data_6CU1 # _entry.id 6CU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CU1 pdb_00006cu1 10.2210/pdb6cu1/pdb WWPDB D_1000233226 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-31 2 'Structure model' 1 1 2018-12-19 3 'Structure model' 1 2 2019-12-18 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.value' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CU1 _pdbx_database_status.recvd_initial_deposition_date 2018-03-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, W.' 1 ? 'Chen, X.' 2 ? 'Wolin, S.L.' 3 ? 'Xiong, Y.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 1878-4186 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 1635 _citation.page_last ? _citation.title 'Structural Basis for tRNA Mimicry by a Bacterial Y RNA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2018.09.001 _citation.pdbx_database_id_PubMed 30318468 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, W.' 1 ? primary 'Chen, X.' 2 ? primary 'Wolin, S.L.' 3 ? primary 'Xiong, Y.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'YrlA effector-binding module' 26319.438 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GGUGGCUCUACAUUUGUUGCGGGUUCGAGACCCGUCAGAGCGAAAGCUCUGUAGCUCAAUGGUAGAGCGGUGUAG UCACC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGUGGCUCUACAUUUGUUGCGGGUUCGAGACCCGUCAGAGCGAAAGCUCUGUAGCUCAAUGGUAGAGCGGUGUAGUCAC C ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 U n 1 5 G n 1 6 G n 1 7 C n 1 8 U n 1 9 C n 1 10 U n 1 11 A n 1 12 C n 1 13 A n 1 14 U n 1 15 U n 1 16 U n 1 17 G n 1 18 U n 1 19 U n 1 20 G n 1 21 C n 1 22 G n 1 23 G n 1 24 G n 1 25 U n 1 26 U n 1 27 C n 1 28 G n 1 29 A n 1 30 G n 1 31 A n 1 32 C n 1 33 C n 1 34 C n 1 35 G n 1 36 U n 1 37 C n 1 38 A n 1 39 G n 1 40 A n 1 41 G n 1 42 C n 1 43 G n 1 44 A n 1 45 A n 1 46 A n 1 47 G n 1 48 C n 1 49 U n 1 50 C n 1 51 U n 1 52 G n 1 53 U n 1 54 A n 1 55 G n 1 56 C n 1 57 U n 1 58 C n 1 59 A n 1 60 A n 1 61 U n 1 62 G n 1 63 G n 1 64 U n 1 65 A n 1 66 G n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 G n 1 72 U n 1 73 G n 1 74 U n 1 75 A n 1 76 G n 1 77 U n 1 78 C n 1 79 A n 1 80 C n 1 81 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 81 _pdbx_entity_src_syn.organism_scientific 'Salmonella enterica subsp. enterica serovar Typhimurium' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 90371 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 ? ? ? A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 U 26 26 26 U U A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 G 47 47 47 G G A . n A 1 48 C 48 48 48 C C A . n A 1 49 U 49 49 49 U U A . n A 1 50 C 50 50 50 C C A . n A 1 51 U 51 51 51 U U A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 C 56 56 56 C C A . n A 1 57 U 57 57 57 U U A . n A 1 58 C 58 58 58 C C A . n A 1 59 A 59 59 59 A A A . n A 1 60 A 60 60 60 A A A . n A 1 61 U 61 61 61 U U A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 U 64 64 64 U U A . n A 1 65 A 65 65 65 A A A . n A 1 66 G 66 66 66 G G A . n A 1 67 A 67 67 67 A A A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 U 72 72 72 U U A . n A 1 73 G 73 73 73 G G A . n A 1 74 U 74 74 74 U U A . n A 1 75 A 75 75 75 A A A . n A 1 76 G 76 76 76 G G A . n A 1 77 U 77 77 77 U U A . n A 1 78 C 78 78 78 C C A . n A 1 79 A 79 79 79 A A A . n A 1 80 C 80 80 80 C C A . n A 1 81 C 81 81 81 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MO6 A . C 3 SO4 1 102 1 SO4 SO4 A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 1 HOH MO6 A . D 4 HOH 3 203 2 HOH HOH A . D 4 HOH 4 204 1 HOH MO6 A . D 4 HOH 5 205 1 HOH MO6 A . D 4 HOH 6 206 1 HOH MO6 A . D 4 HOH 7 207 1 HOH MO6 A . D 4 HOH 8 208 1 HOH MO6 A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6CU1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.409 _cell.length_a_esd ? _cell.length_b 147.108 _cell.length_b_esd ? _cell.length_c 101.564 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CU1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.22 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 70.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M sodium succinate, pH 5.5, 20 mM magnesium chloride, 3.0 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(220)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6CU1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9304 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 423 _reflns_shell.percent_possible_all 97.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.827 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.93 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.74 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -6.92 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 6.17 _refine.B_iso_max ? _refine.B_iso_mean 140.221 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CU1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.00 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8563 _refine.ls_number_reflns_R_free 474 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.63 _refine.ls_percent_reflns_R_free 5.2 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22273 _refine.ls_R_factor_R_free 0.23797 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22179 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.707 _refine.pdbx_overall_ESU_R_Free 0.330 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 58.318 _refine.overall_SU_ML 0.426 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1722 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.011 1933 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.039 1.321 3015 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.104 0.200 321 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 833 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 29.292 6.204 1932 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 40.261 58.312 9356 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.000 _refine_ls_shell.d_res_low 3.077 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_R_work 613 _refine_ls_shell.percent_reflns_obs 96.57 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.467 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.381 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6CU1 _struct.title 'X-ray structure of the S. typhimurium YrlA effector-binding module' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CU1 _struct_keywords.text 'Y RNA, YrlA, tRNA-like element, noncoding RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CU1 _struct_ref.pdbx_db_accession 6CU1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6CU1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6CU1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 400 ? 1 MORE -8 ? 1 'SSA (A^2)' 13900 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.621 ? ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 207 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.209 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 81 N3 ? ? A G 2 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 81 O2 ? ? A G 2 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 81 N4 ? ? A G 2 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 3 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 3 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 3 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 79 N1 ? ? A U 4 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 79 N6 ? ? A U 4 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 5 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 5 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 5 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 6 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 6 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 76 N1 ? ? A C 7 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 76 O6 ? ? A C 7 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 76 N2 ? ? A C 7 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 8 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 8 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 74 N3 ? ? A A 11 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 74 O4 ? ? A A 11 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 12 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 12 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 12 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 72 N3 ? ? A A 13 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 72 O4 ? ? A A 13 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 14 N3 ? ? ? 1_555 A G 71 O6 ? ? A U 14 A G 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 14 O2 ? ? ? 1_555 A G 71 N1 ? ? A U 14 A G 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A U 15 N3 ? ? ? 1_555 A G 70 O6 ? ? A U 15 A G 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 70 N1 ? ? A U 15 A G 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 66 N7 ? ? A G 17 A G 66 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog31 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 66 O6 ? ? A G 17 A G 66 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog32 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 19 A A 60 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog33 hydrog ? ? A U 19 O2 ? ? ? 1_555 A A 60 N6 ? ? A U 19 A A 60 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog34 hydrog ? ? A G 20 N1 ? ? ? 1_555 A U 36 O2 ? ? A G 20 A U 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 36 N3 ? ? A G 20 A U 36 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 21 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 21 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 21 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 22 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 22 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 22 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 23 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 23 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 23 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 24 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 24 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 24 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 25 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog49 hydrog ? ? A U 25 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 25 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 26 O2 ? ? ? 1_555 A G 62 N1 ? ? A U 26 A G 62 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 27 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 27 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 27 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 37 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 37 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 37 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 51 N3 ? ? A A 38 A U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 51 O4 ? ? A A 38 A U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 39 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 40 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 40 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 40 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 40 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 41 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 41 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 41 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 46 N7 ? ? A G 43 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 59 N7 ? ? A U 53 A A 59 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog72 hydrog ? ? A U 53 O2 ? ? ? 1_555 A A 59 N6 ? ? A U 53 A A 59 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog73 hydrog ? ? A A 54 N6 ? ? ? 1_555 A A 67 N7 ? ? A A 54 A A 67 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog74 hydrog ? ? A A 54 N7 ? ? ? 1_555 A A 67 N6 ? ? A A 54 A A 67 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog75 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 55 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 55 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 55 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 56 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 56 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 56 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 57 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 57 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 58 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 58 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 58 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 59 N6 ? ? ? 1_555 A A 65 N3 ? ? A A 59 A A 65 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 204 ? 1_555 89.6 ? 2 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 205 ? 1_555 88.7 ? 3 O ? D HOH . ? A HOH 204 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 205 ? 1_555 86.6 ? 4 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 90.7 ? 5 O ? D HOH . ? A HOH 204 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 93.2 ? 6 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 179.4 ? 7 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 90.3 ? 8 O ? D HOH . ? A HOH 204 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 179.3 ? 9 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 94.2 ? 10 O ? D HOH . ? A HOH 206 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 207 ? 1_555 86.0 ? 11 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 179.3 ? 12 O ? D HOH . ? A HOH 204 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 90.4 ? 13 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 90.6 ? 14 O ? D HOH . ? A HOH 206 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 89.9 ? 15 O ? D HOH . ? A HOH 207 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 89.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A SO4 102 ? 3 'binding site for residue SO4 A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 202 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 204 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 205 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 206 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 207 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 208 . ? 1_555 ? 7 AC2 3 A A 44 ? A A 44 . ? 1_555 ? 8 AC2 3 A A 45 ? A A 45 . ? 1_555 ? 9 AC2 3 G A 62 ? G A 62 . ? 4_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 35 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 U _pdbx_validate_symm_contact.auth_seq_id_2 77 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_445 _pdbx_validate_symm_contact.dist 2.06 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GTP _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GTP _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.77 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation -18.93 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.9836 -47.9408 -1.3542 1.7951 0.5753 1.0563 0.1496 -0.2121 0.0703 1.9456 14.3613 0.2415 -5.2155 0.5925 -1.7109 0.0603 0.1180 -0.2528 -0.5597 0.0513 0.7275 -0.0206 -0.1503 -0.1116 'X-RAY DIFFRACTION' 2 ? refined -2.8958 -12.6026 -2.4758 1.3120 0.0654 0.1875 0.0628 0.1181 0.0602 1.8285 3.0472 8.1199 0.2304 0.4261 2.5639 -0.1965 -0.1339 -0.4651 0.2919 0.1122 -0.3764 1.1882 0.6075 0.0843 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 18 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 67 ? ? A 80 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 53 ? ? A 58 ? ? ? ? 'X-RAY DIFFRACTION' 4 1 B 1 ? ? B 58 ? ? ? ? 'X-RAY DIFFRACTION' 5 1 D 2 ? ? D 3 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 A 19 ? ? A 52 ? ? ? ? 'X-RAY DIFFRACTION' 7 2 A 59 ? ? A 66 ? ? ? ? 'X-RAY DIFFRACTION' 8 2 D 1 ? ? D 1 ? ? ? ? 'X-RAY DIFFRACTION' 9 2 D 4 ? ? D 4 ? ? ? ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 10 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 SO4 S S N N 163 SO4 O1 O N N 164 SO4 O2 O N N 165 SO4 O3 O N N 166 SO4 O4 O N N 167 U OP3 O N N 168 U P P N N 169 U OP1 O N N 170 U OP2 O N N 171 U "O5'" O N N 172 U "C5'" C N N 173 U "C4'" C N R 174 U "O4'" O N N 175 U "C3'" C N S 176 U "O3'" O N N 177 U "C2'" C N R 178 U "O2'" O N N 179 U "C1'" C N R 180 U N1 N N N 181 U C2 C N N 182 U O2 O N N 183 U N3 N N N 184 U C4 C N N 185 U O4 O N N 186 U C5 C N N 187 U C6 C N N 188 U HOP3 H N N 189 U HOP2 H N N 190 U "H5'" H N N 191 U "H5''" H N N 192 U "H4'" H N N 193 U "H3'" H N N 194 U "HO3'" H N N 195 U "H2'" H N N 196 U "HO2'" H N N 197 U "H1'" H N N 198 U H3 H N N 199 U H5 H N N 200 U H6 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 SO4 S O1 doub N N 168 SO4 S O2 doub N N 169 SO4 S O3 sing N N 170 SO4 S O4 sing N N 171 U OP3 P sing N N 172 U OP3 HOP3 sing N N 173 U P OP1 doub N N 174 U P OP2 sing N N 175 U P "O5'" sing N N 176 U OP2 HOP2 sing N N 177 U "O5'" "C5'" sing N N 178 U "C5'" "C4'" sing N N 179 U "C5'" "H5'" sing N N 180 U "C5'" "H5''" sing N N 181 U "C4'" "O4'" sing N N 182 U "C4'" "C3'" sing N N 183 U "C4'" "H4'" sing N N 184 U "O4'" "C1'" sing N N 185 U "C3'" "O3'" sing N N 186 U "C3'" "C2'" sing N N 187 U "C3'" "H3'" sing N N 188 U "O3'" "HO3'" sing N N 189 U "C2'" "O2'" sing N N 190 U "C2'" "C1'" sing N N 191 U "C2'" "H2'" sing N N 192 U "O2'" "HO2'" sing N N 193 U "C1'" N1 sing N N 194 U "C1'" "H1'" sing N N 195 U N1 C2 sing N N 196 U N1 C6 sing N N 197 U C2 O2 doub N N 198 U C2 N3 sing N N 199 U N3 C4 sing N N 200 U N3 H3 sing N N 201 U C4 O4 doub N N 202 U C4 C5 sing N N 203 U C5 C6 doub N N 204 U C5 H5 sing N N 205 U C6 H6 sing N N 206 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6CU1 'double helix' 6CU1 'a-form double helix' 6CU1 'parallel strands' 6CU1 tetraloop 6CU1 'bulge loop' 6CU1 'mismatched base pair' 6CU1 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 81 1_555 -0.001 -0.185 0.428 4.855 -7.437 -2.809 1 A_G2:C81_A A 2 ? A 81 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.149 -0.106 -0.093 -2.693 -3.829 -0.712 2 A_G3:C80_A A 3 ? A 80 ? 19 1 1 A U 4 1_555 A A 79 1_555 0.030 -0.082 -0.102 0.183 -6.024 -0.634 3 A_U4:A79_A A 4 ? A 79 ? 20 1 1 A G 5 1_555 A C 78 1_555 -0.130 -0.120 -0.014 -0.086 -2.681 1.240 4 A_G5:C78_A A 5 ? A 78 ? 19 1 1 A G 6 1_555 A U 77 1_555 -2.142 -0.376 0.060 2.286 -4.234 0.399 5 A_G6:U77_A A 6 ? A 77 ? 28 1 1 A C 7 1_555 A G 76 1_555 0.141 -0.101 0.095 0.689 -6.470 -1.088 6 A_C7:G76_A A 7 ? A 76 ? 19 1 1 A U 8 1_555 A A 75 1_555 0.037 0.021 0.097 -5.684 -7.190 -3.663 7 A_U8:A75_A A 8 ? A 75 ? 20 1 1 A A 11 1_555 A U 74 1_555 -0.077 -0.044 -0.225 -8.793 -7.240 -2.065 8 A_A11:U74_A A 11 ? A 74 ? 20 1 1 A C 12 1_555 A G 73 1_555 0.056 -0.137 0.019 -3.456 -3.699 -4.910 9 A_C12:G73_A A 12 ? A 73 ? 19 1 1 A A 13 1_555 A U 72 1_555 0.030 -0.021 0.014 -9.728 -12.543 -5.296 10 A_A13:U72_A A 13 ? A 72 ? 20 1 1 A U 14 1_555 A G 71 1_555 2.019 -0.460 0.235 -4.603 -16.972 -9.958 11 A_U14:G71_A A 14 ? A 71 ? 28 1 1 A U 15 1_555 A G 70 1_555 1.976 -0.445 0.471 -13.972 -8.100 -9.171 12 A_U15:G70_A A 15 ? A 70 ? 28 1 1 A G 55 1_555 A C 69 1_555 -0.271 -0.155 -0.102 -6.747 -7.735 -1.569 13 A_G55:C69_A A 55 ? A 69 ? 19 1 1 A C 56 1_555 A G 68 1_555 0.180 -0.093 0.180 -6.414 -6.396 -0.786 14 A_C56:G68_A A 56 ? A 68 ? 19 1 1 A U 57 1_555 A A 67 1_555 -0.261 0.054 0.070 -5.603 -8.625 -6.867 15 A_U57:A67_A A 57 ? A 67 ? 20 1 1 A C 58 1_555 A G 66 1_555 0.149 -0.094 -0.074 7.440 -4.821 3.253 16 A_C58:G66_A A 58 ? A 66 ? 19 1 1 A A 59 1_555 A U 53 1_555 -4.221 -1.974 0.254 2.229 8.807 -93.871 17 A_A59:U53_A A 59 ? A 53 ? 24 4 1 A A 60 1_555 A U 19 1_555 -0.002 1.025 0.067 0.618 3.756 165.129 18 A_A60:U19_A A 60 ? A 19 ? 21 2 1 A A 46 1_555 A G 43 1_555 -7.748 -4.894 0.825 -16.534 1.114 -48.200 19 A_A46:G43_A A 46 ? A 43 ? ? ? 1 A G 47 1_555 A C 42 1_555 -0.110 -0.087 0.087 2.485 -4.421 -3.050 20 A_G47:C42_A A 47 ? A 42 ? 19 1 1 A C 48 1_555 A G 41 1_555 0.110 -0.141 -0.032 5.202 -6.360 -2.303 21 A_C48:G41_A A 48 ? A 41 ? 19 1 1 A U 49 1_555 A A 40 1_555 -0.046 -0.063 -0.110 2.241 -6.788 -1.441 22 A_U49:A40_A A 49 ? A 40 ? 20 1 1 A C 50 1_555 A G 39 1_555 0.125 -0.086 0.000 3.900 -8.983 -2.262 23 A_C50:G39_A A 50 ? A 39 ? 19 1 1 A U 51 1_555 A A 38 1_555 -0.167 -0.002 0.134 -5.017 -11.632 -4.062 24 A_U51:A38_A A 51 ? A 38 ? 20 1 1 A G 52 1_555 A C 37 1_555 -0.074 -0.091 -0.031 -5.393 -5.374 -1.062 25 A_G52:C37_A A 52 ? A 37 ? 19 1 1 A G 20 1_555 A U 36 1_555 -2.232 -0.463 -0.080 -4.045 -5.429 1.410 26 A_G20:U36_A A 20 ? A 36 ? 28 1 1 A C 21 1_555 A G 35 1_555 0.073 -0.038 0.034 -0.897 -4.574 -1.020 27 A_C21:G35_A A 21 ? A 35 ? 19 1 1 A G 22 1_555 A C 34 1_555 -0.156 -0.106 -0.096 -0.173 -1.729 -1.258 28 A_G22:C34_A A 22 ? A 34 ? 19 1 1 A G 23 1_555 A C 33 1_555 -0.171 -0.156 -0.003 1.271 -3.681 1.117 29 A_G23:C33_A A 23 ? A 33 ? 19 1 1 A G 24 1_555 A C 32 1_555 -0.014 -0.108 -0.057 -10.515 -9.711 -3.229 30 A_G24:C32_A A 24 ? A 32 ? 19 1 1 A U 25 1_555 A A 29 1_555 4.039 -1.761 0.412 -0.481 8.967 -102.713 31 A_U25:A29_A A 25 ? A 29 ? 24 4 1 A U 26 1_555 A G 62 1_555 0.620 -5.606 0.063 29.738 -4.642 -94.336 32 A_U26:G62_A A 26 ? A 62 ? ? 2 1 A C 27 1_555 A G 63 1_555 0.144 -0.158 -0.015 11.354 -13.669 -2.848 33 A_C27:G63_A A 27 ? A 63 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 81 1_555 A G 3 1_555 A C 80 1_555 -0.204 -1.919 3.302 0.030 15.125 34.467 -4.748 0.320 2.290 24.138 -0.048 37.547 1 AA_G2G3:C80C81_AA A 2 ? A 81 ? A 3 ? A 80 ? 1 A G 3 1_555 A C 80 1_555 A U 4 1_555 A A 79 1_555 0.170 -1.815 3.279 1.126 5.154 30.851 -4.299 -0.112 2.949 9.601 -2.098 31.288 2 AA_G3U4:A79C80_AA A 3 ? A 80 ? A 4 ? A 79 ? 1 A U 4 1_555 A A 79 1_555 A G 5 1_555 A C 78 1_555 0.111 -1.557 3.168 -0.165 12.180 29.313 -4.822 -0.229 2.350 22.863 0.310 31.692 3 AA_U4G5:C78A79_AA A 4 ? A 79 ? A 5 ? A 78 ? 1 A G 5 1_555 A C 78 1_555 A G 6 1_555 A U 77 1_555 -0.123 -1.978 2.963 -3.524 9.922 24.778 -6.282 -0.456 2.031 21.903 7.778 26.890 4 AA_G5G6:U77C78_AA A 5 ? A 78 ? A 6 ? A 77 ? 1 A G 6 1_555 A U 77 1_555 A C 7 1_555 A G 76 1_555 -0.329 -1.489 3.487 -3.145 6.770 40.316 -2.892 0.115 3.221 9.722 4.516 40.973 5 AA_G6C7:G76U77_AA A 6 ? A 77 ? A 7 ? A 76 ? 1 A C 7 1_555 A G 76 1_555 A U 8 1_555 A A 75 1_555 -0.048 -1.859 3.648 1.241 10.331 30.997 -5.146 0.307 2.892 18.683 -2.244 32.656 6 AA_C7U8:A75G76_AA A 7 ? A 76 ? A 8 ? A 75 ? 1 A U 8 1_555 A A 75 1_555 A A 11 1_555 A U 74 1_555 -3.102 -1.417 3.369 1.428 4.541 56.194 -1.756 3.364 3.181 4.812 -1.513 56.379 7 AA_U8A11:U74A75_AA A 8 ? A 75 ? A 11 ? A 74 ? 1 A A 11 1_555 A U 74 1_555 A C 12 1_555 A G 73 1_555 0.031 -2.278 3.222 2.123 2.633 28.203 -5.221 0.403 2.995 5.379 -4.337 28.401 8 AA_A11C12:G73U74_AA A 11 ? A 74 ? A 12 ? A 73 ? 1 A C 12 1_555 A G 73 1_555 A A 13 1_555 A U 72 1_555 0.038 -1.855 3.300 3.071 10.152 34.996 -4.270 0.335 2.671 16.421 -4.968 36.520 9 AA_C12A13:U72G73_AA A 12 ? A 73 ? A 13 ? A 72 ? 1 A A 13 1_555 A U 72 1_555 A U 14 1_555 A G 71 1_555 0.226 -1.565 3.307 2.730 0.841 38.172 -2.494 0.000 3.281 1.283 -4.167 38.274 10 AA_A13U14:G71U72_AA A 13 ? A 72 ? A 14 ? A 71 ? 1 A U 14 1_555 A G 71 1_555 A U 15 1_555 A G 70 1_555 -0.153 -1.916 3.511 5.322 2.456 39.830 -3.078 0.858 3.345 3.582 -7.761 40.242 11 AA_U14U15:G70G71_AA A 14 ? A 71 ? A 15 ? A 70 ? 1 A U 15 1_555 A G 70 1_555 A G 55 1_555 A C 69 1_555 -3.152 -1.545 3.188 13.281 1.481 49.792 -1.867 4.405 2.289 1.723 -15.455 51.443 12 AA_U15G55:C69G70_AA A 15 ? A 70 ? A 55 ? A 69 ? 1 A G 55 1_555 A C 69 1_555 A C 56 1_555 A G 68 1_555 -0.665 -1.502 3.152 -1.698 5.173 38.999 -2.805 0.799 2.962 7.702 2.529 39.363 13 AA_G55C56:G68C69_AA A 55 ? A 69 ? A 56 ? A 68 ? 1 A C 56 1_555 A G 68 1_555 A U 57 1_555 A A 67 1_555 -0.450 -1.511 3.176 1.617 4.615 31.690 -3.512 1.087 2.906 8.388 -2.938 32.056 14 AA_C56U57:A67G68_AA A 56 ? A 68 ? A 57 ? A 67 ? 1 A U 57 1_555 A A 67 1_555 A C 58 1_555 A G 66 1_555 0.943 -2.184 2.939 1.203 3.030 24.386 -5.930 -1.893 2.694 7.131 -2.832 24.600 15 AA_U57C58:G66A67_AA A 57 ? A 67 ? A 58 ? A 66 ? 1 A C 58 1_555 A G 66 1_555 A A 59 1_555 A U 53 1_555 -0.607 -0.815 3.531 -1.051 -2.593 69.707 -0.612 0.490 3.563 -2.268 0.919 69.756 16 AA_C58A59:U53G66_AA A 58 ? A 66 ? A 59 ? A 53 ? 1 A A 59 1_555 A U 53 1_555 A A 60 1_555 A U 19 1_555 1.594 -3.059 3.103 -0.598 7.922 -80.967 2.148 1.208 3.350 -6.087 -0.460 -81.289 17 AA_A59A60:U19U53_AA A 59 ? A 53 ? A 60 ? A 19 ? 1 A A 46 1_555 A G 43 1_555 A G 47 1_555 A C 42 1_555 4.183 -1.991 2.889 1.608 6.597 53.688 -2.541 -4.514 2.760 7.271 -1.773 54.084 18 AA_A46G47:C42G43_AA A 46 ? A 43 ? A 47 ? A 42 ? 1 A G 47 1_555 A C 42 1_555 A C 48 1_555 A G 41 1_555 -0.308 -1.856 3.311 -0.281 2.082 34.721 -3.421 0.472 3.200 3.484 0.471 34.783 19 AA_G47C48:G41C42_AA A 47 ? A 42 ? A 48 ? A 41 ? 1 A C 48 1_555 A G 41 1_555 A U 49 1_555 A A 40 1_555 0.044 -1.865 3.325 1.753 7.009 30.858 -4.653 0.228 2.841 12.950 -3.240 31.673 20 AA_C48U49:A40G41_AA A 48 ? A 41 ? A 49 ? A 40 ? 1 A U 49 1_555 A A 40 1_555 A C 50 1_555 A G 39 1_555 0.007 -1.519 3.240 -0.581 4.507 31.931 -3.503 -0.112 3.002 8.141 1.049 32.245 21 AA_U49C50:G39A40_AA A 49 ? A 40 ? A 50 ? A 39 ? 1 A C 50 1_555 A G 39 1_555 A U 51 1_555 A A 38 1_555 0.049 -1.859 3.323 0.455 10.948 31.819 -4.873 -0.016 2.561 19.268 -0.801 33.607 22 AA_C50U51:A38G39_AA A 50 ? A 39 ? A 51 ? A 38 ? 1 A U 51 1_555 A A 38 1_555 A G 52 1_555 A C 37 1_555 0.446 -1.927 3.053 3.547 19.996 30.639 -5.201 -0.331 1.583 33.609 -5.961 36.624 23 AA_U51G52:C37A38_AA A 51 ? A 38 ? A 52 ? A 37 ? 1 A G 52 1_555 A C 37 1_555 A G 20 1_555 A U 36 1_555 0.026 -2.319 3.039 -2.301 8.154 27.116 -6.283 -0.492 2.250 16.876 4.762 28.385 24 AA_G52G20:U36C37_AA A 52 ? A 37 ? A 20 ? A 36 ? 1 A G 20 1_555 A U 36 1_555 A C 21 1_555 A G 35 1_555 -0.674 -1.749 3.343 -2.935 1.872 39.283 -2.817 0.647 3.299 2.778 4.355 39.431 25 AA_G20C21:G35U36_AA A 20 ? A 36 ? A 21 ? A 35 ? 1 A C 21 1_555 A G 35 1_555 A G 22 1_555 A C 34 1_555 -0.485 -1.706 3.174 -0.390 13.146 29.266 -5.143 0.817 2.228 24.517 0.727 32.026 26 AA_C21G22:C34G35_AA A 21 ? A 35 ? A 22 ? A 34 ? 1 A G 22 1_555 A C 34 1_555 A G 23 1_555 A C 33 1_555 0.670 -1.935 3.251 -1.032 6.777 30.588 -4.769 -1.421 2.745 12.647 1.926 31.329 27 AA_G22G23:C33C34_AA A 22 ? A 34 ? A 23 ? A 33 ? 1 A G 23 1_555 A C 33 1_555 A G 24 1_555 A C 32 1_555 0.524 -2.301 3.591 3.889 2.413 32.738 -4.487 -0.208 3.455 4.256 -6.858 33.048 28 AA_G23G24:C32C33_AA A 23 ? A 33 ? A 24 ? A 32 ? 1 A G 24 1_555 A C 32 1_555 A U 25 1_555 A A 29 1_555 -2.612 -2.059 3.195 -0.822 -1.293 86.678 -1.472 1.885 3.239 -0.942 0.599 86.689 29 AA_G24U25:A29C32_AA A 24 ? A 32 ? A 25 ? A 29 ? 1 A U 25 1_555 A A 29 1_555 A U 26 1_555 A G 62 1_555 2.203 -1.897 3.056 6.399 3.984 43.181 -2.905 -2.370 3.157 5.365 -8.616 43.803 30 AA_U25U26:G62A29_AA A 25 ? A 29 ? A 26 ? A 62 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM073863 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' R01AI116313 2 # _atom_sites.entry_id 6CU1 _atom_sites.fract_transf_matrix[1][1] 0.016832 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006798 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009846 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_