HEADER CHAPERONE/ANTIBIOTIC 07-MAR-18 6CN8 TITLE HIGH-RESOLUTION STRUCTURE OF CLPC1-NTD BINDING TO RUFOMYCIN-I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL DOMAIN (UNP RESIDUES 1-145); COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RUFOMYCIN I; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 ATCC: RV3596C; SOURCE 5 GENE: CLPC1, RV3596C, MTCY07H7B.26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A+; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOMYCES ATRATUS; SOURCE 12 ORGANISM_TAXID: 1893 KEYWDS MYCOBACTERIUM TUBERCULOSIS, RUFOMYCIN I, MACROCYCLIC PEPTIDE, CLPC1- KEYWDS 2 NTD, CHAPERONE, ATP-DEPENDENT PROTEASE, CHAPERONE-ANTIBIOTIC KEYWDS 3 COMPLEX, ATPASE AAA+, NATURAL PRODUCT EXPDTA X-RAY DIFFRACTION AUTHOR C.ABAD-ZAPATERO,N.W.WOLF REVDAT 4 15-NOV-23 6CN8 1 LINK REVDAT 3 04-OCT-23 6CN8 1 LINK REVDAT 2 26-JUN-19 6CN8 1 JRNL REVDAT 1 05-JUN-19 6CN8 0 JRNL AUTH N.M.WOLF,H.LEE,M.P.CHOULES,G.F.PAULI,R.PHANSALKAR, JRNL AUTH 2 J.R.ANDERSON,W.GAO,J.REN,B.D.SANTARSIERO,H.LEE,J.CHENG, JRNL AUTH 3 Y.Y.JIN,N.A.HO,N.M.DUC,J.W.SUH,C.ABAD-ZAPATERO,S.CHO JRNL TITL HIGH-RESOLUTION STRUCTURE OF CLPC1-RUFOMYCIN AND LIGAND JRNL TITL 2 BINDING STUDIES PROVIDE A FRAMEWORK TO DESIGN AND OPTIMIZE JRNL TITL 3 ANTI-TUBERCULOSIS LEADS. JRNL REF ACS INFECT DIS. V. 5 829 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 30990022 JRNL DOI 10.1021/ACSINFECDIS.8B00276 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4045 - 3.5930 1.00 2751 150 0.1722 0.2219 REMARK 3 2 3.5930 - 2.8548 1.00 2600 135 0.1677 0.1760 REMARK 3 3 2.8548 - 2.4948 1.00 2534 142 0.1599 0.1761 REMARK 3 4 2.4948 - 2.2671 1.00 2545 126 0.1371 0.1569 REMARK 3 5 2.2671 - 2.1048 1.00 2482 162 0.1425 0.1604 REMARK 3 6 2.1048 - 1.9808 1.00 2500 151 0.1431 0.1485 REMARK 3 7 1.9808 - 1.8817 1.00 2514 125 0.1469 0.1707 REMARK 3 8 1.8817 - 1.7998 1.00 2470 134 0.1452 0.1868 REMARK 3 9 1.7998 - 1.7306 1.00 2479 150 0.1441 0.1863 REMARK 3 10 1.7306 - 1.6709 1.00 2454 138 0.1533 0.2035 REMARK 3 11 1.6709 - 1.6187 1.00 2487 117 0.1534 0.1730 REMARK 3 12 1.6187 - 1.5724 1.00 2444 154 0.1529 0.2036 REMARK 3 13 1.5724 - 1.5311 1.00 2473 145 0.1524 0.1731 REMARK 3 14 1.5311 - 1.4937 1.00 2447 133 0.1642 0.1892 REMARK 3 15 1.4937 - 1.4598 1.00 2465 134 0.1677 0.2017 REMARK 3 16 1.4598 - 1.4287 1.00 2443 142 0.2013 0.2300 REMARK 3 17 1.4287 - 1.4002 1.00 2441 121 0.2310 0.2502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1294 REMARK 3 ANGLE : 1.112 1754 REMARK 3 CHIRALITY : 0.075 204 REMARK 3 PLANARITY : 0.005 224 REMARK 3 DIHEDRAL : 18.142 485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1001310049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078100 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) WITH REMARK 200 BIMORPHIC K-B MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.403 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 58.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 24.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3WDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM/POTASSIUM PHOSPHATE, PH REMARK 280 6.2, 2.5 M SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.87900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.87900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 54.87900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 54.87900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 54.87900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 54.87900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 82.31850 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.43950 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 82.31850 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 82.31850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 82.31850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 27.43950 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 82.31850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 27.43950 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 82.31850 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 27.43950 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 82.31850 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 27.43950 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 27.43950 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 82.31850 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 27.43950 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 82.31850 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 82.31850 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 82.31850 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 27.43950 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 82.31850 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 82.31850 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 27.43950 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 27.43950 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 27.43950 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 82.31850 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 27.43950 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 82.31850 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 27.43950 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 82.31850 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 82.31850 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 82.31850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 208 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 209 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE RUFOMYCIN I IS CYCLIC PEPTIDE, A MEMBER OF ANTIMICROBIAL CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: RUFOMYCIN I REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 NIY B 3 -53.88 -124.56 REMARK 500 F7S B 5 -141.91 56.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 112 O REMARK 620 2 GLU A 115 OE1 110.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 137 OE1 REMARK 620 2 GLN A 140 OE1 97.7 REMARK 620 3 HOH A 390 O 36.4 113.9 REMARK 620 4 HOH A 400 O 36.4 112.6 1.4 REMARK 620 5 HOH A 401 O 43.2 108.3 10.2 9.1 REMARK 620 6 HOH A 417 O 35.1 105.5 8.5 7.2 8.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 350 O REMARK 620 2 HOH A 350 O 95.8 REMARK 620 3 HOH A 427 O 95.6 89.0 REMARK 620 4 HOH A 427 O 89.0 167.2 78.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 357 O REMARK 620 2 HOH A 357 O 95.6 REMARK 620 3 HOH A 427 O 88.7 95.2 REMARK 620 4 HOH A 427 O 167.9 88.7 79.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 209 DBREF 6CN8 A 1 145 UNP P9WPC9 CLPC1_MYCTU 1 145 DBREF 6CN8 B 1 7 PDB 6CN8 6CN8 1 7 SEQADV 6CN8 LYS A 146 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 LEU A 147 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 ALA A 148 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 ALA A 149 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 ALA A 150 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 LEU A 151 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 GLU A 152 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 153 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 154 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 155 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 156 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 157 UNP P9WPC9 EXPRESSION TAG SEQADV 6CN8 HIS A 158 UNP P9WPC9 EXPRESSION TAG SEQRES 1 A 158 MET PHE GLU ARG PHE THR ASP ARG ALA ARG ARG VAL VAL SEQRES 2 A 158 VAL LEU ALA GLN GLU GLU ALA ARG MET LEU ASN HIS ASN SEQRES 3 A 158 TYR ILE GLY THR GLU HIS ILE LEU LEU GLY LEU ILE HIS SEQRES 4 A 158 GLU GLY GLU GLY VAL ALA ALA LYS SER LEU GLU SER LEU SEQRES 5 A 158 GLY ILE SER LEU GLU GLY VAL ARG SER GLN VAL GLU GLU SEQRES 6 A 158 ILE ILE GLY GLN GLY GLN GLN ALA PRO SER GLY HIS ILE SEQRES 7 A 158 PRO PHE THR PRO ARG ALA LYS LYS VAL LEU GLU LEU SER SEQRES 8 A 158 LEU ARG GLU ALA LEU GLN LEU GLY HIS ASN TYR ILE GLY SEQRES 9 A 158 THR GLU HIS ILE LEU LEU GLY LEU ILE ARG GLU GLY GLU SEQRES 10 A 158 GLY VAL ALA ALA GLN VAL LEU VAL LYS LEU GLY ALA GLU SEQRES 11 A 158 LEU THR ARG VAL ARG GLN GLN VAL ILE GLN LEU LEU SER SEQRES 12 A 158 GLY TYR LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 B 7 F7P MLE NIY ALA F7S LEU F7V HET F7P B 1 20 HET MLE B 2 9 HET NIY B 3 15 HET F7S B 5 10 HET F7V B 7 8 HET PO4 A 201 5 HET CL A 202 1 HET NA A 203 1 HET CL A 204 1 HET NA A 205 1 HET CL A 206 1 HET CL A 207 1 HET NA A 208 1 HET NA A 209 1 HETNAM F7P 1-[(3R)-3-HYDROXY-2-METHYLBUTAN-2-YL]-L-TRYPTOPHAN HETNAM MLE N-METHYLLEUCINE HETNAM NIY META-NITRO-TYROSINE HETNAM F7S (4S)-5-HYDROXY-N-METHYL-L-LEUCINE HETNAM F7V (2S,4E)-2-AMINOHEX-4-ENOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 F7P C16 H22 N2 O3 FORMUL 2 MLE C7 H15 N O2 FORMUL 2 NIY C9 H10 N2 O5 FORMUL 2 F7S C7 H15 N O3 FORMUL 2 F7V C6 H11 N O2 FORMUL 3 PO4 O4 P 3- FORMUL 4 CL 4(CL 1-) FORMUL 5 NA 4(NA 1+) FORMUL 12 HOH *206(H2 O) HELIX 1 AA1 MET A 1 PHE A 5 5 5 HELIX 2 AA2 THR A 6 LEU A 23 1 18 HELIX 3 AA3 GLY A 29 GLY A 41 1 13 HELIX 4 AA4 GLY A 43 LEU A 52 1 10 HELIX 5 AA5 SER A 55 ILE A 67 1 13 HELIX 6 AA6 THR A 81 GLY A 99 1 19 HELIX 7 AA7 GLY A 104 GLY A 116 1 13 HELIX 8 AA8 GLY A 118 LEU A 127 1 10 HELIX 9 AA9 GLU A 130 GLY A 144 1 15 HELIX 10 AB1 GLY A 144 GLU A 152 1 9 LINK SD MET A 1 C5 F7P B 1 1555 1555 1.76 LINK C F7P B 1 N MLE B 2 1555 1555 1.34 LINK N F7P B 1 C F7V B 7 1555 1555 1.43 LINK C MLE B 2 N NIY B 3 1555 1555 1.33 LINK C NIY B 3 N ALA B 4 1555 1555 1.33 LINK C ALA B 4 N F7S B 5 1555 1555 1.39 LINK C F7S B 5 N LEU B 6 1555 1555 1.27 LINK CD F7S B 5 N LEU B 6 1555 1555 1.60 LINK C LEU B 6 N F7V B 7 1555 1555 1.33 LINK O LEU A 112 NA NA A 203 1555 1555 2.86 LINK OE1 GLU A 115 NA NA A 203 1555 1555 2.76 LINK OE1 GLN A 137 NA NA A 205 1555 5555 2.41 LINK OE1 GLN A 140 NA NA A 205 1555 5555 2.34 LINK NA NA A 205 O HOH A 390 1555 9555 2.41 LINK NA NA A 205 O HOH A 400 1555 9555 2.45 LINK NA NA A 205 O HOH A 401 1555 9555 2.46 LINK NA NA A 205 O HOH A 417 1555 9555 2.42 LINK NA NA A 208 O HOH A 350 1555 1555 2.33 LINK NA NA A 208 O HOH A 350 1555 9555 2.33 LINK NA NA A 208 O HOH A 427 1555 1555 2.47 LINK NA NA A 208 O HOH A 427 1555 5555 2.47 LINK NA NA A 209 O HOH A 357 1555 1555 2.43 LINK NA NA A 209 O HOH A 357 1555 5555 2.43 LINK NA NA A 209 O HOH A 427 1555 1555 2.44 LINK NA NA A 209 O HOH A 427 1555 5555 2.44 CISPEP 1 F7P B 1 MLE B 2 0 -2.13 SITE 1 AC1 10 TYR A 27 GLY A 29 THR A 30 GLU A 31 SITE 2 AC1 10 THR A 81 ARG A 83 GLY A 118 VAL A 119 SITE 3 AC1 10 HOH A 326 HOH A 340 SITE 1 AC2 6 THR A 30 GLY A 118 VAL A 119 ALA A 120 SITE 2 AC2 6 ALA A 121 NA A 203 SITE 1 AC3 5 VAL A 87 LEU A 112 GLU A 115 GLY A 116 SITE 2 AC3 5 CL A 202 SITE 1 AC4 4 THR A 6 GLY A 104 THR A 105 HOH A 453 SITE 1 AC5 6 GLN A 137 GLN A 140 HOH A 390 HOH A 400 SITE 2 AC5 6 HOH A 401 HOH A 417 SITE 1 AC6 1 GLU A 57 SITE 1 AC7 4 MET A 1 PHE A 2 GLU A 3 HOH A 414 SITE 1 AC8 3 NA A 209 HOH A 350 HOH A 427 SITE 1 AC9 3 NA A 208 HOH A 357 HOH A 427 CRYST1 109.758 109.758 109.758 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009111 0.00000