HEADER DNA BINDING PROTEIN 15-MAR-18 6CQO TITLE CRYSTAL STRUCTURE OF MITOCHONDRIAL SINGLE-STRANDED DNA BINDING TITLE 2 PROTEINS FROM S. CEREVISIAE (SEMET LABELED), RIM1 (FORM2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN RIM1, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: RESIDUES 17-135; COMPND 5 SYNONYM: MITOCHONDRIAL SSDNA-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RIM1, YCR028C-A, YCR28C-A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIAL SINGLE-STRANDED DNA BINDING PROTEINS, RIM1, S. KEYWDS 2 CEREVISIAE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.SINGH,V.KUKSHAL,P.D.BONA,A.K.LYTLE,A.EDWIN,R.GALLETTO REVDAT 6 26-FEB-20 6CQO 1 REMARK REVDAT 5 01-JAN-20 6CQO 1 REMARK REVDAT 4 20-FEB-19 6CQO 1 REMARK REVDAT 3 05-SEP-18 6CQO 1 JRNL REVDAT 2 04-JUL-18 6CQO 1 JRNL REVDAT 1 30-MAY-18 6CQO 0 JRNL AUTH S.P.SINGH,V.KUKSHAL,P.DE BONA,E.ANTONY,R.GALLETTO JRNL TITL THE MITOCHONDRIAL SINGLE-STRANDED DNA BINDING PROTEIN FROM JRNL TITL 2 S. CEREVISIAE, RIM1, DOES NOT FORM STABLE HOMO-TETRAMERS AND JRNL TITL 3 BINDS DNA AS A DIMER OF DIMERS. JRNL REF NUCLEIC ACIDS RES. V. 46 7193 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29931186 JRNL DOI 10.1093/NAR/GKY530 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.0011 - 5.8229 1.00 2647 147 0.2411 0.2962 REMARK 3 2 5.8229 - 4.6222 1.00 2542 124 0.2002 0.2570 REMARK 3 3 4.6222 - 4.0381 1.00 2504 123 0.1823 0.1949 REMARK 3 4 4.0381 - 3.6689 1.00 2491 129 0.2102 0.2760 REMARK 3 5 3.6689 - 3.4060 1.00 2468 150 0.2172 0.3031 REMARK 3 6 3.4060 - 3.2052 1.00 2480 124 0.2387 0.2950 REMARK 3 7 3.2052 - 3.0446 1.00 2426 156 0.2627 0.3151 REMARK 3 8 3.0446 - 2.9121 1.00 2457 124 0.2686 0.3112 REMARK 3 9 2.9121 - 2.8000 1.00 2450 118 0.2958 0.3417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6154 REMARK 3 ANGLE : 0.417 8291 REMARK 3 CHIRALITY : 0.042 913 REMARK 3 PLANARITY : 0.003 1059 REMARK 3 DIHEDRAL : 12.253 3656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 62.985 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.70 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2 AND 20% (W/V) PEG 3350, PH REMARK 280 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.14150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.24200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.78800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.24200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.14150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.78800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -40.14150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 50.78800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 228.96800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 40 REMARK 465 PHE A 95 REMARK 465 GLU A 96 REMARK 465 ARG A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 SER A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 121 REMARK 465 LEU A 122 REMARK 465 GLU A 123 REMARK 465 ASP A 124 REMARK 465 ALA A 125 REMARK 465 GLU A 126 REMARK 465 GLY A 127 REMARK 465 GLN A 128 REMARK 465 GLU A 129 REMARK 465 ASN A 130 REMARK 465 ALA A 131 REMARK 465 ALA A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 GLU A 135 REMARK 465 THR B 36 REMARK 465 SER B 37 REMARK 465 ALA B 38 REMARK 465 ASN B 39 REMARK 465 ASN B 40 REMARK 465 ASN B 41 REMARK 465 ARG B 53 REMARK 465 ARG B 54 REMARK 465 ASP B 55 REMARK 465 GLY B 56 REMARK 465 GLN B 57 REMARK 465 LEU B 122 REMARK 465 GLU B 123 REMARK 465 ASP B 124 REMARK 465 ALA B 125 REMARK 465 GLU B 126 REMARK 465 GLY B 127 REMARK 465 GLN B 128 REMARK 465 GLU B 129 REMARK 465 ASN B 130 REMARK 465 ALA B 131 REMARK 465 ALA B 132 REMARK 465 SER B 133 REMARK 465 SER B 134 REMARK 465 GLU B 135 REMARK 465 MSE C 17 REMARK 465 SER C 37 REMARK 465 ALA C 38 REMARK 465 ASN C 39 REMARK 465 ASN C 40 REMARK 465 ASN C 41 REMARK 465 GLU C 96 REMARK 465 ARG C 97 REMARK 465 ASP C 98 REMARK 465 ASP C 99 REMARK 465 GLY C 100 REMARK 465 LYS C 121 REMARK 465 LEU C 122 REMARK 465 GLU C 123 REMARK 465 ASP C 124 REMARK 465 ALA C 125 REMARK 465 GLU C 126 REMARK 465 GLY C 127 REMARK 465 GLN C 128 REMARK 465 GLU C 129 REMARK 465 ASN C 130 REMARK 465 ALA C 131 REMARK 465 ALA C 132 REMARK 465 SER C 133 REMARK 465 SER C 134 REMARK 465 GLU C 135 REMARK 465 ASN D 39 REMARK 465 ASN D 40 REMARK 465 ARG D 54 REMARK 465 SER D 101 REMARK 465 LYS D 120 REMARK 465 LYS D 121 REMARK 465 LEU D 122 REMARK 465 GLU D 123 REMARK 465 ASP D 124 REMARK 465 ALA D 125 REMARK 465 GLU D 126 REMARK 465 GLY D 127 REMARK 465 GLN D 128 REMARK 465 GLU D 129 REMARK 465 ASN D 130 REMARK 465 ALA D 131 REMARK 465 ALA D 132 REMARK 465 SER D 133 REMARK 465 SER D 134 REMARK 465 GLU D 135 REMARK 465 VAL E 94 REMARK 465 PHE E 95 REMARK 465 GLU E 96 REMARK 465 ARG E 97 REMARK 465 ASP E 98 REMARK 465 ASP E 99 REMARK 465 GLY E 100 REMARK 465 SER E 101 REMARK 465 LYS E 102 REMARK 465 GLY E 103 REMARK 465 LYS E 121 REMARK 465 LEU E 122 REMARK 465 GLU E 123 REMARK 465 ASP E 124 REMARK 465 ALA E 125 REMARK 465 GLU E 126 REMARK 465 GLY E 127 REMARK 465 GLN E 128 REMARK 465 GLU E 129 REMARK 465 ASN E 130 REMARK 465 ALA E 131 REMARK 465 ALA E 132 REMARK 465 SER E 133 REMARK 465 SER E 134 REMARK 465 GLU E 135 REMARK 465 THR F 36 REMARK 465 SER F 37 REMARK 465 ALA F 38 REMARK 465 ASN F 39 REMARK 465 ASN F 40 REMARK 465 ASN F 41 REMARK 465 ARG F 54 REMARK 465 ASP F 55 REMARK 465 LYS F 120 REMARK 465 LYS F 121 REMARK 465 LEU F 122 REMARK 465 GLU F 123 REMARK 465 ASP F 124 REMARK 465 ALA F 125 REMARK 465 GLU F 126 REMARK 465 GLY F 127 REMARK 465 GLN F 128 REMARK 465 GLU F 129 REMARK 465 ASN F 130 REMARK 465 ALA F 131 REMARK 465 ALA F 132 REMARK 465 SER F 133 REMARK 465 SER F 134 REMARK 465 GLU F 135 REMARK 465 THR G 36 REMARK 465 SER G 37 REMARK 465 ALA G 38 REMARK 465 ASN G 39 REMARK 465 ASN G 40 REMARK 465 ASN G 41 REMARK 465 ARG G 42 REMARK 465 GLU G 96 REMARK 465 ARG G 97 REMARK 465 ASP G 98 REMARK 465 ASP G 99 REMARK 465 GLY G 100 REMARK 465 SER G 101 REMARK 465 LYS G 102 REMARK 465 LYS G 120 REMARK 465 LYS G 121 REMARK 465 LEU G 122 REMARK 465 GLU G 123 REMARK 465 ASP G 124 REMARK 465 ALA G 125 REMARK 465 GLU G 126 REMARK 465 GLY G 127 REMARK 465 GLN G 128 REMARK 465 GLU G 129 REMARK 465 ASN G 130 REMARK 465 ALA G 131 REMARK 465 ALA G 132 REMARK 465 SER G 133 REMARK 465 SER G 134 REMARK 465 GLU G 135 REMARK 465 TYR H 93 REMARK 465 VAL H 94 REMARK 465 PHE H 95 REMARK 465 GLU H 96 REMARK 465 ARG H 97 REMARK 465 ASP H 98 REMARK 465 ASP H 99 REMARK 465 GLY H 100 REMARK 465 SER H 101 REMARK 465 LYS H 102 REMARK 465 GLY H 103 REMARK 465 THR H 104 REMARK 465 LYS H 120 REMARK 465 LYS H 121 REMARK 465 LEU H 122 REMARK 465 GLU H 123 REMARK 465 ASP H 124 REMARK 465 ALA H 125 REMARK 465 GLU H 126 REMARK 465 GLY H 127 REMARK 465 GLN H 128 REMARK 465 GLU H 129 REMARK 465 ASN H 130 REMARK 465 ALA H 131 REMARK 465 ALA H 132 REMARK 465 SER H 133 REMARK 465 SER H 134 REMARK 465 GLU H 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 TYR B 93 OE1 GLN F 57 1.77 REMARK 500 N ASN B 92 OD1 ASN F 59 1.81 REMARK 500 CD1 TYR B 93 OE1 GLN F 57 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 53 125.77 68.48 REMARK 500 GLU D 68 -71.14 -57.01 REMARK 500 HIS E 35 -157.24 -140.69 REMARK 500 ASN E 40 71.86 58.00 REMARK 500 TYR E 77 -50.56 -122.58 REMARK 500 SER F 20 83.73 -151.89 REMARK 500 GLN F 57 131.05 -38.24 REMARK 500 SER G 20 85.41 -152.84 REMARK 500 SER H 37 -166.30 -122.67 REMARK 500 TYR H 77 -37.89 -132.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CQO A 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO B 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO C 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO D 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO E 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO F 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO G 17 135 UNP P32445 RIM1_YEAST 17 135 DBREF 6CQO H 17 135 UNP P32445 RIM1_YEAST 17 135 SEQRES 1 A 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 A 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 A 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 A 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 A 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 A 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 A 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 A 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 A 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 A 119 SER GLU SEQRES 1 B 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 B 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 B 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 B 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 B 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 B 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 B 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 B 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 B 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 B 119 SER GLU SEQRES 1 C 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 C 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 C 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 C 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 C 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 C 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 C 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 C 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 C 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 C 119 SER GLU SEQRES 1 D 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 D 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 D 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 D 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 D 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 D 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 D 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 D 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 D 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 D 119 SER GLU SEQRES 1 E 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 E 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 E 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 E 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 E 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 E 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 E 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 E 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 E 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 E 119 SER GLU SEQRES 1 F 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 F 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 F 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 F 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 F 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 F 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 F 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 F 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 F 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 F 119 SER GLU SEQRES 1 G 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 G 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 G 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 G 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 G 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 G 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 G 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 G 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 G 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 G 119 SER GLU SEQRES 1 H 119 MSE ASP PHE SER LYS MSE SER ILE VAL GLY ARG ILE GLY SEQRES 2 H 119 SER GLU PHE THR GLU HIS THR SER ALA ASN ASN ASN ARG SEQRES 3 H 119 TYR LEU LYS TYR SER ILE ALA SER GLN PRO ARG ARG ASP SEQRES 4 H 119 GLY GLN THR ASN TRP TYR ASN ILE THR VAL PHE ASN GLU SEQRES 5 H 119 PRO GLN ILE ASN PHE LEU THR GLU TYR VAL ARG LYS GLY SEQRES 6 H 119 ALA LEU VAL TYR VAL GLU ALA ASP ALA ALA ASN TYR VAL SEQRES 7 H 119 PHE GLU ARG ASP ASP GLY SER LYS GLY THR THR LEU SER SEQRES 8 H 119 LEU VAL GLN LYS ASP ILE ASN LEU LEU LYS ASN GLY LYS SEQRES 9 H 119 LYS LEU GLU ASP ALA GLU GLY GLN GLU ASN ALA ALA SER SEQRES 10 H 119 SER GLU MODRES 6CQO MSE A 17 MET MODIFIED RESIDUE MODRES 6CQO MSE A 22 MET MODIFIED RESIDUE MODRES 6CQO MSE B 17 MET MODIFIED RESIDUE MODRES 6CQO MSE B 22 MET MODIFIED RESIDUE MODRES 6CQO MSE C 22 MET MODIFIED RESIDUE MODRES 6CQO MSE D 17 MET MODIFIED RESIDUE MODRES 6CQO MSE D 22 MET MODIFIED RESIDUE MODRES 6CQO MSE E 17 MET MODIFIED RESIDUE MODRES 6CQO MSE E 22 MET MODIFIED RESIDUE MODRES 6CQO MSE F 17 MET MODIFIED RESIDUE MODRES 6CQO MSE F 22 MET MODIFIED RESIDUE MODRES 6CQO MSE G 17 MET MODIFIED RESIDUE MODRES 6CQO MSE G 22 MET MODIFIED RESIDUE MODRES 6CQO MSE H 17 MET MODIFIED RESIDUE MODRES 6CQO MSE H 22 MET MODIFIED RESIDUE HET MSE A 17 8 HET MSE A 22 8 HET MSE B 17 8 HET MSE B 22 8 HET MSE C 22 8 HET MSE D 17 8 HET MSE D 22 8 HET MSE E 17 8 HET MSE E 22 8 HET MSE F 17 8 HET MSE F 22 8 HET MSE G 17 8 HET MSE G 22 8 HET MSE H 17 8 HET MSE H 22 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 9 HOH *46(H2 O) HELIX 1 AA1 ASN A 67 VAL A 78 1 12 HELIX 2 AA2 ASN B 67 TYR B 77 1 11 HELIX 3 AA3 ASN C 67 TYR C 77 1 11 HELIX 4 AA4 ASN D 67 VAL D 78 1 12 HELIX 5 AA5 ASN E 67 TYR E 77 1 11 HELIX 6 AA6 ASN F 67 TYR F 77 1 11 HELIX 7 AA7 ASN G 67 VAL G 78 1 12 HELIX 8 AA8 ASN H 67 VAL H 78 1 12 SHEET 1 AA1 6 THR A 33 THR A 36 0 SHEET 2 AA1 6 ARG A 42 SER A 50 -1 O TYR A 43 N HIS A 35 SHEET 3 AA1 6 ASN A 59 VAL A 65 -1 O ASN A 59 N SER A 50 SHEET 4 AA1 6 THR A 105 LYS A 117 1 O GLN A 110 N THR A 64 SHEET 5 AA1 6 LEU A 83 TYR A 93 -1 N LEU A 83 O LYS A 117 SHEET 6 AA1 6 PHE A 19 ILE A 28 -1 N SER A 20 O ALA A 90 SHEET 1 AA2 9 THR A 33 THR A 36 0 SHEET 2 AA2 9 ARG A 42 SER A 50 -1 O TYR A 43 N HIS A 35 SHEET 3 AA2 9 PHE A 19 ILE A 28 -1 N ARG A 27 O ALA A 49 SHEET 4 AA2 9 PHE G 19 ILE G 28 -1 O SER G 23 N LYS A 21 SHEET 5 AA2 9 LEU G 44 SER G 50 -1 O ALA G 49 N ARG G 27 SHEET 6 AA2 9 ASN G 59 VAL G 65 -1 O ASN G 59 N SER G 50 SHEET 7 AA2 9 THR G 105 LYS G 117 1 O LEU G 108 N THR G 64 SHEET 8 AA2 9 LEU G 83 TYR G 93 -1 N GLU G 87 O LYS G 111 SHEET 9 AA2 9 PHE G 19 ILE G 28 -1 N SER G 20 O ALA G 90 SHEET 1 AA3 6 THR B 33 GLU B 34 0 SHEET 2 AA3 6 LEU B 44 SER B 50 -1 O LYS B 45 N THR B 33 SHEET 3 AA3 6 ASN B 59 VAL B 65 -1 O ILE B 63 N TYR B 46 SHEET 4 AA3 6 LYS B 102 LYS B 117 1 O LEU B 108 N THR B 64 SHEET 5 AA3 6 LEU B 83 GLU B 96 -1 N ALA B 91 O SER B 107 SHEET 6 AA3 6 PHE B 19 ILE B 28 -1 N MSE B 22 O ALA B 88 SHEET 1 AA4 6 THR B 33 GLU B 34 0 SHEET 2 AA4 6 LEU B 44 SER B 50 -1 O LYS B 45 N THR B 33 SHEET 3 AA4 6 PHE B 19 ILE B 28 -1 N ARG B 27 O ALA B 49 SHEET 4 AA4 6 PHE F 19 ILE F 28 -1 O VAL F 25 N PHE B 19 SHEET 5 AA4 6 LEU F 44 SER F 50 -1 O ALA F 49 N ARG F 27 SHEET 6 AA4 6 THR F 33 GLU F 34 -1 N THR F 33 O LYS F 45 SHEET 1 AA5 7 THR F 33 GLU F 34 0 SHEET 2 AA5 7 LEU F 44 SER F 50 -1 O LYS F 45 N THR F 33 SHEET 3 AA5 7 ASN F 59 VAL F 65 -1 O ILE F 63 N TYR F 46 SHEET 4 AA5 7 THR F 104 LYS F 117 1 O LEU F 108 N THR F 64 SHEET 5 AA5 7 LEU F 83 VAL F 94 -1 N ALA F 91 O SER F 107 SHEET 6 AA5 7 PHE F 19 ILE F 28 -1 N ILE F 24 O VAL F 86 SHEET 7 AA5 7 PHE B 19 ILE B 28 -1 N PHE B 19 O VAL F 25 SHEET 1 AA6 6 THR C 33 HIS C 35 0 SHEET 2 AA6 6 TYR C 43 SER C 50 -1 O TYR C 43 N HIS C 35 SHEET 3 AA6 6 ASN C 59 VAL C 65 -1 O ILE C 63 N TYR C 46 SHEET 4 AA6 6 GLY C 103 LYS C 117 1 O LEU C 108 N THR C 64 SHEET 5 AA6 6 LEU C 83 PHE C 95 -1 N GLU C 87 O LYS C 111 SHEET 6 AA6 6 PHE C 19 ILE C 28 -1 N SER C 20 O ALA C 90 SHEET 1 AA7 6 THR C 33 HIS C 35 0 SHEET 2 AA7 6 TYR C 43 SER C 50 -1 O TYR C 43 N HIS C 35 SHEET 3 AA7 6 PHE C 19 ILE C 28 -1 N ARG C 27 O ALA C 49 SHEET 4 AA7 6 PHE D 19 ILE D 28 -1 O LYS D 21 N SER C 23 SHEET 5 AA7 6 ARG D 42 SER D 50 -1 O ALA D 49 N ARG D 27 SHEET 6 AA7 6 THR D 33 THR D 36 -1 N HIS D 35 O TYR D 43 SHEET 1 AA8 7 THR D 33 THR D 36 0 SHEET 2 AA8 7 ARG D 42 SER D 50 -1 O TYR D 43 N HIS D 35 SHEET 3 AA8 7 ASN D 59 VAL D 65 -1 O ASN D 59 N SER D 50 SHEET 4 AA8 7 THR D 104 LYS D 117 1 O GLN D 110 N THR D 64 SHEET 5 AA8 7 LEU D 83 VAL D 94 -1 N GLU D 87 O LYS D 111 SHEET 6 AA8 7 PHE D 19 ILE D 28 -1 N SER D 20 O ALA D 90 SHEET 7 AA8 7 PHE C 19 ILE C 28 -1 N SER C 23 O LYS D 21 SHEET 1 AA9 3 LYS E 21 ARG E 27 0 SHEET 2 AA9 3 LEU E 83 ASN E 92 -1 O VAL E 86 N ILE E 24 SHEET 3 AA9 3 LEU E 106 LYS E 117 -1 O LYS E 117 N LEU E 83 SHEET 1 AB1 3 THR E 33 GLU E 34 0 SHEET 2 AB1 3 LEU E 44 SER E 50 -1 O LYS E 45 N THR E 33 SHEET 3 AB1 3 ASN E 59 VAL E 65 -1 O ASN E 59 N SER E 50 SHEET 1 AB2 7 THR H 33 HIS H 35 0 SHEET 2 AB2 7 TYR H 43 SER H 50 -1 O TYR H 43 N HIS H 35 SHEET 3 AB2 7 ASN H 59 VAL H 65 -1 O ASN H 59 N SER H 50 SHEET 4 AB2 7 SER H 107 LYS H 117 1 O LEU H 108 N THR H 64 SHEET 5 AB2 7 LEU H 83 ALA H 91 -1 N ALA H 91 O SER H 107 SHEET 6 AB2 7 LYS H 21 ILE H 28 -1 N ILE H 24 O VAL H 86 SHEET 7 AB2 7 TYR H 43 SER H 50 -1 O ALA H 49 N ARG H 27 LINK C MSE A 17 N ASP A 18 1555 1555 1.33 LINK C LYS A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N SER A 23 1555 1555 1.33 LINK C MSE B 17 N ASP B 18 1555 1555 1.33 LINK C LYS B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N SER B 23 1555 1555 1.33 LINK C LYS C 21 N MSE C 22 1555 1555 1.33 LINK C MSE C 22 N SER C 23 1555 1555 1.33 LINK C MSE D 17 N ASP D 18 1555 1555 1.33 LINK C LYS D 21 N MSE D 22 1555 1555 1.33 LINK C MSE D 22 N SER D 23 1555 1555 1.33 LINK C MSE E 17 N ASP E 18 1555 1555 1.33 LINK C LYS E 21 N MSE E 22 1555 1555 1.33 LINK C MSE E 22 N SER E 23 1555 1555 1.33 LINK C MSE F 17 N ASP F 18 1555 1555 1.33 LINK C LYS F 21 N MSE F 22 1555 1555 1.33 LINK C MSE F 22 N SER F 23 1555 1555 1.33 LINK C MSE G 17 N ASP G 18 1555 1555 1.33 LINK C LYS G 21 N MSE G 22 1555 1555 1.33 LINK C MSE G 22 N SER G 23 1555 1555 1.33 LINK C MSE H 17 N ASP H 18 1555 1555 1.33 LINK C LYS H 21 N MSE H 22 1555 1555 1.33 LINK C MSE H 22 N SER H 23 1555 1555 1.33 CRYST1 80.283 101.576 114.484 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008735 0.00000 HETATM 1 N MSE A 17 23.318 -14.740 157.428 1.00 65.43 N HETATM 2 CA MSE A 17 22.077 -14.657 158.190 1.00 64.37 C HETATM 3 C MSE A 17 20.964 -14.023 157.363 1.00 65.51 C HETATM 4 O MSE A 17 20.079 -14.713 156.858 1.00 61.54 O HETATM 5 CB MSE A 17 22.293 -13.860 159.478 1.00 88.87 C HETATM 6 CG MSE A 17 21.918 -14.606 160.752 1.00 94.72 C HETATM 7 SE MSE A 17 20.125 -15.376 160.700 1.00153.04 SE HETATM 8 CE MSE A 17 20.592 -17.216 160.250 1.00 65.98 C