data_6CQ3 # _entry.id 6CQ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CQ3 pdb_00006cq3 10.2210/pdb6cq3/pdb WWPDB D_1000233206 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CQ3 _pdbx_database_status.recvd_initial_deposition_date 2018-03-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Delgado, J.L.' 1 ? 'Vance, N.R.' 2 0000-0001-5858-6751 'Kerns, R.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of DNA dodecamer D(CGCGAATTCGCG)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Delgado, J.L.' 1 ? primary 'Vance, N.R.' 2 ? primary 'Kerns, R.J.' 3 ? # _cell.entry_id 6CQ3 _cell.length_a 24.330 _cell.length_b 40.510 _cell.length_c 65.030 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CQ3 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 4 water nat water 18.015 173 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CQ3 _struct_ref.pdbx_db_accession 6CQ3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CQ3 A 1 ? 12 ? 6CQ3 1 ? 12 ? 1 12 2 1 6CQ3 B 1 ? 12 ? 6CQ3 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CQ3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% (v/v) 2-Methyl-2,4-pentanediol, 40mM Sodium cacodylate trihydrate, 20mM Hexammine cobalt(III) chloride, 40mM Lithium chloride, 20mM Magnesium chloride hexahydrate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RDI CMOS_8M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-01-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0008 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0008 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6CQ3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.3 _reflns.d_resolution_low 34.384 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16300 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.04 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.6 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.054 _reflns.pdbx_Rpim_I_all 0.021 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.32 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 47 _reflns_shell.percent_possible_all 98.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.753 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.pdbx_Rsym_value 0.815 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.887 _reflns_shell.pdbx_Rpim_I_all 0.446 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.779 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6CQ3 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16300 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.384 _refine.ls_d_res_high 1.300 _refine.ls_percent_reflns_obs 99.05 _refine.ls_R_factor_obs 0.1506 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1488 _refine.ls_R_factor_R_free 0.1886 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.98 _refine.ls_number_reflns_R_free 811 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 8BNA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 19.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 663 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 34.384 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 544 'X-RAY DIFFRACTION' ? f_angle_d 1.298 ? ? 836 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 30.735 ? ? 232 'X-RAY DIFFRACTION' ? f_chiral_restr 0.064 ? ? 94 'X-RAY DIFFRACTION' ? f_plane_restr 0.022 ? ? 24 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.3001 1.3816 2482 0.1962 98.00 0.2708 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.3816 1.4882 2521 0.1629 99.00 0.2325 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.4882 1.6380 2542 0.1334 99.00 0.1982 . . 130 . . . . 'X-RAY DIFFRACTION' . 1.6380 1.8750 2591 0.1161 99.00 0.1703 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.8750 2.3622 2607 0.1475 100.00 0.1599 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3622 34.3962 2746 0.1558 99.00 0.1899 . . 131 . . . . # _struct.entry_id 6CQ3 _struct.title 'Crystal structure of DNA dodecamer D(CGCGAATTCGCG)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CQ3 _struct_keywords.text 'DNA, dodecamer' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 227 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 232 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 241 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 268 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 278 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 291 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 254 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 261 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 274 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 289 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 294 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 295 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc13 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 250 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc14 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 251 1_555 ? ? ? ? ? ? ? 1.913 ? ? metalc15 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 252 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc16 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 282 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc17 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 285 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc18 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 103 A HOH 293 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 219 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 271 1_555 ? ? ? ? ? ? ? 1.908 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 272 1_555 ? ? ? ? ? ? ? 2.049 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A CO 103 ? 6 'binding site for residue CO A 103' AC4 Software B MG 101 ? 3 'binding site for residue MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 227 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 232 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 241 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 268 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 278 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH A 291 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 254 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 261 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 274 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 289 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 294 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 295 . ? 1_555 ? 13 AC3 6 HOH G . ? HOH A 250 . ? 1_555 ? 14 AC3 6 HOH G . ? HOH A 251 . ? 1_555 ? 15 AC3 6 HOH G . ? HOH A 252 . ? 1_555 ? 16 AC3 6 HOH G . ? HOH A 282 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 285 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH A 293 . ? 1_555 ? 19 AC4 3 HOH H . ? HOH B 219 . ? 1_555 ? 20 AC4 3 HOH H . ? HOH B 271 . ? 1_555 ? 21 AC4 3 HOH H . ? HOH B 272 . ? 1_555 ? # _atom_sites.entry_id 6CQ3 _atom_sites.fract_transf_matrix[1][1] 0.041102 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 101 MG MG A . D 2 MG 1 102 102 MG MG A . E 3 CO 1 103 103 CO CO A . F 2 MG 1 101 101 MG MG B . G 4 HOH 1 201 207 HOH HOH A . G 4 HOH 2 202 226 HOH HOH A . G 4 HOH 3 203 201 HOH HOH A . G 4 HOH 4 204 203 HOH HOH A . G 4 HOH 5 205 214 HOH HOH A . G 4 HOH 6 206 208 HOH HOH A . G 4 HOH 7 207 209 HOH HOH A . G 4 HOH 8 208 202 HOH HOH A . G 4 HOH 9 209 206 HOH HOH A . G 4 HOH 10 210 205 HOH HOH A . G 4 HOH 11 211 211 HOH HOH A . G 4 HOH 12 212 215 HOH HOH A . G 4 HOH 13 213 221 HOH HOH A . G 4 HOH 14 214 204 HOH HOH A . G 4 HOH 15 215 216 HOH HOH A . G 4 HOH 16 216 222 HOH HOH A . G 4 HOH 17 217 213 HOH HOH A . G 4 HOH 18 218 219 HOH HOH A . G 4 HOH 19 219 220 HOH HOH A . G 4 HOH 20 220 231 HOH HOH A . G 4 HOH 21 221 225 HOH HOH A . G 4 HOH 22 222 212 HOH HOH A . G 4 HOH 23 223 228 HOH HOH A . G 4 HOH 24 224 242 HOH HOH A . G 4 HOH 25 225 224 HOH HOH A . G 4 HOH 26 226 227 HOH HOH A . G 4 HOH 27 227 230 HOH HOH A . G 4 HOH 28 228 217 HOH HOH A . G 4 HOH 29 229 229 HOH HOH A . G 4 HOH 30 230 210 HOH HOH A . G 4 HOH 31 231 223 HOH HOH A . G 4 HOH 32 232 232 HOH HOH A . G 4 HOH 33 233 218 HOH HOH A . G 4 HOH 34 234 240 HOH HOH A . G 4 HOH 35 235 239 HOH HOH A . G 4 HOH 36 236 237 HOH HOH A . G 4 HOH 37 237 234 HOH HOH A . G 4 HOH 38 238 238 HOH HOH A . G 4 HOH 39 239 243 HOH HOH A . G 4 HOH 40 240 236 HOH HOH A . G 4 HOH 41 241 244 HOH HOH A . G 4 HOH 42 242 241 HOH HOH A . G 4 HOH 43 243 233 HOH HOH A . G 4 HOH 44 244 235 HOH HOH A . G 4 HOH 45 245 245 HOH HOH A . G 4 HOH 46 246 246 HOH HOH A . G 4 HOH 47 247 248 HOH HOH A . G 4 HOH 48 248 251 HOH HOH A . G 4 HOH 49 249 247 HOH HOH A . G 4 HOH 50 250 250 HOH HOH A . G 4 HOH 51 251 253 HOH HOH A . G 4 HOH 52 252 249 HOH HOH A . G 4 HOH 53 253 252 HOH HOH A . G 4 HOH 54 254 257 HOH HOH A . G 4 HOH 55 255 258 HOH HOH A . G 4 HOH 56 256 256 HOH HOH A . G 4 HOH 57 257 255 HOH HOH A . G 4 HOH 58 258 259 HOH HOH A . G 4 HOH 59 259 247 HOH HOH A . G 4 HOH 60 260 261 HOH HOH A . G 4 HOH 61 261 254 HOH HOH A . G 4 HOH 62 262 260 HOH HOH A . G 4 HOH 63 263 267 HOH HOH A . G 4 HOH 64 264 262 HOH HOH A . G 4 HOH 65 265 263 HOH HOH A . G 4 HOH 66 266 266 HOH HOH A . G 4 HOH 67 267 264 HOH HOH A . G 4 HOH 68 268 265 HOH HOH A . G 4 HOH 69 269 269 HOH HOH A . G 4 HOH 70 270 268 HOH HOH A . G 4 HOH 71 271 270 HOH HOH A . G 4 HOH 72 272 274 HOH HOH A . G 4 HOH 73 273 271 HOH HOH A . G 4 HOH 74 274 277 HOH HOH A . G 4 HOH 75 275 272 HOH HOH A . G 4 HOH 76 276 273 HOH HOH A . G 4 HOH 77 277 275 HOH HOH A . G 4 HOH 78 278 276 HOH HOH A . G 4 HOH 79 279 280 HOH HOH A . G 4 HOH 80 280 279 HOH HOH A . G 4 HOH 81 281 283 HOH HOH A . G 4 HOH 82 282 281 HOH HOH A . G 4 HOH 83 283 282 HOH HOH A . G 4 HOH 84 284 284 HOH HOH A . G 4 HOH 85 285 285 HOH HOH A . G 4 HOH 86 286 287 HOH HOH A . G 4 HOH 87 287 286 HOH HOH A . G 4 HOH 88 288 288 HOH HOH A . G 4 HOH 89 289 290 HOH HOH A . G 4 HOH 90 290 289 HOH HOH A . G 4 HOH 91 291 291 HOH HOH A . G 4 HOH 92 292 293 HOH HOH A . G 4 HOH 93 293 294 HOH HOH A . G 4 HOH 94 294 292 HOH HOH A . G 4 HOH 95 295 295 HOH HOH A . H 4 HOH 1 201 203 HOH HOH B . H 4 HOH 2 202 201 HOH HOH B . H 4 HOH 3 203 206 HOH HOH B . H 4 HOH 4 204 207 HOH HOH B . H 4 HOH 5 205 209 HOH HOH B . H 4 HOH 6 206 217 HOH HOH B . H 4 HOH 7 207 216 HOH HOH B . H 4 HOH 8 208 212 HOH HOH B . H 4 HOH 9 209 234 HOH HOH B . H 4 HOH 10 210 205 HOH HOH B . H 4 HOH 11 211 204 HOH HOH B . H 4 HOH 12 212 211 HOH HOH B . H 4 HOH 13 213 208 HOH HOH B . H 4 HOH 14 214 215 HOH HOH B . H 4 HOH 15 215 214 HOH HOH B . H 4 HOH 16 216 213 HOH HOH B . H 4 HOH 17 217 218 HOH HOH B . H 4 HOH 18 218 202 HOH HOH B . H 4 HOH 19 219 230 HOH HOH B . H 4 HOH 20 220 210 HOH HOH B . H 4 HOH 21 221 226 HOH HOH B . H 4 HOH 22 222 219 HOH HOH B . H 4 HOH 23 223 220 HOH HOH B . H 4 HOH 24 224 224 HOH HOH B . H 4 HOH 25 225 223 HOH HOH B . H 4 HOH 26 226 221 HOH HOH B . H 4 HOH 27 227 222 HOH HOH B . H 4 HOH 28 228 225 HOH HOH B . H 4 HOH 29 229 231 HOH HOH B . H 4 HOH 30 230 228 HOH HOH B . H 4 HOH 31 231 227 HOH HOH B . H 4 HOH 32 232 237 HOH HOH B . H 4 HOH 33 233 240 HOH HOH B . H 4 HOH 34 234 229 HOH HOH B . H 4 HOH 35 235 233 HOH HOH B . H 4 HOH 36 236 236 HOH HOH B . H 4 HOH 37 237 239 HOH HOH B . H 4 HOH 38 238 238 HOH HOH B . H 4 HOH 39 239 235 HOH HOH B . H 4 HOH 40 240 241 HOH HOH B . H 4 HOH 41 241 242 HOH HOH B . H 4 HOH 42 242 232 HOH HOH B . H 4 HOH 43 243 243 HOH HOH B . H 4 HOH 44 244 244 HOH HOH B . H 4 HOH 45 245 245 HOH HOH B . H 4 HOH 46 246 246 HOH HOH B . H 4 HOH 47 247 250 HOH HOH B . H 4 HOH 48 248 249 HOH HOH B . H 4 HOH 49 249 248 HOH HOH B . H 4 HOH 50 250 251 HOH HOH B . H 4 HOH 51 251 252 HOH HOH B . H 4 HOH 52 252 253 HOH HOH B . H 4 HOH 53 253 254 HOH HOH B . H 4 HOH 54 254 259 HOH HOH B . H 4 HOH 55 255 256 HOH HOH B . H 4 HOH 56 256 260 HOH HOH B . H 4 HOH 57 257 261 HOH HOH B . H 4 HOH 58 258 258 HOH HOH B . H 4 HOH 59 259 255 HOH HOH B . H 4 HOH 60 260 263 HOH HOH B . H 4 HOH 61 261 262 HOH HOH B . H 4 HOH 62 262 278 HOH HOH B . H 4 HOH 63 263 265 HOH HOH B . H 4 HOH 64 264 266 HOH HOH B . H 4 HOH 65 265 257 HOH HOH B . H 4 HOH 66 266 267 HOH HOH B . H 4 HOH 67 267 264 HOH HOH B . H 4 HOH 68 268 269 HOH HOH B . H 4 HOH 69 269 268 HOH HOH B . H 4 HOH 70 270 270 HOH HOH B . H 4 HOH 71 271 272 HOH HOH B . H 4 HOH 72 272 271 HOH HOH B . H 4 HOH 73 273 274 HOH HOH B . H 4 HOH 74 274 273 HOH HOH B . H 4 HOH 75 275 276 HOH HOH B . H 4 HOH 76 276 275 HOH HOH B . H 4 HOH 77 277 279 HOH HOH B . H 4 HOH 78 278 278 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1320 ? 1 MORE -17 ? 1 'SSA (A^2)' 4770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 232 ? 1_555 91.1 ? 2 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 241 ? 1_555 87.9 ? 3 O ? G HOH . ? A HOH 232 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 241 ? 1_555 91.5 ? 4 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 268 ? 1_555 89.9 ? 5 O ? G HOH . ? A HOH 232 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 268 ? 1_555 91.8 ? 6 O ? G HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 268 ? 1_555 176.0 ? 7 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 278 ? 1_555 175.0 ? 8 O ? G HOH . ? A HOH 232 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 278 ? 1_555 88.5 ? 9 O ? G HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 278 ? 1_555 87.2 ? 10 O ? G HOH . ? A HOH 268 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 278 ? 1_555 95.1 ? 11 O ? G HOH . ? A HOH 227 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 291 ? 1_555 95.7 ? 12 O ? G HOH . ? A HOH 232 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 291 ? 1_555 172.9 ? 13 O ? G HOH . ? A HOH 241 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 291 ? 1_555 86.7 ? 14 O ? G HOH . ? A HOH 268 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 291 ? 1_555 90.2 ? 15 O ? G HOH . ? A HOH 278 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 291 ? 1_555 84.5 ? 16 O ? G HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 261 ? 1_555 92.6 ? 17 O ? G HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 274 ? 1_555 88.5 ? 18 O ? G HOH . ? A HOH 261 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 274 ? 1_555 98.0 ? 19 O ? G HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 289 ? 1_555 90.6 ? 20 O ? G HOH . ? A HOH 261 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 289 ? 1_555 166.0 ? 21 O ? G HOH . ? A HOH 274 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 289 ? 1_555 95.7 ? 22 O ? G HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 294 ? 1_555 96.7 ? 23 O ? G HOH . ? A HOH 261 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 294 ? 1_555 85.5 ? 24 O ? G HOH . ? A HOH 274 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 294 ? 1_555 173.7 ? 25 O ? G HOH . ? A HOH 289 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 294 ? 1_555 80.7 ? 26 O ? G HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 295 ? 1_555 170.3 ? 27 O ? G HOH . ? A HOH 261 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 295 ? 1_555 81.8 ? 28 O ? G HOH . ? A HOH 274 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 295 ? 1_555 84.4 ? 29 O ? G HOH . ? A HOH 289 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 295 ? 1_555 96.7 ? 30 O ? G HOH . ? A HOH 294 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 295 ? 1_555 90.9 ? 31 O ? G HOH . ? A HOH 250 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 251 ? 1_555 89.2 ? 32 O ? G HOH . ? A HOH 250 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 252 ? 1_555 92.0 ? 33 O ? G HOH . ? A HOH 251 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 252 ? 1_555 83.5 ? 34 O ? G HOH . ? A HOH 250 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 282 ? 1_555 89.5 ? 35 O ? G HOH . ? A HOH 251 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 282 ? 1_555 94.3 ? 36 O ? G HOH . ? A HOH 252 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 282 ? 1_555 177.4 ? 37 O ? G HOH . ? A HOH 250 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 285 ? 1_555 92.7 ? 38 O ? G HOH . ? A HOH 251 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 285 ? 1_555 174.4 ? 39 O ? G HOH . ? A HOH 252 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 285 ? 1_555 91.1 ? 40 O ? G HOH . ? A HOH 282 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 285 ? 1_555 91.0 ? 41 O ? G HOH . ? A HOH 250 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 293 ? 1_555 179.2 ? 42 O ? G HOH . ? A HOH 251 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 293 ? 1_555 91.6 ? 43 O ? G HOH . ? A HOH 252 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 293 ? 1_555 88.0 ? 44 O ? G HOH . ? A HOH 282 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 293 ? 1_555 90.6 ? 45 O ? G HOH . ? A HOH 285 ? 1_555 CO ? E CO . ? A CO 103 ? 1_555 O ? G HOH . ? A HOH 293 ? 1_555 86.4 ? 46 O ? H HOH . ? B HOH 219 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 271 ? 1_555 161.9 ? 47 O ? H HOH . ? B HOH 219 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 272 ? 1_555 95.0 ? 48 O ? H HOH . ? B HOH 271 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 272 ? 1_555 102.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-02 2 'Structure model' 1 1 2019-02-20 3 'Structure model' 1 2 2019-12-18 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 2018/01/26 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.22 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.7 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.2 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.362 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.057 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 10 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 10 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.93 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.63 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 294 ? 5.82 . 2 1 O ? A HOH 295 ? 6.07 . 3 1 O ? B HOH 275 ? 6.09 . 4 1 O ? B HOH 276 ? 6.13 . 5 1 O ? B HOH 277 ? 6.21 . 6 1 O ? B HOH 278 ? 6.27 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 MG MG MG N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6CQ3 'double helix' 6CQ3 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.243 -0.195 0.232 1.579 -16.908 0.524 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.236 -0.201 0.538 7.511 -10.593 -2.207 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.098 -0.153 0.081 -1.701 -1.580 -1.404 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.155 -0.172 0.093 15.304 -3.552 -0.091 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.019 -0.138 0.004 8.721 -16.422 2.296 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.040 -0.121 0.092 3.015 -16.282 4.426 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.098 -0.153 0.076 0.045 -16.667 3.235 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.109 -0.187 -0.093 -2.368 -12.810 2.766 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.269 -0.131 0.119 -14.531 -6.591 -1.223 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.085 -0.132 0.346 6.886 -4.979 2.681 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.013 -0.228 0.386 7.940 -16.892 -3.392 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.298 -0.216 -0.259 10.333 23.173 -3.181 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.297 -0.053 3.074 -4.368 6.094 33.973 -0.968 -0.134 3.033 10.275 7.364 34.766 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.592 0.358 3.577 4.160 -6.192 41.033 1.218 -0.352 3.530 -8.746 -5.876 41.677 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.103 0.122 2.963 -0.121 7.411 24.698 -1.619 0.200 2.877 16.848 0.275 25.770 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.630 0.161 3.444 -0.710 1.525 39.522 0.049 0.842 3.458 2.255 1.050 39.556 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.162 -0.314 3.312 -1.274 0.761 37.674 -0.586 -0.417 3.298 1.177 1.973 37.702 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.048 -0.639 3.253 -0.012 -2.534 31.961 -0.700 -0.090 3.293 -4.594 0.022 32.058 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.082 -0.420 3.230 2.024 -0.519 34.457 -0.629 0.448 3.226 -0.875 -3.414 34.518 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.207 -0.247 3.528 -0.963 -1.675 43.026 -0.158 0.180 3.538 -2.283 1.312 43.067 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.634 0.581 2.900 -3.870 2.157 24.789 0.776 -2.452 2.809 4.974 8.925 25.176 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.241 0.278 3.428 -5.296 -9.944 42.084 1.396 1.131 3.405 -13.558 7.221 43.500 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.872 0.458 3.785 5.492 -17.530 34.748 3.103 -0.543 3.292 -27.135 -8.501 39.172 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI08761 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'COBALT (II) ION' CO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8BNA _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #