HEADER PROTEIN BINDING 11-MAR-18 6CO4 TITLE STRUCTURE OF THE RPN13-RPN2 COMPLEX PROVIDES INSIGHTS FOR RPN13 AND TITLE 2 UCH37 AS ANTICANCER TARGETS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-150; COMPND 5 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN,GP110,ADHESION-REGULATING COMPND 6 MOLECULE 1,ARM-1,PROTEASOME REGULATORY PARTICLE NON-ATPASE 13,HRPN13, COMPND 7 RPN13 HOMOLOG; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 940-953; COMPND 13 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN2,26S PROTEASOME COMPND 14 REGULATORY SUBUNIT S1,26S PROTEASOME SUBUNIT P112; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADRM1, GP110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PSMD1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN RECEPTOR BINDING, PROTEASOME SCAFFOLDING PROTEIN, PROTEIN KEYWDS 2 BINDING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR X.LU,K.J.WALTERS REVDAT 4 14-JUN-23 6CO4 1 REMARK REVDAT 3 23-MAR-22 6CO4 1 REMARK REVDAT 2 20-FEB-19 6CO4 1 REMARK REVDAT 1 04-APR-18 6CO4 0 SPRSDE 04-APR-18 6CO4 2NBK JRNL AUTH X.LU,U.NOWICKA,V.SRIDHARAN,F.LIU,L.RANDLES,D.HYMEL,M.DYBA, JRNL AUTH 2 S.G.TARASOV,N.I.TARASOVA,X.Z.ZHAO,J.HAMAZAKI,S.MURATA, JRNL AUTH 3 T.R.BURKE,K.J.WALTERS JRNL TITL STRUCTURE OF THE RPN13-RPN2 COMPLEX PROVIDES INSIGHTS FOR JRNL TITL 2 RPN13 AND UCH37 AS ANTICANCER TARGETS. JRNL REF NAT COMMUN V. 8 15540 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28598414 JRNL DOI 10.1038/NCOMMS15540 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233119. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT BAR REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-13C; U-15N] ADRM1, 0.7 REMARK 210 MM [U-13C; U-15N] PSMD1, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACO; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HALF-FILTERED 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 850 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, NMRPIPE, TOPSPIN, TALOS, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 MET A 133 REMARK 465 PRO A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 LEU A 137 REMARK 465 GLY A 138 REMARK 465 ALA A 139 REMARK 465 SER A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 HIS A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 ALA A 149 REMARK 465 LEU A 150 REMARK 465 GLY B 936 REMARK 465 PRO B 937 REMARK 465 GLY B 938 REMARK 465 SER B 939 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 25 122.49 -174.20 REMARK 500 1 THR A 36 21.89 -147.76 REMARK 500 1 SER A 90 -35.74 167.95 REMARK 500 1 ASP B 952 84.76 -69.38 REMARK 500 2 GLU A 25 123.14 -174.24 REMARK 500 2 THR A 36 24.03 -148.82 REMARK 500 2 SER A 90 -43.82 169.89 REMARK 500 3 GLU A 25 122.76 -174.02 REMARK 500 3 SER A 90 -33.49 166.75 REMARK 500 3 PRO B 945 -174.74 -58.97 REMARK 500 4 GLU A 25 122.54 -173.31 REMARK 500 4 SER A 90 -33.68 167.48 REMARK 500 5 GLU A 25 122.76 -173.93 REMARK 500 5 ASP A 78 11.37 59.16 REMARK 500 5 SER A 90 -39.63 168.20 REMARK 500 6 GLU A 25 122.82 -173.51 REMARK 500 6 THR A 36 20.11 -141.90 REMARK 500 6 SER A 90 -33.43 168.29 REMARK 500 6 ASP B 952 86.13 -63.22 REMARK 500 7 GLU A 25 122.37 -174.16 REMARK 500 7 THR A 36 22.64 -143.26 REMARK 500 7 ASP A 78 12.37 59.23 REMARK 500 7 SER A 90 -29.35 167.67 REMARK 500 7 PRO B 945 -175.41 -55.49 REMARK 500 7 ASP B 952 85.58 -69.40 REMARK 500 8 GLU A 25 122.04 -174.76 REMARK 500 8 THR A 36 20.54 -145.34 REMARK 500 8 SER A 90 -37.35 167.92 REMARK 500 8 ASP B 952 84.62 -63.16 REMARK 500 9 GLU A 25 122.67 -174.56 REMARK 500 9 THR A 36 24.23 -143.85 REMARK 500 9 CYS A 88 74.61 -117.36 REMARK 500 9 SER A 90 -34.05 168.58 REMARK 500 9 ASP B 952 85.50 -69.41 REMARK 500 10 GLU A 25 122.54 -173.61 REMARK 500 10 ASP A 78 11.59 58.95 REMARK 500 10 SER A 90 -43.00 169.66 REMARK 500 11 GLU A 25 122.70 -174.61 REMARK 500 11 SER A 90 -37.00 168.90 REMARK 500 11 PRO B 945 177.12 -58.68 REMARK 500 11 ASP B 952 85.85 -68.36 REMARK 500 12 GLU A 25 122.86 -173.59 REMARK 500 12 SER A 90 -37.77 167.30 REMARK 500 13 GLU A 25 122.28 -173.91 REMARK 500 13 SER A 90 -33.13 168.03 REMARK 500 13 ASP B 952 84.94 -68.98 REMARK 500 14 GLU A 25 122.84 -173.98 REMARK 500 14 SER A 90 -44.57 168.43 REMARK 500 14 PRO B 945 173.79 -58.58 REMARK 500 15 GLU A 25 122.92 -175.14 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25979 RELATED DB: BMRB DBREF 6CO4 A 1 150 UNP Q16186 ADRM1_HUMAN 1 150 DBREF 6CO4 B 940 953 UNP Q99460 PSMD1_HUMAN 940 953 SEQADV 6CO4 GLY A -3 UNP Q16186 EXPRESSION TAG SEQADV 6CO4 PRO A -2 UNP Q16186 EXPRESSION TAG SEQADV 6CO4 GLY A -1 UNP Q16186 EXPRESSION TAG SEQADV 6CO4 SER A 0 UNP Q16186 EXPRESSION TAG SEQADV 6CO4 GLY B 936 UNP Q99460 EXPRESSION TAG SEQADV 6CO4 PRO B 937 UNP Q99460 EXPRESSION TAG SEQADV 6CO4 GLY B 938 UNP Q99460 EXPRESSION TAG SEQADV 6CO4 SER B 939 UNP Q99460 EXPRESSION TAG SEQRES 1 A 154 GLY PRO GLY SER MET THR THR SER GLY ALA LEU PHE PRO SEQRES 2 A 154 SER LEU VAL PRO GLY SER ARG GLY ALA SER ASN LYS TYR SEQRES 3 A 154 LEU VAL GLU PHE ARG ALA GLY LYS MET SER LEU LYS GLY SEQRES 4 A 154 THR THR VAL THR PRO ASP LYS ARG LYS GLY LEU VAL TYR SEQRES 5 A 154 ILE GLN GLN THR ASP ASP SER LEU ILE HIS PHE CYS TRP SEQRES 6 A 154 LYS ASP ARG THR SER GLY ASN VAL GLU ASP ASP LEU ILE SEQRES 7 A 154 ILE PHE PRO ASP ASP CYS GLU PHE LYS ARG VAL PRO GLN SEQRES 8 A 154 CYS PRO SER GLY ARG VAL TYR VAL LEU LYS PHE LYS ALA SEQRES 9 A 154 GLY SER LYS ARG LEU PHE PHE TRP MET GLN GLU PRO LYS SEQRES 10 A 154 THR ASP GLN ASP GLU GLU HIS CYS ARG LYS VAL ASN GLU SEQRES 11 A 154 TYR LEU ASN ASN PRO PRO MET PRO GLY ALA LEU GLY ALA SEQRES 12 A 154 SER GLY SER SER GLY HIS GLU LEU SER ALA LEU SEQRES 1 B 18 GLY PRO GLY SER GLN GLU PRO GLU PRO PRO GLU PRO PHE SEQRES 2 B 18 GLU TYR ILE ASP ASP HELIX 1 AA1 GLN A 116 ASN A 130 1 15 SHEET 1 AA1 7 VAL A 69 ILE A 74 0 SHEET 2 AA1 7 ILE A 57 ASP A 63 -1 N PHE A 59 O LEU A 73 SHEET 3 AA1 7 GLY A 45 GLN A 51 -1 N GLN A 50 O HIS A 58 SHEET 4 AA1 7 LYS A 21 LYS A 34 -1 N PHE A 26 O VAL A 47 SHEET 5 AA1 7 ARG A 104 MET A 109 -1 O TRP A 108 N GLY A 29 SHEET 6 AA1 7 VAL A 93 PHE A 98 -1 N TYR A 94 O PHE A 107 SHEET 7 AA1 7 CYS A 80 ARG A 84 -1 N LYS A 83 O VAL A 95 SHEET 1 AA2 6 VAL A 69 ILE A 74 0 SHEET 2 AA2 6 ILE A 57 ASP A 63 -1 N PHE A 59 O LEU A 73 SHEET 3 AA2 6 GLY A 45 GLN A 51 -1 N GLN A 50 O HIS A 58 SHEET 4 AA2 6 LYS A 21 LYS A 34 -1 N PHE A 26 O VAL A 47 SHEET 5 AA2 6 THR A 37 PRO A 40 -1 O THR A 39 N SER A 32 SHEET 6 AA2 6 PHE B 948 GLU B 949 -1 O PHE B 948 N VAL A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1