HEADER LYASE 12-MAR-18 6COB TITLE ATHNL ENANTIOSELECTIVITY MUTANT AT-A9-H7 APO, Y13C,Y121L,P126F,L128W, TITLE 2 C131T,F179L,A209I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-HYDROXYNITRILE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATHNL; COMPND 5 SYNONYM: ATHNL,(R)-HYDROXYNITRILE LYASE,(R)-OXYNITRILASE, COMPND 6 METHYLESTERASE 5,ATMES5; COMPND 7 EC: 4.1.2.10; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: HNL, MES5, AT5G10300, F18D22_70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALPHA BETA HYDROLASE GLOBULAR HYDROXYNITRILE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.JONES,R.J.KAZLAUSKAS,R.DESROULEAUX REVDAT 4 04-OCT-23 6COB 1 REMARK REVDAT 3 25-DEC-19 6COB 1 REMARK REVDAT 2 10-APR-19 6COB 1 REMARK REVDAT 1 20-MAR-19 6COB 0 JRNL AUTH B.J.JONES,R.DESROULEAUX,R.J.KAZLAUSKAS JRNL TITL ATHNL ENANTIOSELECTIVITY MUTANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 46522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4366 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4156 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5914 ; 2.443 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9627 ; 1.226 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 544 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;34.515 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 785 ;15.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4910 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): -33.0105 2.6807 -3.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0548 REMARK 3 T33: 0.0116 T12: 0.0094 REMARK 3 T13: 0.0128 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.2344 L22: 0.7313 REMARK 3 L33: 0.9833 L12: -0.0359 REMARK 3 L13: -0.0313 L23: 0.3012 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: -0.2365 S13: -0.0871 REMARK 3 S21: 0.1294 S22: 0.0016 S23: 0.0352 REMARK 3 S31: 0.0869 S32: -0.0697 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6278 7.0764 -33.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0347 REMARK 3 T33: 0.0374 T12: -0.0013 REMARK 3 T13: 0.0172 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.2544 L22: 0.6533 REMARK 3 L33: 0.5187 L12: -0.1620 REMARK 3 L13: -0.1453 L23: -0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.1537 S13: 0.0269 REMARK 3 S21: -0.0814 S22: 0.0040 S23: -0.0653 REMARK 3 S31: -0.0040 S32: 0.0239 S33: -0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6COB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000223852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : SI (111) ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: PDBID 3DQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 17% PEG 3350, PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.99100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.67800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.67800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.99100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 259 REMARK 465 LEU A 260 REMARK 465 GLY B 259 REMARK 465 LEU B 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 57 O HOH B 401 2.02 REMARK 500 O HOH A 518 O HOH A 521 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 506 O HOH A 514 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 38 CD GLU A 38 OE1 -0.110 REMARK 500 ASP A 45 CB ASP A 45 CG 0.135 REMARK 500 GLU A 57 CD GLU A 57 OE1 0.069 REMARK 500 GLU A 57 CD GLU A 57 OE2 -0.070 REMARK 500 SER A 59 CB SER A 59 OG -0.098 REMARK 500 GLU A 73 CD GLU A 73 OE1 0.080 REMARK 500 SER A 136 CB SER A 136 OG -0.091 REMARK 500 GLU A 192 CD GLU A 192 OE1 0.083 REMARK 500 SER B 29 CB SER B 29 OG -0.094 REMARK 500 SER B 59 CB SER B 59 OG -0.080 REMARK 500 TYR B 167 CG TYR B 167 CD2 -0.084 REMARK 500 GLU B 182 CD GLU B 182 OE1 0.067 REMARK 500 GLU B 192 CG GLU B 192 CD 0.093 REMARK 500 GLU B 192 CD GLU B 192 OE1 0.077 REMARK 500 SER B 205 CB SER B 205 OG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 56 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 SER A 136 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 157 CG - CD - NE ANGL. DEV. = -16.0 DEGREES REMARK 500 CYS A 213 CB - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 47 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 92 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 MET B 144 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 175 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS B 213 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 LYS B 245 CD - CE - NZ ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 14 -4.93 77.83 REMARK 500 HIS A 15 -157.86 -116.37 REMARK 500 SER A 81 -124.95 59.55 REMARK 500 PHE A 223 96.81 -165.97 REMARK 500 CYS B 14 -7.36 73.73 REMARK 500 HIS B 15 -162.78 -117.99 REMARK 500 SER B 81 -118.39 64.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 DBREF 6COB A 1 258 UNP Q9LFT6 HNL_ARATH 1 258 DBREF 6COB B 1 258 UNP Q9LFT6 HNL_ARATH 1 258 SEQADV 6COB CYS A 14 UNP Q9LFT6 TYR 14 ENGINEERED MUTATION SEQADV 6COB LEU A 122 UNP Q9LFT6 TYR 122 ENGINEERED MUTATION SEQADV 6COB PHE A 126 UNP Q9LFT6 PRO 126 ENGINEERED MUTATION SEQADV 6COB TRP A 129 UNP Q9LFT6 LEU 129 ENGINEERED MUTATION SEQADV 6COB THR A 132 UNP Q9LFT6 CYS 132 ENGINEERED MUTATION SEQADV 6COB LEU A 179 UNP Q9LFT6 PHE 179 ENGINEERED MUTATION SEQADV 6COB ILE A 210 UNP Q9LFT6 ALA 210 ENGINEERED MUTATION SEQADV 6COB GLY A 259 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COB LEU A 260 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COB CYS B 14 UNP Q9LFT6 TYR 14 ENGINEERED MUTATION SEQADV 6COB LEU B 122 UNP Q9LFT6 TYR 122 ENGINEERED MUTATION SEQADV 6COB PHE B 126 UNP Q9LFT6 PRO 126 ENGINEERED MUTATION SEQADV 6COB TRP B 129 UNP Q9LFT6 LEU 129 ENGINEERED MUTATION SEQADV 6COB THR B 132 UNP Q9LFT6 CYS 132 ENGINEERED MUTATION SEQADV 6COB LEU B 179 UNP Q9LFT6 PHE 179 ENGINEERED MUTATION SEQADV 6COB ILE B 210 UNP Q9LFT6 ALA 210 ENGINEERED MUTATION SEQADV 6COB GLY B 259 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COB LEU B 260 UNP Q9LFT6 EXPRESSION TAG SEQRES 1 A 260 MET GLU ARG LYS HIS HIS PHE VAL LEU VAL HIS ASN ALA SEQRES 2 A 260 CYS HIS GLY ALA TRP ILE TRP TYR LYS LEU LYS PRO LEU SEQRES 3 A 260 LEU GLU SER ALA GLY HIS ARG VAL THR ALA VAL GLU LEU SEQRES 4 A 260 ALA ALA SER GLY ILE ASP PRO ARG PRO ILE GLN ALA VAL SEQRES 5 A 260 GLU THR VAL ASP GLU TYR SER LYS PRO LEU ILE GLU THR SEQRES 6 A 260 LEU LYS SER LEU PRO GLU ASN GLU GLU VAL ILE LEU VAL SEQRES 7 A 260 GLY PHE SER PHE GLY GLY ILE ASN ILE ALA LEU ALA ALA SEQRES 8 A 260 ASP ILE PHE PRO ALA LYS ILE LYS VAL LEU VAL PHE LEU SEQRES 9 A 260 ASN ALA PHE LEU PRO ASP THR THR HIS VAL PRO SER HIS SEQRES 10 A 260 VAL LEU ASP LYS LEU MET GLU MET PHE GLY GLY TRP GLY SEQRES 11 A 260 ASP THR GLU PHE SER SER HIS GLU THR ARG ASN GLY THR SEQRES 12 A 260 MET SER LEU LEU LYS MET GLY PRO LYS PHE MET LYS ALA SEQRES 13 A 260 ARG LEU TYR GLN ASN CYS PRO ILE GLU ASP TYR GLU LEU SEQRES 14 A 260 ALA LYS MET LEU HIS ARG GLN GLY SER LEU PHE THR GLU SEQRES 15 A 260 ASP LEU SER LYS LYS GLU LYS PHE SER GLU GLU GLY TYR SEQRES 16 A 260 GLY SER VAL GLN ARG VAL TYR VAL MET SER SER GLU ASP SEQRES 17 A 260 LYS ILE ILE PRO CYS ASP PHE ILE ARG TRP MET ILE ASP SEQRES 18 A 260 ASN PHE ASN VAL SER LYS VAL TYR GLU ILE ASP GLY GLY SEQRES 19 A 260 ASP HIS MET VAL MET LEU SER LYS PRO GLN LYS LEU PHE SEQRES 20 A 260 ASP SER LEU SER ALA ILE ALA THR ASP TYR MET GLY LEU SEQRES 1 B 260 MET GLU ARG LYS HIS HIS PHE VAL LEU VAL HIS ASN ALA SEQRES 2 B 260 CYS HIS GLY ALA TRP ILE TRP TYR LYS LEU LYS PRO LEU SEQRES 3 B 260 LEU GLU SER ALA GLY HIS ARG VAL THR ALA VAL GLU LEU SEQRES 4 B 260 ALA ALA SER GLY ILE ASP PRO ARG PRO ILE GLN ALA VAL SEQRES 5 B 260 GLU THR VAL ASP GLU TYR SER LYS PRO LEU ILE GLU THR SEQRES 6 B 260 LEU LYS SER LEU PRO GLU ASN GLU GLU VAL ILE LEU VAL SEQRES 7 B 260 GLY PHE SER PHE GLY GLY ILE ASN ILE ALA LEU ALA ALA SEQRES 8 B 260 ASP ILE PHE PRO ALA LYS ILE LYS VAL LEU VAL PHE LEU SEQRES 9 B 260 ASN ALA PHE LEU PRO ASP THR THR HIS VAL PRO SER HIS SEQRES 10 B 260 VAL LEU ASP LYS LEU MET GLU MET PHE GLY GLY TRP GLY SEQRES 11 B 260 ASP THR GLU PHE SER SER HIS GLU THR ARG ASN GLY THR SEQRES 12 B 260 MET SER LEU LEU LYS MET GLY PRO LYS PHE MET LYS ALA SEQRES 13 B 260 ARG LEU TYR GLN ASN CYS PRO ILE GLU ASP TYR GLU LEU SEQRES 14 B 260 ALA LYS MET LEU HIS ARG GLN GLY SER LEU PHE THR GLU SEQRES 15 B 260 ASP LEU SER LYS LYS GLU LYS PHE SER GLU GLU GLY TYR SEQRES 16 B 260 GLY SER VAL GLN ARG VAL TYR VAL MET SER SER GLU ASP SEQRES 17 B 260 LYS ILE ILE PRO CYS ASP PHE ILE ARG TRP MET ILE ASP SEQRES 18 B 260 ASN PHE ASN VAL SER LYS VAL TYR GLU ILE ASP GLY GLY SEQRES 19 B 260 ASP HIS MET VAL MET LEU SER LYS PRO GLN LYS LEU PHE SEQRES 20 B 260 ASP SER LEU SER ALA ILE ALA THR ASP TYR MET GLY LEU HET CL A 301 1 HET GOL A 302 6 HET CL B 301 1 HET GOL B 302 6 HET GOL B 303 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *245(H2 O) HELIX 1 AA1 GLY A 16 TYR A 21 5 6 HELIX 2 AA2 LYS A 22 ALA A 30 1 9 HELIX 3 AA3 PRO A 48 VAL A 52 5 5 HELIX 4 AA4 THR A 54 SER A 68 1 15 HELIX 5 AA5 PHE A 82 PHE A 94 1 13 HELIX 6 AA6 SER A 116 PHE A 126 1 11 HELIX 7 AA7 GLY A 150 LEU A 158 1 9 HELIX 8 AA8 PRO A 163 HIS A 174 1 12 HELIX 9 AA9 PHE A 180 LYS A 186 1 7 HELIX 10 AB1 GLY A 194 VAL A 198 5 5 HELIX 11 AB2 PRO A 212 PHE A 223 1 12 HELIX 12 AB3 MET A 237 LYS A 242 1 6 HELIX 13 AB4 LYS A 242 TYR A 257 1 16 HELIX 14 AB5 GLY B 16 TYR B 21 5 6 HELIX 15 AB6 LYS B 22 ALA B 30 1 9 HELIX 16 AB7 PRO B 48 VAL B 52 5 5 HELIX 17 AB8 THR B 54 LEU B 69 1 16 HELIX 18 AB9 PHE B 82 ASP B 92 1 11 HELIX 19 AC1 PHE B 94 ALA B 96 5 3 HELIX 20 AC2 SER B 116 PHE B 126 1 11 HELIX 21 AC3 GLY B 150 LEU B 158 1 9 HELIX 22 AC4 PRO B 163 HIS B 174 1 12 HELIX 23 AC5 PHE B 180 LYS B 187 1 8 HELIX 24 AC6 GLY B 194 VAL B 198 5 5 HELIX 25 AC7 PRO B 212 PHE B 223 1 12 HELIX 26 AC8 MET B 237 LYS B 242 1 6 HELIX 27 AC9 LYS B 242 TYR B 257 1 16 SHEET 1 AA1 6 ARG A 33 VAL A 37 0 SHEET 2 AA1 6 HIS A 6 VAL A 10 1 N PHE A 7 O ARG A 33 SHEET 3 AA1 6 VAL A 75 PHE A 80 1 O VAL A 78 N VAL A 8 SHEET 4 AA1 6 ILE A 98 LEU A 104 1 O VAL A 102 N LEU A 77 SHEET 5 AA1 6 ARG A 200 SER A 205 1 O VAL A 203 N PHE A 103 SHEET 6 AA1 6 VAL A 228 ILE A 231 1 O TYR A 229 N MET A 204 SHEET 1 AA2 2 GLU A 133 THR A 139 0 SHEET 2 AA2 2 GLY A 142 LYS A 148 -1 O LEU A 146 N SER A 135 SHEET 1 AA3 6 ARG B 33 ALA B 36 0 SHEET 2 AA3 6 HIS B 6 VAL B 10 1 N PHE B 7 O ARG B 33 SHEET 3 AA3 6 VAL B 75 PHE B 80 1 O VAL B 78 N VAL B 8 SHEET 4 AA3 6 ILE B 98 LEU B 104 1 O VAL B 102 N LEU B 77 SHEET 5 AA3 6 ARG B 200 SER B 205 1 O VAL B 203 N PHE B 103 SHEET 6 AA3 6 VAL B 228 ILE B 231 1 O TYR B 229 N MET B 204 SHEET 1 AA4 2 GLU B 133 THR B 139 0 SHEET 2 AA4 2 GLY B 142 LYS B 148 -1 O LEU B 146 N SER B 135 SITE 1 AC1 4 ASN A 12 ALA A 13 SER A 81 PHE A 82 SITE 1 AC2 8 GLU A 53 ASN A 141 THR A 143 MET A 144 SITE 2 AC2 8 ASP A 183 LYS A 186 HOH A 407 HOH A 435 SITE 1 AC3 6 ASN B 12 ALA B 13 SER B 81 PHE B 82 SITE 2 AC3 6 GOL B 303 HOH B 423 SITE 1 AC4 7 GLU B 53 THR B 139 ARG B 140 ASN B 161 SITE 2 AC4 7 GLY B 233 LYS B 242 HOH B 402 SITE 1 AC5 3 ALA B 13 CL B 301 HOH B 423 CRYST1 49.982 87.110 123.356 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008107 0.00000