HEADER TRANSFERASE 06-MAR-18 6CMW TITLE CRYSTAL STRUCTURE OF ZEBRAFISH PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5- TITLE 2 KINASE ALPHA ISOFORM WITH BOUND ATP/CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE, TYPE I, ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE,TYPE I,ALPHA,A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PIP5K1AA, PIP5K1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ATP, PIP5KA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZENG,D.SUI,J.HU REVDAT 4 04-OCT-23 6CMW 1 LINK REVDAT 3 03-APR-19 6CMW 1 JRNL REVDAT 2 21-MAR-18 6CMW 1 AUTHOR SPRSDE REVDAT 1 14-MAR-18 6CMW 0 SPRSDE 21-MAR-18 6CMW 5C3V JRNL AUTH X.ZENG,A.UYAR,D.SUI,N.DONYAPOUR,D.WU,A.DICKSON,J.HU JRNL TITL STRUCTURAL INSIGHTS INTO LETHAL CONTRACTURAL SYNDROME TYPE 3 JRNL TITL 2 (LCCS3) CAUSED BY A MISSENSE MUTATION OF PIP5K GAMMA. JRNL REF BIOCHEM. J. V. 475 2257 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29959184 JRNL DOI 10.1042/BCJ20180326 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9804 - 6.2869 1.00 1394 146 0.1935 0.2293 REMARK 3 2 6.2869 - 4.9943 1.00 1333 133 0.2048 0.2829 REMARK 3 3 4.9943 - 4.3643 1.00 1269 158 0.1699 0.2032 REMARK 3 4 4.3643 - 3.9658 1.00 1244 165 0.1946 0.2602 REMARK 3 5 3.9658 - 3.6818 1.00 1275 122 0.2338 0.2836 REMARK 3 6 3.6818 - 3.4649 1.00 1263 140 0.2325 0.3413 REMARK 3 7 3.4649 - 3.2915 1.00 1216 163 0.2711 0.3194 REMARK 3 8 3.2915 - 3.1483 1.00 1266 125 0.3056 0.3565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2452 REMARK 3 ANGLE : 1.369 3329 REMARK 3 CHIRALITY : 0.053 364 REMARK 3 PLANARITY : 0.006 427 REMARK 3 DIHEDRAL : 16.613 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11470 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.20 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN WITH 2 MM ATP AND 10 REMARK 280 MM MGCL2, MIXED WITH 14% PEG8000, 100 MM SODIUM CACODYLATE, PH REMARK 280 6.5, 160 MM CALCIUM ACETATE AND 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.74200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.29500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.11300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.29500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.37100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.29500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.29500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.11300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.29500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.29500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.37100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.74200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.74200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 46 REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 GLU A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 TYR A 54 REMARK 465 LYS A 55 REMARK 465 LYS A 56 REMARK 465 ARG A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 GLU A 315 REMARK 465 ALA A 316 REMARK 465 SER A 317 REMARK 465 THR A 318 REMARK 465 ALA A 319 REMARK 465 VAL A 320 REMARK 465 PRO A 321 REMARK 465 ASP A 322 REMARK 465 THR A 323 REMARK 465 GLN A 324 REMARK 465 LYS A 325 REMARK 465 LYS A 326 REMARK 465 GLY A 327 REMARK 465 GLN A 328 REMARK 465 GLY A 329 REMARK 465 GLN A 330 REMARK 465 LYS A 331 REMARK 465 PRO A 332 REMARK 465 LEU A 333 REMARK 465 TYR A 334 REMARK 465 CYS A 335 REMARK 465 THR A 336 REMARK 465 ALA A 337 REMARK 465 ILE A 338 REMARK 465 GLU A 339 REMARK 465 SER A 340 REMARK 465 ILE A 341 REMARK 465 GLN A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 SER A 345 REMARK 465 LYS A 346 REMARK 465 SER A 347 REMARK 465 LYS A 348 REMARK 465 THR A 349 REMARK 465 SER A 350 REMARK 465 PRO A 351 REMARK 465 GLN A 352 REMARK 465 PRO A 353 REMARK 465 TYR A 354 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 LEU A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 LEU A 389 REMARK 465 GLU A 390 REMARK 465 HIS A 391 REMARK 465 SER A 392 REMARK 465 TRP A 393 REMARK 465 LYS A 394 REMARK 465 ALA A 395 REMARK 465 LEU A 396 REMARK 465 LEU A 397 REMARK 465 HIS A 398 REMARK 465 ASP A 399 REMARK 465 GLY A 400 REMARK 465 ASP A 401 REMARK 465 SER A 427 REMARK 465 GLN A 428 REMARK 465 LEU A 429 REMARK 465 LYS A 430 REMARK 465 THR A 431 REMARK 465 LEU A 432 REMARK 465 GLU A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 57 OG1 CG2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 SER A 100 OG REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 SER A 103 OG REMARK 470 SER A 104 OG REMARK 470 SER A 105 OG REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 SER A 151 OG REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 SER A 156 OG REMARK 470 ASP A 212 CG OD1 OD2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 VAL A 229 CG1 CG2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 SER A 282 OG REMARK 470 MET A 357 CG SD CE REMARK 470 PHE A 363 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 365 OG REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 371 CG CD1 CD2 REMARK 470 VAL A 372 CG1 CG2 REMARK 470 GLN A 381 CG CD OE1 NE2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 THR A 402 OG1 CG2 REMARK 470 VAL A 403 CG1 CG2 REMARK 470 SER A 404 OG REMARK 470 VAL A 405 CG1 CG2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 166 N ARG A 227 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 151 90.77 -60.86 REMARK 500 ALA A 228 -78.87 -52.66 REMARK 500 LYS A 238 -26.89 -148.10 REMARK 500 LYS A 243 19.82 55.44 REMARK 500 CYS A 420 33.75 -97.23 REMARK 500 SER A 421 -25.96 -158.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 378 OD2 REMARK 620 2 ATP A 501 O2G 87.6 REMARK 620 3 ATP A 501 O2A 77.6 72.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 378 OD1 REMARK 620 2 ASP A 378 OD2 49.4 REMARK 620 3 ATP A 501 O1G 92.2 57.1 REMARK 620 4 ATP A 501 O1B 71.8 85.5 60.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 DBREF 6CMW A 49 431 UNP Q503I3 Q503I3_DANRE 49 431 SEQADV 6CMW MET A 46 UNP Q503I3 INITIATING METHIONINE SEQADV 6CMW ALA A 47 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW SER A 48 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW LEU A 432 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW GLU A 433 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 434 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 435 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 436 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 437 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 438 UNP Q503I3 EXPRESSION TAG SEQADV 6CMW HIS A 439 UNP Q503I3 EXPRESSION TAG SEQRES 1 A 394 MET ALA SER THR GLY GLU THR THR TYR LYS LYS THR THR SEQRES 2 A 394 SER SER ALA LEU LYS GLY ALA ILE GLN LEU GLY ILE THR SEQRES 3 A 394 HIS SER VAL GLY SER LEU SER GLN LYS PRO GLU ARG ASP SEQRES 4 A 394 VAL LEU MET GLN ASP PHE GLU VAL VAL GLU SER ILE PHE SEQRES 5 A 394 PHE PRO SER GLN GLY SER SER SER THR PRO GLY HIS HIS SEQRES 6 A 394 HIS GLY ASP PHE LYS PHE LYS THR TYR ALA PRO ILE ALA SEQRES 7 A 394 PHE ARG TYR PHE ARG GLU MET PHE GLY ILE ARG PRO ASP SEQRES 8 A 394 ASP TYR LEU TYR SER LEU CYS ASN GLU PRO LEU ILE GLU SEQRES 9 A 394 LEU SER ASN PRO GLY ALA SER GLY SER LEU PHE TYR VAL SEQRES 10 A 394 SER SER ASP ASP GLU PHE ILE ILE LYS THR VAL GLN HIS SEQRES 11 A 394 LYS GLU ALA GLU PHE LEU GLN THR LEU LEU PRO GLY TYR SEQRES 12 A 394 PHE MET ASN LEU ASN GLN ASN MET ARG THR LEU LEU PRO SEQRES 13 A 394 LYS PHE TYR GLY LEU TYR CYS VAL GLN ALA ASP GLY LYS SEQRES 14 A 394 ASN ILE ARG ILE VAL VAL MET ASN ASN LEU LEU PRO ARG SEQRES 15 A 394 ALA VAL PRO MET HIS LEU LYS PHE ASP LEU LYS GLY SER SEQRES 16 A 394 THR TYR LYS ARG ARG ALA SER PRO LYS GLU ARG SER LYS SEQRES 17 A 394 GLY VAL PRO THR TYR LYS ASP LEU ASP PHE MET GLN ASP SEQRES 18 A 394 MET PRO GLU GLY ILE LEU LEU GLU ASN ASP HIS TYR THR SEQRES 19 A 394 ALA LEU SER ARG THR MET GLN ARG ASP CYS ARG VAL LEU SEQRES 20 A 394 GLN SER PHE LYS ILE MET ASP TYR SER LEU LEU VAL GLY SEQRES 21 A 394 ILE HIS ILE LEU HIS ARG ALA GLY GLU GLU ALA SER THR SEQRES 22 A 394 ALA VAL PRO ASP THR GLN LYS LYS GLY GLN GLY GLN LYS SEQRES 23 A 394 PRO LEU TYR CYS THR ALA ILE GLU SER ILE GLN GLY GLU SEQRES 24 A 394 SER LYS SER LYS THR SER PRO GLN PRO TYR GLU SER MET SEQRES 25 A 394 GLY GLY ILE PRO ALA PHE ASN SER LYS GLY GLU ARG LEU SEQRES 26 A 394 LEU VAL PHE ILE GLY ILE ILE ASP ILE LEU GLN SER TYR SEQRES 27 A 394 ARG LEU VAL LYS LYS LEU GLU HIS SER TRP LYS ALA LEU SEQRES 28 A 394 LEU HIS ASP GLY ASP THR VAL SER VAL HIS ARG PRO SER SEQRES 29 A 394 PHE TYR ALA ASP ARG PHE GLN LYS PHE MET CYS SER THR SEQRES 30 A 394 VAL PHE ARG LYS SER GLN LEU LYS THR LEU GLU HIS HIS SEQRES 31 A 394 HIS HIS HIS HIS HET ATP A 501 31 HET CA A 502 1 HET CA A 503 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 CA 2(CA 2+) HELIX 1 AA1 SER A 59 SER A 78 1 20 HELIX 2 AA2 LEU A 86 GLU A 91 5 6 HELIX 3 AA3 ALA A 120 PHE A 131 1 12 HELIX 4 AA4 ARG A 134 ASN A 144 1 11 HELIX 5 AA5 GLN A 174 ASN A 193 1 20 HELIX 6 AA6 SER A 247 SER A 252 1 6 HELIX 7 AA7 LYS A 259 MET A 267 1 9 HELIX 8 AA8 GLU A 274 PHE A 295 1 22 HELIX 9 AA9 HIS A 406 CYS A 420 1 15 SHEET 1 AA1 7 VAL A 93 PHE A 98 0 SHEET 2 AA1 7 PHE A 114 TYR A 119 -1 O PHE A 116 N ILE A 96 SHEET 3 AA1 7 GLY A 205 ALA A 211 -1 O CYS A 208 N LYS A 117 SHEET 4 AA1 7 LYS A 214 ASN A 222 -1 O ILE A 218 N TYR A 207 SHEET 5 AA1 7 PHE A 168 THR A 172 -1 N ILE A 169 O MET A 221 SHEET 6 AA1 7 PHE A 160 VAL A 162 -1 N TYR A 161 O ILE A 170 SHEET 7 AA1 7 ILE A 148 LEU A 150 -1 N ILE A 148 O VAL A 162 SHEET 1 AA2 5 THR A 257 TYR A 258 0 SHEET 2 AA2 5 LEU A 233 LEU A 237 1 N ASP A 236 O TYR A 258 SHEET 3 AA2 5 SER A 301 ILE A 308 -1 O VAL A 304 N PHE A 235 SHEET 4 AA2 5 ARG A 369 ILE A 377 -1 O GLY A 375 N LEU A 303 SHEET 5 AA2 5 ILE A 360 PHE A 363 -1 N ALA A 362 O LEU A 370 LINK OD2 ASP A 378 CA CA A 502 1555 1555 2.72 LINK OD1 ASP A 378 CA CA A 503 1555 1555 2.54 LINK OD2 ASP A 378 CA CA A 503 1555 1555 2.70 LINK O2G ATP A 501 CA CA A 502 1555 1555 2.44 LINK O2A ATP A 501 CA CA A 502 1555 1555 2.51 LINK O1G ATP A 501 CA CA A 503 1555 1555 2.48 LINK O1B ATP A 501 CA CA A 503 1555 1555 2.63 SITE 1 AC1 18 GLY A 154 ALA A 155 SER A 156 SER A 158 SITE 2 AC1 18 PHE A 160 ILE A 169 LYS A 171 MET A 221 SITE 3 AC1 18 ASN A 222 ASN A 223 LEU A 224 ASP A 236 SITE 4 AC1 18 THR A 257 LEU A 303 ILE A 377 ASP A 378 SITE 5 AC1 18 CA A 502 CA A 503 SITE 1 AC2 5 LYS A 238 ASP A 299 SER A 301 ASP A 378 SITE 2 AC2 5 ATP A 501 SITE 1 AC3 2 ASP A 378 ATP A 501 CRYST1 88.590 88.590 157.484 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006350 0.00000