HEADER METAL TRANSPORT 19-MAR-18 6CRL TITLE HUSA HAEMOPHORE FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PG_2227; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS W83; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: ATCC BAA-308 / W83; SOURCE 5 ATCC: BAA-308 / W83; SOURCE 6 GENE: PG_2227; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: STRAIN B; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS HAEM BINDING PROTEIN, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR D.A.GELL,A.H.KWAN,J.HORNE,B.M.HUGRASS,D.A.T.COLLINS REVDAT 2 17-OCT-18 6CRL 1 COMPND JRNL REVDAT 1 10-OCT-18 6CRL 0 JRNL AUTH J.L.GAO,A.H.KWAN,A.YAMMINE,X.ZHOU,J.TREWHELLA,B.M.HUGRASS, JRNL AUTH 2 D.A.T.COLLINS,J.HORNE,P.YE,D.HARTY,K.A.NGUYEN,D.A.GELL, JRNL AUTH 3 N.HUNTER JRNL TITL STRUCTURAL PROPERTIES OF A HAEMOPHORE FACILITATE TARGETED JRNL TITL 2 ELIMINATION OF THE PATHOGEN PORPHYROMONAS GINGIVALIS. JRNL REF NAT COMMUN V. 9 4097 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30291238 JRNL DOI 10.1038/S41467-018-06470-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.45 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233193. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308; 298 REMARK 210 PH : 6.9; 6.9 REMARK 210 IONIC STRENGTH : 0.01; 0.01 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-13C; U-15N] HUSA, 95% REMARK 210 H2O/5% D2O; 1 MM NA HUSA, 100% REMARK 210 D2O; 1.5 MM [U-13C; U-15N] HUSA, REMARK 210 100% D2O; 1 MM NA HUSA, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D HBCBCGCDHD; 3D REMARK 210 HBCBCGCDHDCEHE; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H COSY; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3, SPARKY 3.115, CYANA REMARK 210 3.97 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 35 OD2 ASP A 53 1.56 REMARK 500 OD2 ASP A 174 HZ1 LYS A 175 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 26 13.91 55.02 REMARK 500 1 GLU A 85 32.35 -140.27 REMARK 500 1 PRO A 126 35.42 -79.38 REMARK 500 1 THR A 132 -60.08 -97.91 REMARK 500 1 PRO A 166 45.66 -83.06 REMARK 500 1 ALA A 167 -2.32 65.10 REMARK 500 1 VAL A 192 112.84 78.18 REMARK 500 1 ALA A 195 -45.81 -179.64 REMARK 500 2 PRO A 126 49.97 -82.70 REMARK 500 2 GLN A 127 -57.44 -133.23 REMARK 500 2 THR A 132 -69.11 -97.97 REMARK 500 2 PRO A 166 48.88 -82.14 REMARK 500 2 ALA A 167 -11.57 65.89 REMARK 500 2 THR A 191 -21.93 72.49 REMARK 500 2 VAL A 192 88.38 59.41 REMARK 500 2 ALA A 195 -42.90 179.28 REMARK 500 2 HIS A 199 18.56 -140.33 REMARK 500 2 VAL A 220 90.38 62.95 REMARK 500 3 ALA A 27 103.50 67.30 REMARK 500 3 ASN A 125 85.26 -155.35 REMARK 500 3 PRO A 126 37.49 -73.46 REMARK 500 3 THR A 132 -64.20 -99.78 REMARK 500 3 PRO A 166 49.71 -83.96 REMARK 500 3 ALA A 167 -26.34 67.45 REMARK 500 3 VAL A 192 102.26 65.50 REMARK 500 3 ALA A 195 -45.12 -173.57 REMARK 500 4 PRO A 126 44.11 -79.71 REMARK 500 4 THR A 132 -69.91 -94.32 REMARK 500 4 PRO A 166 49.16 -79.77 REMARK 500 4 ALA A 167 -30.94 68.18 REMARK 500 4 VAL A 192 102.52 63.67 REMARK 500 4 ALA A 195 -51.12 -165.08 REMARK 500 4 ALA A 214 -77.23 61.21 REMARK 500 4 GLU A 215 78.12 46.75 REMARK 500 5 SER A 63 -165.84 46.99 REMARK 500 5 GLU A 85 31.20 -144.47 REMARK 500 5 PRO A 126 33.54 -76.05 REMARK 500 5 THR A 132 -63.28 -101.74 REMARK 500 5 ALA A 167 -171.95 64.94 REMARK 500 5 GLN A 168 -50.34 73.82 REMARK 500 5 VAL A 192 90.60 55.52 REMARK 500 5 ALA A 195 -45.98 -167.86 REMARK 500 5 ALA A 214 176.41 58.20 REMARK 500 5 GLU A 215 139.32 66.92 REMARK 500 6 ALA A 27 88.61 63.70 REMARK 500 6 ASN A 125 85.74 -151.18 REMARK 500 6 PRO A 126 48.74 -80.31 REMARK 500 6 GLN A 127 -61.80 -128.97 REMARK 500 6 THR A 132 -71.10 -91.21 REMARK 500 6 ALA A 167 -32.65 69.31 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BQS RELATED DB: PDB REMARK 900 ALTERNATIVE CONFORMER REMARK 900 RELATED ID: 27313 RELATED DB: BMRB DBREF 6CRL A 24 218 UNP Q7MSY3 Q7MSY3_PORGI 24 218 SEQADV 6CRL MET A 22 UNP Q7MSY3 EXPRESSION TAG SEQADV 6CRL GLY A 23 UNP Q7MSY3 EXPRESSION TAG SEQADV 6CRL LEU A 219 UNP Q7MSY3 EXPRESSION TAG SEQADV 6CRL VAL A 220 UNP Q7MSY3 EXPRESSION TAG SEQADV 6CRL PRO A 221 UNP Q7MSY3 EXPRESSION TAG SEQADV 6CRL ARG A 222 UNP Q7MSY3 EXPRESSION TAG SEQRES 1 A 201 MET GLY GLN GLY THR ALA TYR ALA GLU VAL MET ASN ARG SEQRES 2 A 201 LYS VAL ALA ALA LEU ASP SER VAL PRO PRO THR GLU TYR SEQRES 3 A 201 ALA THR LEU ALA ALA ASP PHE SER ARG ILE ALA ALA VAL SEQRES 4 A 201 GLU GLY SER ASP TRP MET ALA ALA TYR TYR THR ALA TYR SEQRES 5 A 201 CYS ARG ILE ILE PRO ALA PHE GLY ASN PRO SER GLU ALA SEQRES 6 A 201 ASP ARG LEU CYS GLU GLU ALA GLU SER MET LEU SER LYS SEQRES 7 A 201 ALA GLU SER LEU GLY GLY ASP LEU SER GLU ILE ALA CYS SEQRES 8 A 201 LEU ARG SER MET ALA ALA SER ALA ARG LEU LEU VAL ASN SEQRES 9 A 201 PRO GLN GLU ARG TRP GLN THR TYR GLY ALA GLU SER SER SEQRES 10 A 201 ARG GLN LEU ALA VAL ALA LEU GLU ALA ASN PRO ALA ASN SEQRES 11 A 201 PRO ARG ALA TYR PHE LEU GLN ALA GLN SER LEU LEU TYR SEQRES 12 A 201 THR PRO ALA GLN PHE GLY GLY GLY LYS ASP LYS ALA LEU SEQRES 13 A 201 PRO PHE ALA GLU LYS SER VAL SER CYS TYR ALA ALA ALA SEQRES 14 A 201 THR VAL SER PRO ALA TYR ALA PRO HIS TRP GLY GLU GLN SEQRES 15 A 201 GLN ALA ARG GLN LEU LEU MET LEU CYS LYS ALA GLU THR SEQRES 16 A 201 GLN GLU LEU VAL PRO ARG HELIX 1 AA1 ALA A 27 VAL A 42 1 16 HELIX 2 AA2 PRO A 43 THR A 45 5 3 HELIX 3 AA3 GLU A 46 VAL A 60 1 15 HELIX 4 AA4 ASP A 64 GLY A 81 1 18 HELIX 5 AA5 GLU A 85 GLY A 104 1 20 HELIX 6 AA6 ASP A 106 LEU A 123 1 18 HELIX 7 AA7 THR A 132 ASN A 148 1 17 HELIX 8 AA8 ASN A 151 TYR A 164 1 14 HELIX 9 AA9 GLY A 172 ALA A 189 1 18 HELIX 10 AB1 GLY A 201 ALA A 214 1 14 CISPEP 1 SER A 193 PRO A 194 1 1.18 CISPEP 2 SER A 193 PRO A 194 2 -0.18 CISPEP 3 SER A 193 PRO A 194 3 1.08 CISPEP 4 SER A 193 PRO A 194 4 -0.01 CISPEP 5 SER A 193 PRO A 194 5 0.73 CISPEP 6 SER A 193 PRO A 194 6 0.67 CISPEP 7 SER A 193 PRO A 194 7 0.68 CISPEP 8 SER A 193 PRO A 194 8 0.30 CISPEP 9 SER A 193 PRO A 194 9 0.41 CISPEP 10 SER A 193 PRO A 194 10 0.95 CISPEP 11 SER A 193 PRO A 194 11 0.78 CISPEP 12 SER A 193 PRO A 194 12 1.50 CISPEP 13 SER A 193 PRO A 194 13 1.47 CISPEP 14 SER A 193 PRO A 194 14 -0.73 CISPEP 15 SER A 193 PRO A 194 15 -1.38 CISPEP 16 SER A 193 PRO A 194 16 0.31 CISPEP 17 SER A 193 PRO A 194 17 0.43 CISPEP 18 SER A 193 PRO A 194 18 0.85 CISPEP 19 SER A 193 PRO A 194 19 2.32 CISPEP 20 SER A 193 PRO A 194 20 0.58 CISPEP 21 SER A 193 PRO A 194 21 -0.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1