HEADER LIGASE 13-MAR-18 6CP2 TITLE SIDC IN COMPLEX WITH UBCH7~UB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 L3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME L3,L-UBC,UBCH7,UBIQUITIN COMPND 10 CARRIER PROTEIN L3,UBIQUITIN-CONJUGATING ENZYME E2-F1,UBIQUITIN- COMPND 11 PROTEIN LIGASE L3; COMPND 12 EC: 2.3.2.23; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: POLYUBIQUITIN-B; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBE2L3, UBCE7, UBCH7; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: UBB; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL E3 LIGASE, E2, UBIQUITIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.WASILKO,Q.HUANG,Y.MAO REVDAT 4 04-OCT-23 6CP2 1 REMARK REVDAT 3 01-JAN-20 6CP2 1 REMARK REVDAT 2 20-FEB-19 6CP2 1 REMARK REVDAT 1 01-AUG-18 6CP2 0 JRNL AUTH D.J.WASILKO,Q.HUANG,Y.MAO JRNL TITL INSIGHTS INTO THE UBIQUITIN TRANSFER CASCADE CATALYZED BY JRNL TITL 2 THELEGIONELLAEFFECTOR SIDC. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30015617 JRNL DOI 10.7554/ELIFE.36154 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1664 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.969 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6049 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5819 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8162 ; 1.478 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13482 ; 0.791 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 730 ; 6.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;38.842 ;25.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1135 ;18.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.652 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6787 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1321 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2929 ; 3.313 ; 5.073 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2928 ; 3.313 ; 5.073 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3656 ; 5.374 ; 7.600 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3657 ; 5.373 ; 7.601 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3119 ; 3.226 ; 5.381 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3120 ; 3.226 ; 5.381 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4507 ; 5.446 ; 7.913 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6871 ; 8.142 ;39.279 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6872 ; 8.142 ;39.282 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1761 42.4372 35.4749 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1215 REMARK 3 T33: 0.1328 T12: -0.0908 REMARK 3 T13: 0.0671 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 0.2968 L22: 0.1137 REMARK 3 L33: 1.1251 L12: 0.1638 REMARK 3 L13: 0.2579 L23: 0.2145 REMARK 3 S TENSOR REMARK 3 S11: -0.2445 S12: 0.0608 S13: -0.1166 REMARK 3 S21: -0.1551 S22: 0.0867 S23: -0.0281 REMARK 3 S31: -0.2761 S32: 0.1931 S33: 0.1579 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -41.2412 31.5344 40.7256 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0555 REMARK 3 T33: 0.1139 T12: -0.0275 REMARK 3 T13: -0.0161 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.4679 L22: 3.4346 REMARK 3 L33: 1.5551 L12: 0.0439 REMARK 3 L13: 0.7529 L23: -1.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.0138 S13: 0.0035 REMARK 3 S21: 0.1818 S22: -0.0134 S23: 0.0525 REMARK 3 S31: 0.0004 S32: 0.0206 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 76 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0650 35.7333 17.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.3272 REMARK 3 T33: 0.0559 T12: -0.0711 REMARK 3 T13: -0.0078 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 4.4364 L22: 1.3759 REMARK 3 L33: 3.0968 L12: -2.4517 REMARK 3 L13: 0.1057 L23: 0.1854 REMARK 3 S TENSOR REMARK 3 S11: 0.2521 S12: 0.6362 S13: -0.4447 REMARK 3 S21: -0.1318 S22: -0.2999 S23: 0.2465 REMARK 3 S31: 0.0157 S32: 0.4819 S33: 0.0478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4TRG REMARK 200 REMARK 200 REMARK: HEXAGONAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3000, 0.1 M TRIS PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 234.88400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.44200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 176.16300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.72100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 293.60500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 234.88400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 117.44200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.72100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 176.16300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 293.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 510 REMARK 465 GLN A 511 REMARK 465 GLY A 512 REMARK 465 TYR A 513 REMARK 465 GLU A 514 REMARK 465 LYS A 515 REMARK 465 LEU A 516 REMARK 465 ASP A 517 REMARK 465 GLN A 518 REMARK 465 PHE A 519 REMARK 465 LYS A 520 REMARK 465 LYS A 521 REMARK 465 GLU A 522 REMARK 465 VAL A 523 REMARK 465 VAL A 524 REMARK 465 LYS A 525 REMARK 465 LEU A 526 REMARK 465 LEU A 527 REMARK 465 ALA A 528 REMARK 465 GLU A 529 REMARK 465 ASN A 530 REMARK 465 LYS A 531 REMARK 465 PRO A 532 REMARK 465 LYS A 533 REMARK 465 GLU A 534 REMARK 465 LEU A 535 REMARK 465 LEU A 536 REMARK 465 ASP A 537 REMARK 465 TYR A 538 REMARK 465 LEU A 539 REMARK 465 VAL A 540 REMARK 465 ALA A 541 REMARK 465 THR A 542 REMARK 465 ASP B 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 380 C - N - CD ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO B 62 C - N - CD ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 -38.74 -39.83 REMARK 500 ASP A 38 -60.79 -123.26 REMARK 500 THR A 45 -128.70 47.40 REMARK 500 HIS A 96 -0.59 85.66 REMARK 500 ASP A 100 6.10 83.63 REMARK 500 ARG A 192 19.41 49.99 REMARK 500 ASP A 244 -171.98 -175.09 REMARK 500 PRO A 419 164.19 -49.65 REMARK 500 CYS B 17 -78.62 -118.52 REMARK 500 PRO B 117 64.18 -69.22 REMARK 500 GLU B 118 -53.24 -126.49 REMARK 500 PRO B 120 154.92 -48.18 REMARK 500 GLU C 24 -37.15 -30.68 REMARK 500 ASN C 60 42.24 71.90 REMARK 500 LYS C 63 72.56 49.93 REMARK 500 GLU C 64 22.70 83.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CP2 A 1 542 UNP Q6RCR4 Q6RCR4_LEGPN 1 542 DBREF 6CP2 B 1 154 UNP P68036 UB2L3_HUMAN 1 154 DBREF 6CP2 C -1 76 UNP P0CG47 UBB_HUMAN 75 152 SEQADV 6CP2 ALA A 46 UNP Q6RCR4 CYS 46 ENGINEERED MUTATION SEQADV 6CP2 LYS B 86 UNP P68036 CYS 86 ENGINEERED MUTATION SEQADV 6CP2 SER C 0 UNP P0CG47 GLY 76 CONFLICT SEQRES 1 A 542 MET VAL ILE ASN MET VAL ASP VAL ILE LYS PHE LYS GLU SEQRES 2 A 542 PRO GLU ARG CYS ASP TYR LEU TYR VAL ASP GLU ASN ASN SEQRES 3 A 542 LYS VAL HIS ILE LEU LEU PRO ILE VAL GLY GLY ASP GLU SEQRES 4 A 542 ILE GLY LEU ASP ASN THR ALA GLN THR ALA VAL GLU LEU SEQRES 5 A 542 ILE THR PHE PHE TYR GLY SER ALA HIS SER GLY VAL THR SEQRES 6 A 542 LYS TYR SER ALA GLU HIS GLN LEU SER GLU TYR LYS ARG SEQRES 7 A 542 GLN LEU GLU GLU ASP ILE LYS ALA ILE ASN SER GLN LYS SEQRES 8 A 542 LYS ILE SER PRO HIS ALA TYR ASP ASP LEU LEU LYS GLU SEQRES 9 A 542 LYS ILE GLU ARG LEU GLN GLN ILE GLU LYS TYR ILE GLU SEQRES 10 A 542 LEU ILE GLN VAL LEU LYS LYS GLN TYR ASP GLU GLN ASN SEQRES 11 A 542 ASP ILE ARG GLN LEU ARG THR GLY GLY ILE PRO GLN LEU SEQRES 12 A 542 PRO SER GLY VAL LYS GLU ILE ILE LYS SER SER GLU ASN SEQRES 13 A 542 ALA PHE ALA VAL ARG LEU SER PRO TYR ASP ASN ASP LYS SEQRES 14 A 542 PHE THR ARG PHE ASP ASP PRO LEU PHE ASN VAL LYS ARG SEQRES 15 A 542 ASN ILE SER LYS TYR ASP THR PRO SER ARG GLN ALA PRO SEQRES 16 A 542 ILE PRO ILE TYR GLU GLY LEU GLY TYR ARG LEU ARG SER SEQRES 17 A 542 THR LEU PHE PRO GLU ASP LYS THR PRO THR PRO ILE ASN SEQRES 18 A 542 LYS LYS SER LEU ARG ASP LYS VAL LYS SER THR VAL LEU SEQRES 19 A 542 SER HIS TYR LYS ASP GLU ASP ARG ILE ASP GLY GLU LYS SEQRES 20 A 542 LYS ASP GLU LYS LEU ASN GLU LEU ILE THR ASN LEU GLN SEQRES 21 A 542 ASN GLU LEU VAL LYS GLU LEU VAL LYS SER ASP PRO GLN SEQRES 22 A 542 TYR SER LYS LEU SER LEU SER LYS ASP PRO ARG GLY LYS SEQRES 23 A 542 GLU ILE ASN TYR ASP TYR LEU VAL ASN SER LEU MET LEU SEQRES 24 A 542 VAL ASP ASN ASP SER GLU ILE GLY ASP TRP ILE ASP THR SEQRES 25 A 542 ILE LEU ASP ALA THR VAL ASP SER THR VAL TRP VAL ALA SEQRES 26 A 542 GLN ALA SER SER PRO PHE TYR ASP GLY ALA LYS GLU ILE SEQRES 27 A 542 SER SER ASP ARG ASP ALA ASP LYS ILE SER ILE ARG VAL SEQRES 28 A 542 GLN TYR LEU LEU ALA GLU ALA ASN ILE TYR CYS LYS THR SEQRES 29 A 542 ASN LYS LEU SER ASP ALA ASN PHE GLY GLU PHE PHE ASP SEQRES 30 A 542 LYS GLU PRO HIS ALA THR GLU ILE ALA LYS ARG VAL LYS SEQRES 31 A 542 GLU GLY PHE THR GLN GLY ALA ASP ILE GLU PRO ILE ILE SEQRES 32 A 542 TYR ASP TYR ILE ASN SER ASN HIS ALA GLU LEU GLY LEU SEQRES 33 A 542 LYS SER PRO LEU THR GLY LYS GLN GLN GLN GLU ILE THR SEQRES 34 A 542 ASP LYS PHE THR LYS HIS TYR ASN THR ILE LYS GLU SER SEQRES 35 A 542 PRO HIS PHE ASP GLU PHE PHE VAL ALA ASP PRO ASP LYS SEQRES 36 A 542 LYS GLY ASN ILE PHE SER HIS GLN GLY ARG ILE SER CYS SEQRES 37 A 542 HIS PHE LEU ASP PHE PHE THR ARG GLN THR LYS GLY LYS SEQRES 38 A 542 HIS PRO LEU GLY ASP LEU ALA SER HIS GLN GLU ALA LEU SEQRES 39 A 542 GLN GLU GLY THR SER ASN ARG LEU HIS HIS LYS ASN GLU SEQRES 40 A 542 VAL VAL ALA GLN GLY TYR GLU LYS LEU ASP GLN PHE LYS SEQRES 41 A 542 LYS GLU VAL VAL LYS LEU LEU ALA GLU ASN LYS PRO LYS SEQRES 42 A 542 GLU LEU LEU ASP TYR LEU VAL ALA THR SEQRES 1 B 154 MET ALA ALA SER ARG ARG LEU MET LYS GLU LEU GLU GLU SEQRES 2 B 154 ILE ARG LYS CYS GLY MET LYS ASN PHE ARG ASN ILE GLN SEQRES 3 B 154 VAL ASP GLU ALA ASN LEU LEU THR TRP GLN GLY LEU ILE SEQRES 4 B 154 VAL PRO ASP ASN PRO PRO TYR ASP LYS GLY ALA PHE ARG SEQRES 5 B 154 ILE GLU ILE ASN PHE PRO ALA GLU TYR PRO PHE LYS PRO SEQRES 6 B 154 PRO LYS ILE THR PHE LYS THR LYS ILE TYR HIS PRO ASN SEQRES 7 B 154 ILE ASP GLU LYS GLY GLN VAL LYS LEU PRO VAL ILE SER SEQRES 8 B 154 ALA GLU ASN TRP LYS PRO ALA THR LYS THR ASP GLN VAL SEQRES 9 B 154 ILE GLN SER LEU ILE ALA LEU VAL ASN ASP PRO GLN PRO SEQRES 10 B 154 GLU HIS PRO LEU ARG ALA ASP LEU ALA GLU GLU TYR SER SEQRES 11 B 154 LYS ASP ARG LYS LYS PHE CYS LYS ASN ALA GLU GLU PHE SEQRES 12 B 154 THR LYS LYS TYR GLY GLU LYS ARG PRO VAL ASP SEQRES 1 C 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 C 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 C 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY FORMUL 4 HOH *29(H2 O) HELIX 1 AA1 ALA A 49 GLY A 58 1 10 HELIX 2 AA2 SER A 68 SER A 89 1 22 HELIX 3 AA3 ASP A 100 GLN A 125 1 26 HELIX 4 AA4 PRO A 144 SER A 153 1 10 HELIX 5 AA5 SER A 185 THR A 189 5 5 HELIX 6 AA6 GLY A 201 PHE A 211 1 11 HELIX 7 AA7 SER A 224 SER A 235 1 12 HELIX 8 AA8 LYS A 247 LYS A 269 1 23 HELIX 9 AA9 ASP A 271 LEU A 277 5 7 HELIX 10 AB1 ASN A 289 ASN A 295 1 7 HELIX 11 AB2 GLU A 305 VAL A 318 1 14 HELIX 12 AB3 SER A 320 GLN A 326 1 7 HELIX 13 AB4 SER A 340 ASN A 365 1 26 HELIX 14 AB5 ASN A 371 LYS A 378 1 8 HELIX 15 AB6 PRO A 380 GLY A 396 1 17 HELIX 16 AB7 ILE A 399 SER A 409 1 11 HELIX 17 AB8 THR A 421 ILE A 439 1 19 HELIX 18 AB9 PHE A 470 THR A 478 1 9 HELIX 19 AC1 SER A 489 GLY A 497 1 9 HELIX 20 AC2 ALA B 2 CYS B 17 1 16 HELIX 21 AC3 LEU B 87 SER B 91 5 5 HELIX 22 AC4 LYS B 100 ASP B 114 1 15 HELIX 23 AC5 ARG B 122 LYS B 131 1 10 HELIX 24 AC6 ASP B 132 GLY B 148 1 17 HELIX 25 AC7 THR C 22 GLY C 35 1 14 HELIX 26 AC8 PRO C 37 ASP C 39 5 3 SHEET 1 AA1 5 LEU A 20 VAL A 22 0 SHEET 2 AA1 5 VAL A 28 GLY A 36 -1 O HIS A 29 N TYR A 21 SHEET 3 AA1 5 ARG A 465 HIS A 469 -1 O ILE A 466 N VAL A 35 SHEET 4 AA1 5 PHE A 460 HIS A 462 -1 N PHE A 460 O SER A 467 SHEET 5 AA1 5 ARG A 501 LEU A 502 1 O LEU A 502 N SER A 461 SHEET 1 AA2 2 ASP A 43 THR A 45 0 SHEET 2 AA2 2 ARG C 74 GLY C 76 1 O ARG C 74 N ASN A 44 SHEET 1 AA3 2 SER A 59 HIS A 61 0 SHEET 2 AA3 2 VAL A 64 LYS A 66 -1 O LYS A 66 N SER A 59 SHEET 1 AA4 2 ALA A 157 ARG A 161 0 SHEET 2 AA4 2 GLU A 447 ALA A 451 -1 O VAL A 450 N PHE A 158 SHEET 1 AA5 2 THR A 218 PRO A 219 0 SHEET 2 AA5 2 GLU A 337 ILE A 338 -1 O ILE A 338 N THR A 218 SHEET 1 AA6 4 PHE B 22 VAL B 27 0 SHEET 2 AA6 4 THR B 34 ILE B 39 -1 O GLN B 36 N GLN B 26 SHEET 3 AA6 4 PHE B 51 ASN B 56 -1 O PHE B 51 N ILE B 39 SHEET 4 AA6 4 LYS B 67 PHE B 70 -1 O LYS B 67 N ASN B 56 SHEET 1 AA7 5 ILE C 13 VAL C 17 0 SHEET 2 AA7 5 MET C 1 THR C 7 -1 N MET C 1 O VAL C 17 SHEET 3 AA7 5 THR C 66 LEU C 71 1 O LEU C 67 N LYS C 6 SHEET 4 AA7 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA7 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK NZ LYS B 86 C GLY C 76 1555 1555 1.26 CISPEP 1 GLU A 379 PRO A 380 0 3.45 CISPEP 2 PRO B 44 PRO B 45 0 10.39 CISPEP 3 TYR B 61 PRO B 62 0 5.29 CRYST1 101.528 101.528 352.326 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009849 0.005687 0.000000 0.00000 SCALE2 0.000000 0.011373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002838 0.00000