HEADER TRANSFERASE/INHIBITOR 13-MAR-18 6CPG TITLE STRUCTURE OF DEPHOSPHORYLATED AURORA A (122-403) IN COMPLEX WITH TITLE 2 INHIBITING MONOBODY AND AT9283 IN AN INACTIVE CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: AURORA 2,AURORA/IPL1-RELATED KINASE 1,HARK1,BREAST TUMOR- COMPND 5 AMPLIFIED KINASE,SERINE/THREONINE-PROTEIN KINASE 15,SERINE/THREONINE- COMPND 6 PROTEIN KINASE 6,SERINE/THREONINE-PROTEIN KINASE AURORA-A; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MONOBODY; COMPND 11 CHAIN: B, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHBT KEYWDS PROTEIN KINASE, DFG-LOOP, MONOBODY, AT9283, TRANSFERASE, TRANSFERASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.OTTEN,S.KUTTER,A.ZORBA,R.A.P.PADUA,A.KOIDE,S.KOIDE,D.KERN REVDAT 7 04-OCT-23 6CPG 1 REMARK REVDAT 6 16-MAR-22 6CPG 1 REMARK REVDAT 5 20-NOV-19 6CPG 1 REMARK REVDAT 4 20-FEB-19 6CPG 1 REMARK REVDAT 3 05-SEP-18 6CPG 1 SOURCE AUTHOR REVDAT 2 04-JUL-18 6CPG 1 SOURCE REVDAT 1 27-JUN-18 6CPG 0 JRNL AUTH W.PITSAWONG,V.BUOSI,R.OTTEN,R.V.AGAFONOV,A.ZORBA,N.KERN, JRNL AUTH 2 S.KUTTER,G.KERN,R.A.PADUA,X.MENICHE,D.KERN JRNL TITL DYNAMICS OF HUMAN PROTEIN KINASE AURORA A LINKED TO DRUG JRNL TITL 2 SELECTIVITY. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29901437 JRNL DOI 10.7554/ELIFE.36656 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 19556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1700 - 6.7400 0.99 1388 155 0.2295 0.2935 REMARK 3 2 6.7400 - 5.3500 0.99 1298 143 0.2828 0.3301 REMARK 3 3 5.3500 - 4.6800 0.98 1283 143 0.2507 0.2874 REMARK 3 4 4.6800 - 4.2500 0.99 1276 142 0.2652 0.3326 REMARK 3 5 4.2500 - 3.9500 0.99 1277 142 0.2700 0.3396 REMARK 3 6 3.9500 - 3.7100 0.99 1269 141 0.2800 0.3608 REMARK 3 7 3.7100 - 3.5300 1.00 1265 140 0.3068 0.3432 REMARK 3 8 3.5300 - 3.3700 0.99 1250 138 0.3367 0.3977 REMARK 3 9 3.3700 - 3.2400 0.98 1256 140 0.3411 0.3947 REMARK 3 10 3.2400 - 3.1300 0.98 1237 137 0.3484 0.3923 REMARK 3 11 3.1300 - 3.0300 0.98 1212 136 0.3572 0.3902 REMARK 3 12 3.0300 - 2.9500 0.96 1222 135 0.3847 0.3900 REMARK 3 13 2.9500 - 2.8700 0.94 1189 132 0.4245 0.4760 REMARK 3 14 2.8700 - 2.8000 0.94 1179 131 0.4057 0.4223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.548 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.771 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5323 REMARK 3 ANGLE : 0.555 7280 REMARK 3 CHIRALITY : 0.041 814 REMARK 3 PLANARITY : 0.003 929 REMARK 3 DIHEDRAL : 7.486 3083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) AND REMARK 200 MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 V0.4.0.0-158-GD975537, XDS REMARK 200 BUILT 20161205 REMARK 200 DATA SCALING SOFTWARE : XDS BUILT 20161205 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.04700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MQ4, 3K2M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 1:1 RATIO OF PROTEIN MIXTURE TO REMARK 280 MOTHER LIQUOR WAS OBTAINED BY COMBINING 0.5 UL OF SAMPLE [240 UM REMARK 280 DEP AURORA A + 1.0 MM AT9283 + 250 UM MB] WITH 0.5 UL OF MOTHER REMARK 280 LIQUOR [0.1 M BIS-TRIS, PH 5.5, 0.2 M MAGNESIUM CHLORIDE, 19% (W/ REMARK 280 V) PEG-3350]., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 119 REMARK 465 VAL A 120 REMARK 465 ASP A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 ARG A 126 REMARK 465 SER A 278 REMARK 465 VAL A 279 REMARK 465 HIS A 280 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 465 ARG A 285 REMARK 465 ARG A 286 REMARK 465 THR A 287 REMARK 465 THR A 288 REMARK 465 LEU A 289 REMARK 465 SER A 388 REMARK 465 LYS A 389 REMARK 465 PRO A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 CYS A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 SER B 4 REMARK 465 SER D 119 REMARK 465 VAL D 120 REMARK 465 ASP D 121 REMARK 465 GLU D 122 REMARK 465 SER D 123 REMARK 465 LYS D 124 REMARK 465 LYS D 125 REMARK 465 ARG D 126 REMARK 465 VAL D 279 REMARK 465 HIS D 280 REMARK 465 ALA D 281 REMARK 465 PRO D 282 REMARK 465 SER D 283 REMARK 465 SER D 284 REMARK 465 ARG D 285 REMARK 465 ARG D 286 REMARK 465 THR D 287 REMARK 465 THR D 288 REMARK 465 LYS D 389 REMARK 465 PRO D 390 REMARK 465 SER D 391 REMARK 465 ASN D 392 REMARK 465 CYS D 393 REMARK 465 GLN D 394 REMARK 465 ASN D 395 REMARK 465 LYS D 396 REMARK 465 GLU D 397 REMARK 465 SER D 398 REMARK 465 ALA D 399 REMARK 465 SER D 400 REMARK 465 LYS D 401 REMARK 465 GLN D 402 REMARK 465 SER D 403 REMARK 465 GLY E 1 REMARK 465 SER E 2 REMARK 465 VAL E 3 REMARK 465 SER E 4 REMARK 465 SER E 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 SER A 155 OG REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 LEU A 178 CG CD1 CD2 REMARK 470 THR A 204 OG1 CG2 REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 SER A 266 OG REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 271 NZ REMARK 470 TRP A 277 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 277 CZ3 CH2 REMARK 470 THR A 292 OG1 CG2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 MET A 305 CG SD CE REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 THR B 8 OG1 CG2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 THR B 16 OG1 CG2 REMARK 470 SER B 19 OG REMARK 470 ASP B 25 CG OD1 OD2 REMARK 470 VAL B 29 CG1 CG2 REMARK 470 THR B 30 OG1 CG2 REMARK 470 VAL B 32 CG1 CG2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 ASN B 44 CG OD1 ND2 REMARK 470 VAL B 47 CG1 CG2 REMARK 470 SER B 55 OG REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 SER B 57 OG REMARK 470 SER B 62 OG REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 VAL B 68 CG1 CG2 REMARK 470 SER B 85 OG REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 THR B 93 OG1 CG2 REMARK 470 GLN D 127 CG CD OE1 NE2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 LYS D 141 CG CD CE NZ REMARK 470 LYS D 143 CG CD CE NZ REMARK 470 ARG D 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 156 CG CD CE NZ REMARK 470 ILE D 184 CG1 CG2 CD1 REMARK 470 HIS D 187 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 230 CG CD OE1 OE2 REMARK 470 GLN D 231 CG CD OE1 NE2 REMARK 470 HIS D 248 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 251 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 253 CG1 CG2 CD1 REMARK 470 SER D 266 OG REMARK 470 LEU D 289 CG CD1 CD2 REMARK 470 CYS D 290 SG REMARK 470 LYS D 326 CG CD CE NZ REMARK 470 GLU D 336 CG CD OE1 OE2 REMARK 470 LYS D 339 CG CD CE NZ REMARK 470 ASN D 367 CG OD1 ND2 REMARK 470 ARG D 375 CG CD NE CZ NH1 NH2 REMARK 470 THR E 8 OG1 CG2 REMARK 470 LYS E 9 CD CE NZ REMARK 470 SER E 19 OG REMARK 470 LEU E 20 CG CD1 CD2 REMARK 470 LEU E 21 CG CD1 CD2 REMARK 470 VAL E 29 CG1 CG2 REMARK 470 THR E 30 OG1 CG2 REMARK 470 VAL E 32 CG1 CG2 REMARK 470 ILE E 36 CG1 CG2 CD1 REMARK 470 GLU E 40 CG CD OE1 OE2 REMARK 470 THR E 41 OG1 CG2 REMARK 470 ASN E 44 CG OD1 ND2 REMARK 470 SER E 45 OG REMARK 470 VAL E 47 CG1 CG2 REMARK 470 GLU E 49 CG CD OE1 OE2 REMARK 470 THR E 60 OG1 CG2 REMARK 470 ILE E 61 CG1 CG2 CD1 REMARK 470 SER E 62 OG REMARK 470 LEU E 64 CG CD1 CD2 REMARK 470 LYS E 65 CG CD CE NZ REMARK 470 VAL E 68 CG1 CG2 REMARK 470 ASP E 69 CG OD1 OD2 REMARK 470 TYR E 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR E 71 OG1 CG2 REMARK 470 ILE E 72 CG1 CG2 CD1 REMARK 470 SER E 85 OG REMARK 470 ILE E 87 CG1 CG2 CD1 REMARK 470 SER E 88 OG REMARK 470 ILE E 89 CG1 CG2 CD1 REMARK 470 ASN E 90 CG OD1 ND2 REMARK 470 ARG E 92 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 152 H LYS A 156 1.57 REMARK 500 H GLY D 136 O LEU D 149 1.58 REMARK 500 N GLY D 136 O LEU D 149 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -156.80 -133.32 REMARK 500 SER A 226 -18.51 76.61 REMARK 500 HIS A 254 71.59 55.39 REMARK 500 ALA A 267 42.45 -88.12 REMARK 500 PHE A 275 -67.90 -141.15 REMARK 500 ASP A 307 -155.85 -133.51 REMARK 500 VAL A 344 70.53 56.50 REMARK 500 PRO A 349 173.78 -56.82 REMARK 500 GLU A 379 30.48 -99.83 REMARK 500 LYS B 9 41.18 -93.72 REMARK 500 ASN B 44 -148.61 -111.33 REMARK 500 PRO B 53 150.03 -48.42 REMARK 500 ALA B 59 145.44 -171.57 REMARK 500 SER D 226 -53.96 68.78 REMARK 500 HIS D 254 98.64 61.84 REMARK 500 TRP D 277 -165.88 -79.01 REMARK 500 LYS D 326 145.18 -173.19 REMARK 500 THR D 353 170.34 -59.92 REMARK 500 SER D 387 -173.92 -66.14 REMARK 500 ASP E 69 89.86 -61.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 35R A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 35R D 501 DBREF 6CPG A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 6CPG B 1 93 PDB 6CPG 6CPG 1 93 DBREF 6CPG D 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 6CPG E 1 93 PDB 6CPG 6CPG 1 93 SEQADV 6CPG SER A 119 UNP O14965 EXPRESSION TAG SEQADV 6CPG VAL A 120 UNP O14965 EXPRESSION TAG SEQADV 6CPG ASP A 121 UNP O14965 EXPRESSION TAG SEQADV 6CPG SER D 119 UNP O14965 EXPRESSION TAG SEQADV 6CPG VAL D 120 UNP O14965 EXPRESSION TAG SEQADV 6CPG ASP D 121 UNP O14965 EXPRESSION TAG SEQRES 1 A 285 SER VAL ASP GLU SER LYS LYS ARG GLN TRP ALA LEU GLU SEQRES 2 A 285 ASP PHE GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE SEQRES 3 A 285 GLY ASN VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE SEQRES 4 A 285 ILE LEU ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU SEQRES 5 A 285 LYS ALA GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU SEQRES 6 A 285 ILE GLN SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU SEQRES 7 A 285 TYR GLY TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE SEQRES 8 A 285 LEU GLU TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU SEQRES 9 A 285 GLN LYS LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR SEQRES 10 A 285 TYR ILE THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SEQRES 11 A 285 SER LYS ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN SEQRES 12 A 285 LEU LEU LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP SEQRES 13 A 285 PHE GLY TRP SER VAL HIS ALA PRO SER SER ARG ARG THR SEQRES 14 A 285 THR LEU CYS GLY THR LEU ASP TYR LEU PRO PRO GLU MET SEQRES 15 A 285 ILE GLU GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SEQRES 16 A 285 SER LEU GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS SEQRES 17 A 285 PRO PRO PHE GLU ALA ASN THR TYR GLN GLU THR TYR LYS SEQRES 18 A 285 ARG ILE SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL SEQRES 19 A 285 THR GLU GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS SEQRES 20 A 285 HIS ASN PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU SEQRES 21 A 285 GLU HIS PRO TRP ILE THR ALA ASN SER SER LYS PRO SER SEQRES 22 A 285 ASN CYS GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 93 GLY SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL SEQRES 2 B 93 ALA ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA SEQRES 3 B 93 PRO ALA VAL THR VAL VAL HIS TYR VAL ILE THR TYR GLY SEQRES 4 B 93 GLU THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL SEQRES 5 B 93 PRO GLY SER LYS SER THR ALA THR ILE SER GLY LEU LYS SEQRES 6 B 93 PRO GLY VAL ASP TYR THR ILE THR VAL TYR ALA ILE ASP SEQRES 7 B 93 PHE TYR TRP GLY SER TYR SER PRO ILE SER ILE ASN TYR SEQRES 8 B 93 ARG THR SEQRES 1 D 285 SER VAL ASP GLU SER LYS LYS ARG GLN TRP ALA LEU GLU SEQRES 2 D 285 ASP PHE GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE SEQRES 3 D 285 GLY ASN VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE SEQRES 4 D 285 ILE LEU ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU SEQRES 5 D 285 LYS ALA GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU SEQRES 6 D 285 ILE GLN SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU SEQRES 7 D 285 TYR GLY TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE SEQRES 8 D 285 LEU GLU TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU SEQRES 9 D 285 GLN LYS LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR SEQRES 10 D 285 TYR ILE THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SEQRES 11 D 285 SER LYS ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN SEQRES 12 D 285 LEU LEU LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP SEQRES 13 D 285 PHE GLY TRP SER VAL HIS ALA PRO SER SER ARG ARG THR SEQRES 14 D 285 THR LEU CYS GLY THR LEU ASP TYR LEU PRO PRO GLU MET SEQRES 15 D 285 ILE GLU GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SEQRES 16 D 285 SER LEU GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS SEQRES 17 D 285 PRO PRO PHE GLU ALA ASN THR TYR GLN GLU THR TYR LYS SEQRES 18 D 285 ARG ILE SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL SEQRES 19 D 285 THR GLU GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS SEQRES 20 D 285 HIS ASN PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU SEQRES 21 D 285 GLU HIS PRO TRP ILE THR ALA ASN SER SER LYS PRO SER SEQRES 22 D 285 ASN CYS GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 E 93 GLY SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL SEQRES 2 E 93 ALA ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA SEQRES 3 E 93 PRO ALA VAL THR VAL VAL HIS TYR VAL ILE THR TYR GLY SEQRES 4 E 93 GLU THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL SEQRES 5 E 93 PRO GLY SER LYS SER THR ALA THR ILE SER GLY LEU LYS SEQRES 6 E 93 PRO GLY VAL ASP TYR THR ILE THR VAL TYR ALA ILE ASP SEQRES 7 E 93 PHE TYR TRP GLY SER TYR SER PRO ILE SER ILE ASN TYR SEQRES 8 E 93 ARG THR HET 35R A 501 51 HET 35R D 501 51 HETNAM 35R 1-CYCLOPROPYL-3-{3-[5-(MORPHOLIN-4-YLMETHYL)-1H- HETNAM 2 35R BENZIMIDAZOL-2-YL]-1H-PYRAZOL-4-YL}UREA FORMUL 5 35R 2(C19 H23 N7 O2) HELIX 1 AA1 ALA A 129 PHE A 133 5 5 HELIX 2 AA2 LYS A 166 GLY A 173 1 8 HELIX 3 AA3 VAL A 174 HIS A 187 1 14 HELIX 4 AA4 THR A 217 SER A 226 1 10 HELIX 5 AA5 ASP A 229 LYS A 250 1 22 HELIX 6 AA6 LYS A 258 GLU A 260 5 3 HELIX 7 AA7 GLY A 291 LEU A 296 5 6 HELIX 8 AA8 PRO A 297 GLU A 302 1 6 HELIX 9 AA9 LYS A 309 GLY A 325 1 17 HELIX 10 AB1 THR A 333 VAL A 344 1 12 HELIX 11 AB2 THR A 353 LEU A 364 1 12 HELIX 12 AB3 ASN A 367 ARG A 371 5 5 HELIX 13 AB4 MET A 373 GLU A 379 1 7 HELIX 14 AB5 HIS A 380 SER A 387 1 8 HELIX 15 AB6 ALA D 129 PHE D 133 5 5 HELIX 16 AB7 LYS D 166 GLY D 173 1 8 HELIX 17 AB8 VAL D 174 GLN D 185 1 12 HELIX 18 AB9 VAL D 218 SER D 226 1 9 HELIX 19 AC1 ASP D 229 LYS D 250 1 22 HELIX 20 AC2 LYS D 258 GLU D 260 5 3 HELIX 21 AC3 GLY D 291 LEU D 296 5 6 HELIX 22 AC4 PRO D 297 GLU D 302 1 6 HELIX 23 AC5 LYS D 309 GLY D 325 1 17 HELIX 24 AC6 THR D 333 VAL D 344 1 12 HELIX 25 AC7 THR D 353 LEU D 364 1 12 HELIX 26 AC8 MET D 373 GLU D 379 1 7 HELIX 27 AC9 HIS D 380 SER D 387 1 8 SHEET 1 AA1 5 PRO A 138 LYS A 141 0 SHEET 2 AA1 5 GLY A 145 ARG A 151 -1 O VAL A 147 N LEU A 139 SHEET 3 AA1 5 ILE A 158 PHE A 165 -1 O VAL A 163 N ASN A 146 SHEET 4 AA1 5 ARG A 205 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 AA1 5 LEU A 196 HIS A 201 -1 N PHE A 200 O TYR A 207 SHEET 1 AA2 2 LEU A 262 LEU A 264 0 SHEET 2 AA2 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 AA3 3 GLU B 11 ALA B 15 0 SHEET 2 AA3 3 SER B 19 SER B 23 -1 O SER B 23 N GLU B 11 SHEET 3 AA3 3 THR B 58 SER B 62 -1 O ALA B 59 N ILE B 22 SHEET 1 AA4 4 GLN B 48 PRO B 53 0 SHEET 2 AA4 4 HIS B 33 GLU B 40 -1 N TYR B 34 O VAL B 52 SHEET 3 AA4 4 ASP B 69 ASP B 78 -1 O TYR B 75 N VAL B 35 SHEET 4 AA4 4 GLY B 82 SER B 83 -1 O GLY B 82 N ASP B 78 SHEET 1 AA5 4 GLN B 48 PRO B 53 0 SHEET 2 AA5 4 HIS B 33 GLU B 40 -1 N TYR B 34 O VAL B 52 SHEET 3 AA5 4 ASP B 69 ASP B 78 -1 O TYR B 75 N VAL B 35 SHEET 4 AA5 4 ILE B 87 ARG B 92 -1 O ILE B 89 N ILE B 72 SHEET 1 AA6 5 PRO D 138 LYS D 141 0 SHEET 2 AA6 5 GLY D 145 ARG D 151 -1 O VAL D 147 N LEU D 139 SHEET 3 AA6 5 ILE D 158 PHE D 165 -1 O VAL D 163 N ASN D 146 SHEET 4 AA6 5 ARG D 205 LEU D 210 -1 O LEU D 210 N ALA D 160 SHEET 5 AA6 5 LEU D 196 HIS D 201 -1 N TYR D 197 O ILE D 209 SHEET 1 AA7 3 GLY D 216 THR D 217 0 SHEET 2 AA7 3 LEU D 262 LEU D 264 -1 O LEU D 264 N GLY D 216 SHEET 3 AA7 3 LEU D 270 ILE D 272 -1 O LYS D 271 N LEU D 263 SHEET 1 AA8 3 LEU E 10 ALA E 15 0 SHEET 2 AA8 3 SER E 19 TRP E 24 -1 O LEU E 21 N ALA E 14 SHEET 3 AA8 3 THR E 58 SER E 62 -1 O ILE E 61 N LEU E 20 SHEET 1 AA9 4 PHE E 50 PRO E 53 0 SHEET 2 AA9 4 HIS E 33 THR E 37 -1 N ILE E 36 O PHE E 50 SHEET 3 AA9 4 ASP E 69 ASP E 78 -1 O THR E 73 N THR E 37 SHEET 4 AA9 4 GLY E 82 SER E 83 -1 O GLY E 82 N ASP E 78 SHEET 1 AB1 4 PHE E 50 PRO E 53 0 SHEET 2 AB1 4 HIS E 33 THR E 37 -1 N ILE E 36 O PHE E 50 SHEET 3 AB1 4 ASP E 69 ASP E 78 -1 O THR E 73 N THR E 37 SHEET 4 AB1 4 ILE E 87 ARG E 92 -1 O TYR E 91 N TYR E 70 CISPEP 1 VAL B 6 PRO B 7 0 -1.92 CISPEP 2 VAL E 6 PRO E 7 0 0.19 SITE 1 AC1 6 LEU A 139 VAL A 147 ALA A 160 GLU A 211 SITE 2 AC1 6 ALA A 213 GLY A 216 SITE 1 AC2 9 LEU D 139 GLY D 140 GLU D 211 ALA D 213 SITE 2 AC2 9 PRO D 214 GLY D 216 ARG D 220 LEU D 263 SITE 3 AC2 9 THR D 347 CRYST1 63.860 69.700 175.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005696 0.00000