HEADER LIGASE 13-MAR-18 6CP0 TITLE SDCA IN COMPLEX WITH THE E2, UBCH5C COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDCA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME D3,E2 COMPND 10 UBIQUITIN-CONJUGATING ENZYME D3,UBIQUITIN CARRIER PROTEIN D3, COMPND 11 UBIQUITIN-CONJUGATING ENZYME E2(17)KB 3,UBIQUITIN-CONJUGATING ENZYME COMPND 12 E2-17 KDA 3,UBIQUITIN-PROTEIN LIGASE D3; COMPND 13 EC: 2.3.2.23,2.3.2.24; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBE2D3, UBC5C, UBCH5C; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, BACTERIAL E3 LIGASE, E2, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.WASILKO,Q.HUANG,Y.MAO REVDAT 4 04-OCT-23 6CP0 1 REMARK REVDAT 3 01-JAN-20 6CP0 1 REMARK REVDAT 2 20-FEB-19 6CP0 1 REMARK REVDAT 1 01-AUG-18 6CP0 0 JRNL AUTH D.J.WASILKO,Q.HUANG,Y.MAO JRNL TITL INSIGHTS INTO THE UBIQUITIN TRANSFER CASCADE CATALYZED BY JRNL TITL 2 THELEGIONELLAEFFECTOR SIDC. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30015617 JRNL DOI 10.7554/ELIFE.36154 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 21100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.45000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.408 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5470 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5203 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7381 ; 1.468 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12053 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 657 ; 6.652 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;37.096 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1005 ;17.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6142 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1223 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2636 ; 3.778 ; 6.397 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2635 ; 3.777 ; 6.396 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3290 ; 6.125 ; 9.585 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3291 ; 6.125 ; 9.585 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2832 ; 3.801 ; 6.781 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2832 ; 3.800 ; 6.781 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4089 ; 6.284 ;10.031 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6354 ; 9.225 ;50.542 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6355 ; 9.225 ;50.546 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 523 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0487 33.8949 49.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.0653 REMARK 3 T33: 0.0142 T12: 0.0362 REMARK 3 T13: -0.0057 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.3736 L22: 0.4417 REMARK 3 L33: 0.1691 L12: -0.1595 REMARK 3 L13: -0.1248 L23: 0.2638 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0855 S13: -0.0473 REMARK 3 S21: 0.1699 S22: -0.0255 S23: -0.0123 REMARK 3 S31: 0.0586 S32: -0.0155 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3036 -28.7656 29.8976 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.1245 REMARK 3 T33: 0.2095 T12: 0.0613 REMARK 3 T13: -0.1434 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.0888 L22: 3.5853 REMARK 3 L33: 1.3654 L12: 0.4843 REMARK 3 L13: 0.1213 L23: 1.5876 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0604 S13: 0.0343 REMARK 3 S21: 0.2604 S22: 0.3422 S23: -0.2197 REMARK 3 S31: 0.1387 S32: -0.0416 S33: -0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6309 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4TRG REMARK 200 REMARK 200 REMARK: SMALL, PLATE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 3% GLYCEROL, REMARK 280 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.16900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.16900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.10150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.10150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.16900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.77500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.10150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.16900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.77500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.10150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 316 REMARK 465 SER A 317 REMARK 465 GLU A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 THR A 321 REMARK 465 GLU A 322 REMARK 465 ALA A 524 REMARK 465 GLU A 525 REMARK 465 SER A 526 REMARK 465 LYS A 527 REMARK 465 PRO A 528 REMARK 465 LYS A 529 REMARK 465 GLU A 530 REMARK 465 LEU A 531 REMARK 465 LEU A 532 REMARK 465 ASP A 533 REMARK 465 TYR A 534 REMARK 465 LEU A 535 REMARK 465 VAL A 536 REMARK 465 ALA A 537 REMARK 465 THR A 538 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -75.85 -115.09 REMARK 500 THR A 44 -127.04 59.51 REMARK 500 THR A 63 27.11 86.15 REMARK 500 ARG A 128 14.55 85.68 REMARK 500 HIS A 274 4.46 82.53 REMARK 500 ASP A 290 -156.36 -163.06 REMARK 500 VAL A 326 -6.48 -54.12 REMARK 500 LYS A 335 -62.72 -90.59 REMARK 500 SER A 417 155.38 -48.84 REMARK 500 ASP A 450 32.20 -91.69 REMARK 500 LYS A 516 -35.94 -36.45 REMARK 500 ARG B 90 -88.27 -107.48 REMARK 500 ALA B 96 -32.09 -38.91 REMARK 500 ASP B 112 43.79 -149.75 REMARK 500 ASP B 117 54.28 -114.76 REMARK 500 ASP B 130 89.45 -158.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CP0 A 1 538 UNP Q6RCR3 Q6RCR3_LEGPN 1 538 DBREF 6CP0 B 1 147 UNP P61077 UB2D3_HUMAN 1 147 SEQADV 6CP0 ALA A 45 UNP Q6RCR3 CYS 45 ENGINEERED MUTATION SEQADV 6CP0 LEU B -1 UNP P61077 EXPRESSION TAG SEQADV 6CP0 ALA B 0 UNP P61077 EXPRESSION TAG SEQADV 6CP0 SER B 85 UNP P61077 CYS 85 ENGINEERED MUTATION SEQRES 1 A 538 MET MET ASN MET VAL ASP LYS ILE LYS PHE LYS GLU PRO SEQRES 2 A 538 GLU ARG CYS GLU TYR LEU HIS ILE ALA LYS ASP ASN LYS SEQRES 3 A 538 VAL HIS ILE LEU LEU PRO ILE VAL GLY GLY ASP GLU ILE SEQRES 4 A 538 GLY LEU ASP ASN THR ALA GLU THR THR GLY GLU LEU LEU SEQRES 5 A 538 THR PHE PHE TYR GLY LYS THR HIS GLY GLY THR LYS TYR SEQRES 6 A 538 SER ALA GLU HIS HIS LEU ASN GLU TYR LYS LYS ASN LEU SEQRES 7 A 538 GLU ASP ASP ILE LYS ALA ILE GLY VAL GLN ARG LYS ILE SEQRES 8 A 538 SER PRO ASN ALA TYR GLU ASP LEU LEU LYS GLU LYS LYS SEQRES 9 A 538 GLU ARG LEU GLU GLN ILE GLU LYS TYR ILE ASP LEU ILE SEQRES 10 A 538 LYS VAL LEU LYS GLU LYS PHE ASP GLU GLN ARG GLU ILE SEQRES 11 A 538 ASP LYS LEU ARG THR GLU GLY ILE PRO GLN LEU PRO SER SEQRES 12 A 538 GLY VAL LYS GLU VAL ILE LYS SER SER GLU ASN ALA PHE SEQRES 13 A 538 ALA LEU ARG LEU SER PRO ASP ARG PRO ASP SER PHE THR SEQRES 14 A 538 ARG PHE ASP ASP PRO LEU PHE SER LEU LYS ARG ASN ARG SEQRES 15 A 538 SER GLN TYR GLU ALA GLY GLY TYR GLN ARG ALA THR ASP SEQRES 16 A 538 GLY LEU GLY ALA ARG LEU ARG SER GLU LEU LEU PRO PRO SEQRES 17 A 538 ASP LYS ASP THR PRO ILE VAL PHE ASN LYS LYS SER LEU SEQRES 18 A 538 LYS ASP LYS ILE VAL ASP SER VAL LEU VAL GLN LEU ASP SEQRES 19 A 538 LYS ASP PHE ASN THR LYS ASP GLY ASP ARG GLY GLN LYS SEQRES 20 A 538 PHE GLU ASP ILE LYS LYS LEU VAL LEU GLU GLU TYR LYS SEQRES 21 A 538 LYS ILE ASP SER GLU LEU GLN VAL ASP GLU ASP THR TYR SEQRES 22 A 538 HIS GLN PRO LEU ASN LEU ASP TYR LEU GLU ASN ILE ALA SEQRES 23 A 538 CYS THR LEU ASP ASP ASN SER THR ALA LYS ASP TRP VAL SEQRES 24 A 538 TYR GLY ILE ILE GLY ALA THR THR GLU ALA ASP TYR TRP SEQRES 25 A 538 PRO LYS LYS GLU SER GLU SER GLY THR GLU LYS VAL SER SEQRES 26 A 538 VAL PHE TYR GLU LYS GLN LYS GLU ILE LYS PHE GLU SER SEQRES 27 A 538 ASP THR ASN THR MET SER ILE LYS VAL GLN TYR LEU LEU SEQRES 28 A 538 ALA GLU ILE ASN PHE TYR CYS LYS THR ASN LYS LEU SER SEQRES 29 A 538 ASP ALA ASN PHE GLY GLU PHE PHE ASP LYS GLU PRO HIS SEQRES 30 A 538 ALA THR GLU VAL ALA LYS ARG VAL LYS GLU GLY LEU VAL SEQRES 31 A 538 GLN GLY ALA GLU ILE GLU PRO ILE ILE TYR ASN TYR ILE SEQRES 32 A 538 ASN SER HIS HIS ALA GLU LEU GLY LEU THR SER GLU LEU SEQRES 33 A 538 SER SER LYS GLN GLN GLU GLU ILE THR GLU LYS PHE THR SEQRES 34 A 538 GLN ARG TYR HIS ILE ILE GLU ASN SER PRO HIS PHE ASP SEQRES 35 A 538 GLU PHE PHE VAL ALA ASP PRO ASP LYS LYS GLY ASN ILE SEQRES 36 A 538 PHE SER HIS GLN GLY ARG MET SER CYS HIS PHE LEU ASP SEQRES 37 A 538 PHE PHE ALA ARG GLN THR LYS GLY LYS TYR PRO LEU GLY SEQRES 38 A 538 ASP LEU ALA GLY HIS GLN GLU ALA LEU GLN ALA GLY THR SEQRES 39 A 538 SER ASN ARG LEU HIS HIS LYS ASN GLU VAL VAL ALA GLN SEQRES 40 A 538 GLY TYR GLU LYS PHE ASP GLN PHE LYS LYS GLU VAL VAL SEQRES 41 A 538 LYS LEU LEU ALA GLU SER LYS PRO LYS GLU LEU LEU ASP SEQRES 42 A 538 TYR LEU VAL ALA THR SEQRES 1 B 149 LEU ALA MET ALA LEU LYS ARG ILE ASN LYS GLU LEU SER SEQRES 2 B 149 ASP LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY SEQRES 3 B 149 PRO VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE SEQRES 4 B 149 MET GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE SEQRES 5 B 149 PHE LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS SEQRES 6 B 149 PRO PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO SEQRES 7 B 149 ASN ILE ASN SER ASN GLY SER ILE SER LEU ASP ILE LEU SEQRES 8 B 149 ARG SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL SEQRES 9 B 149 LEU LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO SEQRES 10 B 149 ASP ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS SEQRES 11 B 149 THR ASP ARG ASP LYS TYR ASN ARG ILE SER ARG GLU TRP SEQRES 12 B 149 THR GLN LYS TYR ALA MET FORMUL 3 HOH *28(H2 O) HELIX 1 AA1 ASN A 43 THR A 47 5 5 HELIX 2 AA2 THR A 48 GLY A 57 1 10 HELIX 3 AA3 SER A 66 SER A 92 1 27 HELIX 4 AA4 TYR A 96 PHE A 124 1 29 HELIX 5 AA5 ARG A 128 GLU A 136 1 9 HELIX 6 AA6 PRO A 142 SER A 152 1 11 HELIX 7 AA7 GLY A 196 LEU A 206 1 11 HELIX 8 AA8 SER A 220 VAL A 231 1 12 HELIX 9 AA9 ASP A 243 ASP A 263 1 21 HELIX 10 AB1 ASN A 278 ILE A 285 1 8 HELIX 11 AB2 THR A 294 THR A 307 1 14 HELIX 12 AB3 PHE A 336 ASN A 361 1 26 HELIX 13 AB4 ASN A 367 ASP A 373 1 7 HELIX 14 AB5 LYS A 374 GLY A 392 1 19 HELIX 15 AB6 GLU A 394 HIS A 407 1 14 HELIX 16 AB7 SER A 417 GLU A 436 1 20 HELIX 17 AB8 PHE A 466 THR A 474 1 9 HELIX 18 AB9 LEU A 480 ALA A 484 5 5 HELIX 19 AC1 GLY A 485 ALA A 492 1 8 HELIX 20 AC2 ASN A 502 GLN A 507 1 6 HELIX 21 AC3 GLY A 508 LYS A 521 1 14 HELIX 22 AC4 ALA B 0 ASP B 16 1 17 HELIX 23 AC5 LEU B 86 ARG B 90 5 5 HELIX 24 AC6 THR B 98 ASP B 112 1 15 HELIX 25 AC7 VAL B 120 ASP B 130 1 11 HELIX 26 AC8 ASP B 130 ALA B 146 1 17 SHEET 1 AA1 4 LEU A 19 ILE A 21 0 SHEET 2 AA1 4 VAL A 27 GLY A 35 -1 O HIS A 28 N HIS A 20 SHEET 3 AA1 4 ARG A 461 HIS A 465 -1 O MET A 462 N VAL A 34 SHEET 4 AA1 4 PHE A 456 HIS A 458 -1 N PHE A 456 O SER A 463 SHEET 1 AA2 3 PRO A 174 SER A 177 0 SHEET 2 AA2 3 ALA A 155 ARG A 159 1 N ALA A 157 O LEU A 175 SHEET 3 AA2 3 GLU A 443 ALA A 447 -1 O PHE A 444 N LEU A 158 SHEET 1 AA3 2 ILE A 214 VAL A 215 0 SHEET 2 AA3 2 GLU A 333 ILE A 334 -1 O ILE A 334 N ILE A 214 SHEET 1 AA4 4 CYS B 21 PRO B 25 0 SHEET 2 AA4 4 HIS B 32 MET B 38 -1 O GLN B 34 N GLY B 24 SHEET 3 AA4 4 VAL B 49 HIS B 55 -1 O LEU B 52 N ALA B 35 SHEET 4 AA4 4 LYS B 66 PHE B 69 -1 O LYS B 66 N HIS B 55 CISPEP 1 TYR B 60 PRO B 61 0 3.51 CRYST1 135.550 142.203 118.338 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008450 0.00000