HEADER ANTIMICROBIAL PROTEIN 21-MAR-18 6CSZ TITLE TFE-INDUCED NMR STRUCTURE OF A NOVEL BIOACTIVE PEPTIDE (PADBS1R3) TITLE 2 DERIVED FROM A PYROBACULUM AEROPHILUM RIBOSOMAL PROTEIN (L39E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PADBS1R3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-18; COMPND 5 SYNONYM: 50S RIBOSOMAL PROTEIN L39E; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 4 ORGANISM_TAXID: 178306 KEYWDS ANTIMICROBIAL PEPTIDE, ANTIBIOTICS, BACTERIAL RESISTANCE, CATIONIC KEYWDS 2 PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.H.CARDOSO,L.Y.CHAN,E.S.CANDIDO,M.T.TORRES,K.G.N.OSHIRO,I.C.SILVA, AUTHOR 2 S.GONCALVES,D.F.BUCCINI,T.LU,N.C.SANTOS,C.DE LA FUENTE-NUNEZ, AUTHOR 3 D.J.CRAIK,O.L.FRANCO REVDAT 6 15-MAY-24 6CSZ 1 REMARK REVDAT 5 14-JUN-23 6CSZ 1 REMARK REVDAT 4 07-SEP-22 6CSZ 1 JRNL REVDAT 3 01-JAN-20 6CSZ 1 REMARK REVDAT 2 09-OCT-19 6CSZ 1 AUTHOR JRNL REVDAT 1 25-SEP-19 6CSZ 0 JRNL AUTH M.H.CARDOSO,L.Y.CHAN,E.S.CANDIDO,D.F.BUCCINI,S.B.REZENDE, JRNL AUTH 2 M.D.T.TORRES,K.G.N.OSHIRO,I.C.SILVA,S.GONCALVES,T.K.LU, JRNL AUTH 3 N.C.SANTOS,C.DE LA FUENTE-NUNEZ,D.J.CRAIK,O.L.FRANCO JRNL TITL AN N-CAPPING ASPARAGINE-LYSINE-PROLINE (NKP) MOTIF JRNL TITL 2 CONTRIBUTES TO A HYBRID FLEXIBLE/STABLE MULTIFUNCTIONAL JRNL TITL 3 PEPTIDE SCAFFOLD JRNL REF CHEM SCI V. 13 9410 2022 JRNL REFN ESSN 2041-6539 JRNL DOI 10.1039/D1SC06998E REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WITH SIMULATED ANNEALING; REFINEMENT IN REMARK 3 WATER REMARK 4 REMARK 4 6CSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233338. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM NA PADBS1R3, 30 % NA TFE, REMARK 210 60 % NA H2O, 10 % NA D2O, 10 % REMARK 210 NA DSS, TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, TALOS, CYANA, CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 MET A 2 79.84 63.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CSK RELATED DB: PDB REMARK 900 TFE-INDUCED NMR STRUCTURE OF A NOVEL BIOACTIVE PEPTIDE (PADBS1R2) REMARK 900 DERIVED FROM A PYROBACULUM AEROPHILUM RIBOSOMAL PROTEIN (L39E) REMARK 900 RELATED ID: 30440 RELATED DB: BMRB REMARK 900 TFE-INDUCED NMR STRUCTURE OF A NOVEL BIOACTIVE PEPTIDE (PADBS1R3) REMARK 900 DERIVED FROM A PYROBACULUM AEROPHILUM RIBOSOMAL PROTEIN (L39E) REMARK 900 RELATED ID: 6CT1 RELATED DB: PDB REMARK 900 TFE-INDUCED NMR STRUCTURE OF A NOVEL BIOACTIVE PEPTIDE (PADBS1R7) REMARK 900 DERIVED FROM A PYROBACULUM AEROPHILUM RIBOSOMAL PROTEIN (L39E) DBREF 6CSZ A 2 19 UNP Q8ZTX6 RL39_PYRAE 1 18 SEQADV 6CSZ PRO A 1 UNP Q8ZTX6 INSERTION SEQADV 6CSZ LYS A 4 UNP Q8ZTX6 ARG 3 ENGINEERED MUTATION SEQADV 6CSZ LEU A 5 UNP Q8ZTX6 ASN 4 ENGINEERED MUTATION SEQADV 6CSZ LEU A 6 UNP Q8ZTX6 LYS 5 ENGINEERED MUTATION SEQADV 6CSZ ARG A 8 UNP Q8ZTX6 LEU 7 ENGINEERED MUTATION SEQADV 6CSZ ILE A 9 UNP Q8ZTX6 GLY 8 ENGINEERED MUTATION SEQADV 6CSZ LYS A 12 UNP Q8ZTX6 LEU 11 ENGINEERED MUTATION SEQADV 6CSZ ILE A 13 UNP Q8ZTX6 ARG 12 ENGINEERED MUTATION SEQRES 1 A 19 PRO MET ALA LYS LEU LEU PRO ARG ILE LYS LYS LYS ILE SEQRES 2 A 19 LEU ALA ALA ALA PHE LYS HELIX 1 AA1 LYS A 4 PHE A 18 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1