18 A 428 LEU SER MET GLY VAL ASN SER LYS SER HIS TYR ILE LEU SEQRES 19 A 428 ARG SER GLY LEU LEU LYS TYR ASN LEU SER LEU GLY GLY SEQRES 20 A 428 ASP ILE ILE LEU GLN PHE ILE GLU ILE ALA ASP ASN ARG SEQRES 21 A 428 LEU THR ILE GLY SER PRO SER LYS ILE TYR ASN SER LEU SEQRES 22 A 428 GLY GLN PRO VAL PHE TYR GLN ALA SER TYR SER TRP ASP SEQRES 23 A 428 THR MET ILE LYS LEU GLY ASP VAL ASP THR VAL ASP PRO SEQRES 24 A 428 LEU ARG VAL GLN TRP ARG ASN ASN SER VAL ILE SER ARG SEQRES 25 A 428 PRO GLY GLN SER GLN CYS PRO ARG PHE ASN VAL CYS PRO SEQRES 26 A 428 GLU VAL CYS TRP GLU GLY THR TYR ASN ASP ALA PHE LEU SEQRES 27 A 428 ILE ASP ARG LEU ASN TRP VAL SER ALA GLY VAL TYR LEU SEQRES 28 A 428 ASN SER ASN GLN THR ALA GLU ASN PRO VAL PHE ALA VAL SEQRES 29 A 428 PHE LYS ASP ASN GLU ILE LEU TYR GLN VAL PRO LEU ALA SEQRES 30 A 428 GLU ASP ASP THR ASN ALA GLN LYS THR ILE THR ASP CYS SEQRES 31 A 428 PHE LEU LEU GLU ASN VAL ILE TRP CYS ILE SER LEU VAL SEQRES 32 A 428 GLU ILE TYR ASP THR GLY ASP SER VAL ILE ARG PRO LYS SEQRES 33 A 428 LEU PHE ALA VAL LYS ILE PRO ALA GLN CYS SER GLU SEQRES 1 B 214 GLU ILE VAL MET THR GLN SER PRO GLY THR PRO SER LEU SEQRES 2 B 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 214 GLN SER ILE ARG SER THR TYR LEU ALA TRP TYR GLN GLN SEQRES 4 B 214 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 B 214 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 214 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 B 214 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 B 214 TYR GLY ARG SER PRO SER PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS LEU TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS SEQRES 1 C 235 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 C 235 ARG GLY SER SER VAL LYS VAL SER CYS LYS SER SER GLY SEQRES 3 C 235 GLY THR PHE SER ASN TYR ALA ILE ASN TRP VAL ARG GLN SEQRES 4 C 235 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 C 235 PRO ILE LEU GLY ILE ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 C 235 GLY ARG VAL THR ILE THR THR ASP GLU SER THR SER THR SEQRES 7 C 235 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 C 235 ALA VAL TYR TYR CYS ALA ARG GLY TRP GLY ARG GLU GLN SEQRES 9 C 235 LEU ALA PRO HIS PRO SER GLN TYR TYR TYR TYR TYR TYR SEQRES 10 C 235 GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 11 C 235 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 C 235 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 C 235 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 C 235 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 C 235 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 C 235 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 C 235 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 C 235 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 C 235 CYS HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET FUC G 5 10 HET FUC G 6 10 HET NAG A 703 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 4 NAG 9(C8 H15 N O6) FORMUL 7 BMA C6 H12 O6 FORMUL 7 MAN C6 H12 O6 FORMUL 7 FUC 2(C6 H12 O5) FORMUL 9 HOH *66(H2 O) HELIX 1 AA1 THR A 373 PHE A 375 5 3 HELIX 2 AA2 ASN A 378 CYS A 382 5 5 HELIX 3 AA3 GLU A 393 SER A 398 1 6 HELIX 4 AA4 ARG B 30 THR B 32 5 3 HELIX 5 AA5 GLU B 80 PHE B 84 5 5 HELIX 6 AA6 GLN C 62 GLN C 65 5 4 HELIX 7 AA7 ARG C 87 THR C 91 5 5 HELIX 8 AA8 SER C 206 LEU C 208 5 3 SHEET 1 AA1 5 VAL A 178 SER A 179 0 SHEET 2 AA1 5 ALA A 558 LEU A 568 -1 O LEU A 567 N SER A 179 SHEET 3 AA1 5 VAL A 571 ASP A 582 -1 O ILE A 575 N ASP A 564 SHEET 4 AA1 5 VAL A 587 LYS A 596 -1 O VAL A 587 N ASP A 582 SHEET 5 AA1 5 ARG A 201 LEU A 202 -1 N ARG A 201 O ALA A 594 SHEET 1 AA2 4 VAL A 215 ASP A 225 0 SHEET 2 AA2 4 PHE A 228 ILE A 237 -1 O LEU A 234 N THR A 218 SHEET 3 AA2 4 ILE A 244 ASP A 257 -1 O GLN A 247 N GLU A 235 SHEET 4 AA2 4 PRO A 263 TRP A 271 -1 O THR A 268 N VAL A 252 SHEET 1 AA3 4 ILE A 279 HIS A 287 0 SHEET 2 AA3 4 PHE A 290 VAL A 297 -1 O ALA A 296 N HIS A 280 SHEET 3 AA3 4 LEU A 314 ALA A 320 -1 O ILE A 317 N THR A 293 SHEET 4 AA3 4 GLN A 332 ILE A 337 -1 O ILE A 337 N LEU A 314 SHEET 1 AA4 5 LYS A 339 GLU A 341 0 SHEET 2 AA4 5 ILE A 425 GLU A 430 1 O LEU A 426 N GLU A 341 SHEET 3 AA4 5 TYR A 407 ASN A 417 -1 N LYS A 415 O GLN A 427 SHEET 4 AA4 5 THR A 361 PRO A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 AA4 5 LYS A 347 PRO A 350 -1 N LYS A 347 O PHE A 369 SHEET 1 AA5 5 LYS A 339 GLU A 341 0 SHEET 2 AA5 5 ILE A 425 GLU A 430 1 O LEU A 426 N GLU A 341 SHEET 3 AA5 5 TYR A 407 ASN A 417 -1 N LYS A 415 O GLN A 427 SHEET 4 AA5 5 THR A 361 PRO A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 AA5 5 ILE A 356 GLN A 358 -1 N ILE A 356 O TYR A 363 SHEET 1 AA6 4 SER A 442 SER A 447 0 SHEET 2 AA6 4 GLN A 450 GLN A 455 -1 O VAL A 452 N TYR A 445 SHEET 3 AA6 4 LYS A 465 THR A 471 -1 O VAL A 469 N PRO A 451 SHEET 4 AA6 4 ARG A 476 TRP A 479 -1 O GLN A 478 N ASP A 468 SHEET 1 AA7 4 ALA A 511 ASP A 515 0 SHEET 2 AA7 4 VAL A 520 LEU A 526 -1 O ALA A 522 N PHE A 512 SHEET 3 AA7 4 PRO A 535 PHE A 540 -1 O ALA A 538 N GLY A 523 SHEET 4 AA7 4 ILE A 545 PRO A 550 -1 O TYR A 547 N VAL A 539 SHEET 1 AA8 4 MET B 4 SER B 7 0 SHEET 2 AA8 4 ALA B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA8 4 ASP B 71 ILE B 76 -1 O LEU B 74 N LEU B 21 SHEET 4 AA8 4 PHE B 63 SER B 68 -1 N SER B 66 O THR B 73 SHEET 1 AA9 2 SER B 12 LEU B 13 0 SHEET 2 AA9 2 GLU B 105 ILE B 106 1 O GLU B 105 N LEU B 13 SHEET 1 AB1 4 PRO B 45 ILE B 49 0 SHEET 2 AB1 4 LEU B 34 GLN B 39 -1 N TRP B 36 O LEU B 48 SHEET 3 AB1 4 VAL B 86 GLN B 91 -1 O TYR B 88 N TYR B 37 SHEET 4 AB1 4 SER B 97 PHE B 98 -1 O SER B 97 N GLN B 91 SHEET 1 AB2 4 PRO B 45 ILE B 49 0 SHEET 2 AB2 4 LEU B 34 GLN B 39 -1 N TRP B 36 O LEU B 48 SHEET 3 AB2 4 VAL B 86 GLN B 91 -1 O TYR B 88 N TYR B 37 SHEET 4 AB2 4 THR B 102 LYS B 103 -1 O THR B 102 N TYR B 87 SHEET 1 AB3 4 SER B 114 PHE B 118 0 SHEET 2 AB3 4 THR B 129 PHE B 139 -1 O ASN B 137 N SER B 114 SHEET 3 AB3 4 TYR B 173 SER B 182 -1 O TYR B 173 N PHE B 139 SHEET 4 AB3 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AB4 3 LYS B 145 VAL B 150 0 SHEET 2 AB4 3 LEU B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 3 AB4 3 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB5 4 LEU C 4 GLN C 6 0 SHEET 2 AB5 4 VAL C 18 SER C 24 -1 O LYS C 23 N VAL C 5 SHEET 3 AB5 4 THR C 78 LEU C 83 -1 O ALA C 79 N CYS C 22 SHEET 4 AB5 4 VAL C 68 ASP C 73 -1 N THR C 71 O TYR C 80 SHEET 1 AB6 6 GLU C 10 LYS C 12 0 SHEET 2 AB6 6 THR C 126 VAL C 130 1 O THR C 129 N GLU C 10 SHEET 3 AB6 6 ALA C 92 LEU C 105 -1 N ALA C 92 O VAL C 128 SHEET 4 AB6 6 ALA C 33 GLN C 39 -1 N ALA C 33 O GLY C 99 SHEET 5 AB6 6 LEU C 45 ILE C 52 -1 O MET C 48 N TRP C 36 SHEET 6 AB6 6 ILE C 57 TYR C 60 -1 O ASN C 59 N GLY C 50 SHEET 1 AB7 4 GLU C 10 LYS C 12 0 SHEET 2 AB7 4 THR C 126 VAL C 130 1 O THR C 129 N GLU C 10 SHEET 3 AB7 4 ALA C 92 LEU C 105 -1 N ALA C 92 O VAL C 128 SHEET 4 AB7 4 TYR C 112 TRP C 122 -1 O TYR C 113 N GLN C 104 SHEET 1 AB8 4 SER C 139 LEU C 143 0 SHEET 2 AB8 4 THR C 154 TYR C 164 -1 O LEU C 160 N PHE C 141 SHEET 3 AB8 4 TYR C 195 PRO C 204 -1 O VAL C 203 N ALA C 155 SHEET 4 AB8 4 VAL C 182 THR C 184 -1 N HIS C 183 O VAL C 200 SHEET 1 AB9 4 SER C 139 LEU C 143 0 SHEET 2 AB9 4 THR C 154 TYR C 164 -1 O LEU C 160 N PHE C 141 SHEET 3 AB9 4 TYR C 195 PRO C 204 -1 O VAL C 203 N ALA C 155 SHEET 4 AB9 4 VAL C 188 LEU C 189 -1 N VAL C 188 O SER C 196 SHEET 1 AC1 3 THR C 170 TRP C 173 0 SHEET 2 AC1 3 ILE C 214 ASN C 218 -1 O ASN C 216 N SER C 172 SHEET 3 AC1 3 ASP C 227 LYS C 229 -1 O LYS C 228 N CYS C 215 SSBOND 1 CYS A 189 CYS A 601 1555 1555 2.03 SSBOND 2 CYS A 216 CYS A 240 1555 1555 2.03 SSBOND 3 CYS A 282 CYS A 295 1555 1555 2.04 SSBOND 4 CYS A 382 CYS A 395 1555 1555 2.04 SSBOND 5 CYS A 387 CYS A 499 1555 1555 2.03 SSBOND 6 CYS A 493 CYS A 503 1555 1555 2.03 SSBOND 7 CYS A 565 CYS A 574 1555 1555 2.04 SSBOND 8 CYS B 23 CYS B 89 1555 1555 2.04 SSBOND 9 CYS B 134 CYS B 194 1555 1555 2.04 SSBOND 10 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 11 CYS C 159 CYS C 215 1555 1555 2.03 LINK ND2 ASN A 306 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 378 C1 NAG A 703 1555 1555 1.43 LINK ND2 ASN A 417 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 481 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 529 C1 NAG G 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O3 NAG G 1 C1 FUC G 5 1555 1555 1.44 LINK O6 NAG G 1 C1 FUC G 6 1555 1555 1.44 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.43 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.45 CISPEP 1 ASP A 473 PRO A 474 0 1.21 CISPEP 2 SER B 7 PRO B 8 0 -1.52 CISPEP 3 TYR B 140 PRO B 141 0 1.02 CISPEP 4 GLU C 167 PRO C 168 0 -5.57 CRYST1 72.916 72.916 653.814 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013714 0.007918 0.000000 0.00000 SCALE2 0.000000 0.015836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001529 0.00000