HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAR-18 6CRG TITLE CRYSTAL STRUCTURE OF SHP2 E76K GOF MUTANT IN COMPLEX WITH SHP099 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 5 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: STAR KEYWDS SHP2, PTPN11, PROTEIN TYROSINE PHOSPHATASE, E76K, GAIN OF FUNCTION KEYWDS 2 MUTANT, ALLOSTERIC INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, KEYWDS 3 PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR T.STAMS,M.FODOR REVDAT 2 04-OCT-23 6CRG 1 REMARK REVDAT 1 07-NOV-18 6CRG 0 JRNL AUTH J.R.LAROCHELLE,M.FODOR,V.VEMULAPALLI,M.MOHSENI,P.WANG, JRNL AUTH 2 T.STAMS,M.J.LAMARCHE,R.CHOPRA,M.G.ACKER,S.C.BLACKLOW JRNL TITL STRUCTURAL REORGANIZATION OF SHP2 BY ONCOGENIC MUTATIONS AND JRNL TITL 2 IMPLICATIONS FOR ONCOPROTEIN RESISTANCE TO ALLOSTERIC JRNL TITL 3 INHIBITION. JRNL REF NAT COMMUN V. 9 4508 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30375388 JRNL DOI 10.1038/S41467-018-06823-9 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2731 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2374 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2603 REMARK 3 BIN R VALUE (WORKING SET) : 0.2331 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.69 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.26520 REMARK 3 B22 (A**2) : 18.82440 REMARK 3 B33 (A**2) : 3.44080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 13.72750 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.355 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7849 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10593 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2786 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 209 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1112 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7849 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 981 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8619 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 107.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 2SHP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 30% PEG 4000, AND REMARK 280 0.2 M LISO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 107.04400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 LYS A 35 REMARK 465 SER A 36 REMARK 465 ASN A 37 REMARK 465 PRO A 38 REMARK 465 GLY A 39 REMARK 465 HIS A 85 REMARK 465 GLY A 86 REMARK 465 GLN A 87 REMARK 465 LEU A 88 REMARK 465 LYS A 89 REMARK 465 GLU A 90 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 ASP A 296 REMARK 465 PRO A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 313 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 LYS A 324 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ARG B 23 REMARK 465 TYR B 66 REMARK 465 GLY B 67 REMARK 465 GLY B 68 REMARK 465 GLU B 69 REMARK 465 HIS B 85 REMARK 465 GLY B 86 REMARK 465 GLN B 87 REMARK 465 LEU B 88 REMARK 465 LYS B 89 REMARK 465 GLU B 90 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 GLY B 93 REMARK 465 ASP B 94 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 ASP B 294 REMARK 465 GLY B 295 REMARK 465 ASP B 296 REMARK 465 PRO B 297 REMARK 465 ASN B 298 REMARK 465 GLU B 299 REMARK 465 PRO B 300 REMARK 465 GLU B 313 REMARK 465 PHE B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 465 LYS B 324 REMARK 465 LYS B 358 REMARK 465 GLU B 359 REMARK 465 VAL B 360 REMARK 465 GLU B 361 REMARK 465 ARG B 362 REMARK 465 GLY B 363 REMARK 465 LYS B 364 REMARK 465 SER B 365 REMARK 465 LYS B 366 REMARK 465 CYS B 367 REMARK 465 VAL B 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 -60.50 -107.79 REMARK 500 GLU A 83 -19.08 -163.11 REMARK 500 LYS A 99 -69.32 -104.06 REMARK 500 HIS A 116 98.27 -66.28 REMARK 500 SER A 142 -73.31 -71.68 REMARK 500 ASN A 161 3.03 -151.04 REMARK 500 VAL A 181 37.29 -97.34 REMARK 500 ASN A 200 78.38 -117.06 REMARK 500 LEU A 212 72.85 -100.95 REMARK 500 TYR A 375 -4.35 76.95 REMARK 500 ARG A 421 10.89 -141.21 REMARK 500 CYS A 459 -162.28 -129.03 REMARK 500 SER A 460 -84.06 -47.71 REMARK 500 VAL A 505 102.36 75.47 REMARK 500 ASN B 10 43.31 -98.29 REMARK 500 LEU B 177 -2.24 67.69 REMARK 500 LEU B 212 65.14 -102.94 REMARK 500 CYS B 333 150.32 -49.08 REMARK 500 TYR B 375 -4.87 71.58 REMARK 500 ASP B 451 -6.09 84.19 REMARK 500 CYS B 459 -118.27 -134.56 REMARK 500 SER B 460 -63.73 -102.89 REMARK 500 VAL B 505 97.99 82.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 748 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 749 DISTANCE = 6.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CRF RELATED DB: PDB REMARK 900 ANOTHER PDB ENTRY FROM THE SAME CITATION DBREF 6CRG A 1 525 UNP Q06124 PTN11_HUMAN 1 525 DBREF 6CRG B 1 525 UNP Q06124 PTN11_HUMAN 1 525 SEQADV 6CRG GLY A 0 UNP Q06124 EXPRESSION TAG SEQADV 6CRG LYS A 76 UNP Q06124 GLU 76 ENGINEERED MUTATION SEQADV 6CRG GLY B 0 UNP Q06124 EXPRESSION TAG SEQADV 6CRG LYS B 76 UNP Q06124 GLU 76 ENGINEERED MUTATION SEQRES 1 A 526 GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 A 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 A 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 A 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 A 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 A 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA LYS LEU SEQRES 7 A 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 A 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 A 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 A 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 A 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 A 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 A 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 A 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 A 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 A 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 A 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 A 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 A 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 A 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 A 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 A 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 A 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 A 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 A 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 A 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 A 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 A 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 A 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 A 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 A 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 A 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 A 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 A 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 A 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 A 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 A 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 A 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 A 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 A 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 A 526 HIS TYR ILE GLU THR LEU SEQRES 1 B 526 GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 B 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 B 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 B 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 B 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 B 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA LYS LEU SEQRES 7 B 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 B 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 B 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 B 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 B 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 B 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 B 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 B 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 B 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 B 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 B 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 B 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 B 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 B 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 B 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 B 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 B 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 B 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 B 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 B 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 B 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 B 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 B 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 B 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 B 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 B 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 B 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 B 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 B 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 B 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 B 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 B 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 B 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 B 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 B 526 HIS TYR ILE GLU THR LEU HET 5OD A 601 23 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET GOL A 606 6 HET 5OD B 601 23 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HETNAM 5OD 6-(4-AZANYL-4-METHYL-PIPERIDIN-1-YL)-3-[2,3- HETNAM 2 5OD BIS(CHLORANYL)PHENYL]PYRAZIN-2-AMINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN 5OD SHP099 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 5OD 2(C16 H19 CL2 N5) FORMUL 4 SO4 8(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 14 HOH *92(H2 O) HELIX 1 AA1 THR A 12 ARG A 23 1 12 HELIX 2 AA2 THR A 73 TYR A 81 1 9 HELIX 3 AA3 SER A 118 LYS A 129 1 12 HELIX 4 AA4 SER A 189 ASN A 200 1 12 HELIX 5 AA5 GLU A 225 LYS A 235 1 11 HELIX 6 AA6 GLY A 246 GLN A 256 1 11 HELIX 7 AA7 GLN A 257 LEU A 262 5 6 HELIX 8 AA8 ARG A 265 ARG A 270 1 6 HELIX 9 AA9 GLN A 271 ASN A 277 5 7 HELIX 10 AB1 LEU A 334 ASN A 336 5 3 HELIX 11 AB2 THR A 337 GLU A 348 1 12 HELIX 12 AB3 PRO A 432 ILE A 449 1 18 HELIX 13 AB4 ILE A 463 LYS A 482 1 20 HELIX 14 AB5 ASP A 489 SER A 499 1 11 HELIX 15 AB6 THR A 507 THR A 524 1 18 HELIX 16 AB7 THR B 12 THR B 22 1 11 HELIX 17 AB8 THR B 73 MET B 82 1 10 HELIX 18 AB9 SER B 118 LYS B 129 1 12 HELIX 19 AC1 SER B 189 ASN B 200 1 12 HELIX 20 AC2 GLU B 225 LYS B 235 1 11 HELIX 21 AC3 GLY B 246 GLN B 256 1 11 HELIX 22 AC4 GLN B 257 LEU B 262 5 6 HELIX 23 AC5 ARG B 265 ARG B 270 1 6 HELIX 24 AC6 ARG B 270 ASN B 275 1 6 HELIX 25 AC7 THR B 337 ASN B 349 1 13 HELIX 26 AC8 PRO B 432 ILE B 449 1 18 HELIX 27 AC9 ILE B 463 GLY B 483 1 21 HELIX 28 AD1 ASP B 489 SER B 499 1 11 HELIX 29 AD2 THR B 507 THR B 524 1 18 SHEET 1 AA1 5 PHE A 29 ARG A 32 0 SHEET 2 AA1 5 PHE A 41 ARG A 46 -1 O THR A 42 N ARG A 32 SHEET 3 AA1 5 VAL A 51 ASN A 58 -1 O ILE A 56 N PHE A 41 SHEET 4 AA1 5 TYR A 63 LEU A 65 -1 O ASP A 64 N GLN A 57 SHEET 5 AA1 5 LYS A 70 PHE A 71 -1 O PHE A 71 N TYR A 63 SHEET 1 AA2 5 PHE A 113 HIS A 116 0 SHEET 2 AA2 5 SER A 134 GLU A 139 1 O GLU A 139 N GLY A 115 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 O SER A 150 N LEU A 136 SHEET 4 AA2 5 LYS A 166 GLN A 175 -1 O VAL A 170 N LEU A 149 SHEET 5 AA2 5 LYS A 178 ASP A 180 -1 O LYS A 178 N GLN A 175 SHEET 1 AA3 3 PHE A 113 HIS A 116 0 SHEET 2 AA3 3 SER A 134 GLU A 139 1 O GLU A 139 N GLY A 115 SHEET 3 AA3 3 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 AA4 2 MET A 202 VAL A 203 0 SHEET 2 AA4 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 AA5 2 ILE A 221 ASN A 222 0 SHEET 2 AA5 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA6 8 ALA A 307 ILE A 310 0 SHEET 2 AA6 8 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 3 AA6 8 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 4 AA6 8 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 5 AA6 8 ARG A 413 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 6 AA6 8 TYR A 396 LYS A 405 -1 N ARG A 399 O GLN A 417 SHEET 7 AA6 8 MET A 383 ALA A 392 -1 N LYS A 389 O GLU A 400 SHEET 8 AA6 8 LEU A 377 TYR A 380 -1 N LYS A 378 O VAL A 385 SHEET 1 AA7 2 VAL A 360 GLU A 361 0 SHEET 2 AA7 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 AA8 5 TYR B 63 ASP B 64 0 SHEET 2 AA8 5 ALA B 50 ASN B 58 -1 N GLN B 57 O ASP B 64 SHEET 3 AA8 5 PHE B 41 ARG B 47 -1 N VAL B 45 O THR B 52 SHEET 4 AA8 5 SER B 28 PRO B 33 -1 N ARG B 32 O THR B 42 SHEET 5 AA8 5 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA9 5 PHE B 113 HIS B 116 0 SHEET 2 AA9 5 SER B 134 GLU B 139 1 O VAL B 137 N HIS B 114 SHEET 3 AA9 5 PHE B 147 THR B 153 -1 O SER B 150 N LEU B 136 SHEET 4 AA9 5 LYS B 166 GLN B 175 -1 O VAL B 170 N LEU B 149 SHEET 5 AA9 5 LYS B 178 ASP B 180 -1 O ASP B 180 N ARG B 173 SHEET 1 AB1 3 PHE B 113 HIS B 116 0 SHEET 2 AB1 3 SER B 134 GLU B 139 1 O VAL B 137 N HIS B 114 SHEET 3 AB1 3 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 AB2 2 MET B 202 VAL B 203 0 SHEET 2 AB2 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 AB3 2 ILE B 221 ASN B 222 0 SHEET 2 AB3 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB4 9 ARG B 289 VAL B 291 0 SHEET 2 AB4 9 TYR B 304 ILE B 310 -1 O ALA B 307 N VAL B 290 SHEET 3 AB4 9 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 4 AB4 9 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 5 AB4 9 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 6 AB4 9 GLN B 408 PHE B 420 1 O TYR B 418 N ILE B 353 SHEET 7 AB4 9 TYR B 396 LYS B 405 -1 N THR B 397 O HIS B 419 SHEET 8 AB4 9 MET B 383 ALA B 392 -1 N ARG B 384 O SER B 404 SHEET 9 AB4 9 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 SITE 1 AC1 12 THR A 108 GLU A 110 ARG A 111 PHE A 113 SITE 2 AC1 12 THR A 219 GLU A 249 GLU A 250 THR A 253 SITE 3 AC1 12 LEU A 254 GLN A 257 PRO A 491 GLN A 495 SITE 1 AC2 5 LYS A 76 SER A 264 ARG A 265 LYS A 266 SITE 2 AC2 5 GLN A 269 SITE 1 AC3 2 ARG A 111 LYS A 198 SITE 1 AC4 4 CYS A 259 LYS A 260 LEU A 262 TYR A 263 SITE 1 AC5 3 LYS A 131 ASN A 217 ARG A 220 SITE 1 AC6 3 ARG A 351 ASN A 410 GLU A 412 SITE 1 AC7 13 THR B 108 GLU B 110 ARG B 111 PHE B 113 SITE 2 AC7 13 THR B 219 GLU B 249 GLU B 250 THR B 253 SITE 3 AC7 13 LEU B 254 GLN B 257 PRO B 491 LYS B 492 SITE 4 AC7 13 GLN B 495 SITE 1 AC8 5 LYS B 76 TYR B 263 SER B 264 ARG B 265 SITE 2 AC8 5 GLN B 269 SITE 1 AC9 6 ARG B 32 SER B 34 LYS B 35 SER B 36 SITE 2 AC9 6 THR B 42 MET B 311 SITE 1 AD1 5 ARG B 111 TRP B 112 LYS B 198 PRO B 215 SITE 2 AD1 5 GLN B 257 SITE 1 AD2 3 LYS B 260 LEU B 261 LEU B 262 CRYST1 45.436 214.088 55.540 90.00 95.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022009 0.000000 0.002181 0.00000 SCALE2 0.000000 0.004671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018093 0.00000