HEADER RNA 23-MAR-18 6CU1 TITLE X-RAY STRUCTURE OF THE S. TYPHIMURIUM YRLA EFFECTOR-BINDING MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YRLA EFFECTOR-BINDING MODULE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 4 TYPHIMURIUM; SOURCE 5 ORGANISM_TAXID: 90371 KEYWDS Y RNA, YRLA, TRNA-LIKE ELEMENT, NONCODING RNA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,X.CHEN,S.L.WOLIN,Y.XIONG REVDAT 4 13-MAR-24 6CU1 1 LINK REVDAT 3 18-DEC-19 6CU1 1 REMARK REVDAT 2 19-DEC-18 6CU1 1 JRNL REVDAT 1 31-OCT-18 6CU1 0 JRNL AUTH W.WANG,X.CHEN,S.L.WOLIN,Y.XIONG JRNL TITL STRUCTURAL BASIS FOR TRNA MIMICRY BY A BACTERIAL Y RNA. JRNL REF STRUCTURE V. 26 1635 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30318468 JRNL DOI 10.1016/J.STR.2018.09.001 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 8563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 474 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1722 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 140.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -6.92000 REMARK 3 B33 (A**2) : 6.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.707 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.426 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 58.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1933 ; 0.009 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3015 ; 1.039 ; 1.321 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 833 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1932 ;29.292 ; 6.204 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9356 ;40.261 ;58.312 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 18 REMARK 3 RESIDUE RANGE : A 67 A 80 REMARK 3 RESIDUE RANGE : A 53 A 58 REMARK 3 RESIDUE RANGE : B 1 B 58 REMARK 3 RESIDUE RANGE : D 2 D 3 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9836 -47.9408 -1.3542 REMARK 3 T TENSOR REMARK 3 T11: 1.7951 T22: 0.5753 REMARK 3 T33: 1.0563 T12: 0.1496 REMARK 3 T13: -0.2121 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 1.9456 L22: 14.3613 REMARK 3 L33: 0.2415 L12: -5.2155 REMARK 3 L13: 0.5925 L23: -1.7109 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.1180 S13: -0.2528 REMARK 3 S21: -0.5597 S22: 0.0513 S23: 0.7275 REMARK 3 S31: -0.0206 S32: -0.1503 S33: -0.1116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 52 REMARK 3 RESIDUE RANGE : A 59 A 66 REMARK 3 RESIDUE RANGE : D 1 D 1 REMARK 3 RESIDUE RANGE : D 4 D 4 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8958 -12.6026 -2.4758 REMARK 3 T TENSOR REMARK 3 T11: 1.3120 T22: 0.0654 REMARK 3 T33: 0.1875 T12: 0.0628 REMARK 3 T13: 0.1181 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 1.8285 L22: 3.0472 REMARK 3 L33: 8.1199 L12: 0.2304 REMARK 3 L13: 0.4261 L23: 2.5639 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: -0.1339 S13: -0.4651 REMARK 3 S21: 0.2919 S22: 0.1122 S23: -0.3764 REMARK 3 S31: 1.1882 S32: 0.6075 S33: 0.0843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9304 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM SUCCINATE, PH 5.5, 20 MM REMARK 280 MAGNESIUM CHLORIDE, 3.0 M AMMONIUM SULFATE, MICROBATCH, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.70450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.55400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.70450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.55400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.78200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.70450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.55400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.78200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.70450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.55400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' G A 35 OP1 U A 77 8445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 HOH A 204 O 89.6 REMARK 620 3 HOH A 205 O 88.7 86.6 REMARK 620 4 HOH A 206 O 90.7 93.2 179.4 REMARK 620 5 HOH A 207 O 90.3 179.3 94.2 86.0 REMARK 620 6 HOH A 208 O 179.3 90.4 90.6 89.9 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 DBREF 6CU1 A 1 81 PDB 6CU1 6CU1 1 81 SEQRES 1 A 81 GTP G G U G G C U C U A C A SEQRES 2 A 81 U U U G U U G C G G G U U SEQRES 3 A 81 C G A G A C C C G U C A G SEQRES 4 A 81 A G C G A A A G C U C U G SEQRES 5 A 81 U A G C U C A A U G G U A SEQRES 6 A 81 G A G C G G U G U A G U C SEQRES 7 A 81 A C C HET GTP A 1 32 HET MG A 101 1 HET SO4 A 102 5 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 MG MG 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *8(H2 O) LINK O3' GTP A 1 P G A 2 1555 1555 1.62 LINK MG MG A 101 O HOH A 202 1555 1555 2.19 LINK MG MG A 101 O HOH A 204 1555 1555 2.19 LINK MG MG A 101 O HOH A 205 1555 1555 2.20 LINK MG MG A 101 O HOH A 206 1555 1555 2.19 LINK MG MG A 101 O HOH A 207 1555 1555 2.21 LINK MG MG A 101 O HOH A 208 1555 1555 2.21 SITE 1 AC1 6 HOH A 202 HOH A 204 HOH A 205 HOH A 206 SITE 2 AC1 6 HOH A 207 HOH A 208 SITE 1 AC2 3 A A 44 A A 45 G A 62 CRYST1 59.409 147.108 101.564 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009846 0.00000 HETATM 1 PG GTP A 1 7.739 -72.442 -4.770 1.00311.08 P ANISOU 1 PG GTP A 1 46859 32381 38956 1348 -3920 -417 P HETATM 2 O1G GTP A 1 8.123 -72.089 -6.183 1.00254.17 O ANISOU 2 O1G GTP A 1 40452 24996 31125 1653 -4128 -536 O HETATM 3 O2G GTP A 1 8.910 -73.136 -4.042 1.00290.71 O ANISOU 3 O2G GTP A 1 44169 30064 36222 1247 -3385 -337 O HETATM 4 O3G GTP A 1 7.306 -71.205 -4.028 1.00247.23 O ANISOU 4 O3G GTP A 1 38394 24463 31078 1234 -3671 -286 O HETATM 5 O3B GTP A 1 6.516 -73.490 -4.781 1.00325.73 O ANISOU 5 O3B GTP A 1 48383 33871 41508 1292 -4546 -499 O HETATM 6 PB GTP A 1 5.159 -73.188 -3.969 1.00242.29 P ANISOU 6 PB GTP A 1 37080 23154 31823 1127 -4661 -369 P HETATM 7 O1B GTP A 1 4.104 -74.186 -4.357 1.00199.56 O ANISOU 7 O1B GTP A 1 31428 17241 27155 1132 -5374 -461 O HETATM 8 O2B GTP A 1 5.414 -73.195 -2.478 1.00208.61 O ANISOU 8 O2B GTP A 1 32308 19192 27762 957 -3946 -140 O HETATM 9 O3A GTP A 1 4.730 -71.710 -4.441 1.00219.89 O ANISOU 9 O3A GTP A 1 34420 20306 28820 1213 -4788 -380 O HETATM 10 PA GTP A 1 4.302 -71.386 -5.972 1.00267.47 P ANISOU 10 PA GTP A 1 41084 25957 34583 1471 -5566 -612 P HETATM 11 O1A GTP A 1 3.922 -72.646 -6.710 1.00220.70 O ANISOU 11 O1A GTP A 1 35374 19584 28897 1590 -6313 -810 O HETATM 12 O2A GTP A 1 5.423 -70.611 -6.631 1.00331.34 O ANISOU 12 O2A GTP A 1 49888 34284 41720 1666 -5209 -639 O HETATM 13 O5' GTP A 1 3.032 -70.413 -5.834 1.00213.74 O ANISOU 13 O5' GTP A 1 33863 18955 28393 1415 -5854 -553 O HETATM 14 C5' GTP A 1 1.874 -70.864 -5.185 1.00211.96 C ANISOU 14 C5' GTP A 1 32869 18432 29235 1255 -6065 -442 C HETATM 15 C4' GTP A 1 0.902 -71.377 -6.241 1.00192.30 C ANISOU 15 C4' GTP A 1 30499 15290 27275 1393 -7157 -665 C HETATM 16 O4' GTP A 1 0.553 -72.779 -5.748 1.00195.15 O ANISOU 16 O4' GTP A 1 30311 15386 28451 1263 -7290 -610 O HETATM 17 C3' GTP A 1 -0.458 -70.710 -6.150 1.00210.27 C ANISOU 17 C3' GTP A 1 32215 17182 30494 1337 -7550 -585 C HETATM 18 O3' GTP A 1 -0.548 -69.572 -6.964 1.00279.49 O ANISOU 18 O3' GTP A 1 41513 25929 38752 1509 -7864 -720 O HETATM 19 C2' GTP A 1 -1.413 -71.792 -6.603 1.00195.79 C ANISOU 19 C2' GTP A 1 30076 14636 29677 1360 -8504 -713 C HETATM 20 O2' GTP A 1 -1.426 -71.888 -8.008 1.00190.17 O ANISOU 20 O2' GTP A 1 30207 13537 28511 1654 -9515 -1077 O HETATM 21 C1' GTP A 1 -0.815 -73.041 -5.985 1.00223.57 C ANISOU 21 C1' GTP A 1 33389 18318 33240 1246 -8083 -631 C HETATM 22 N9 GTP A 1 -1.452 -73.224 -4.670 1.00284.33 N ANISOU 22 N9 GTP A 1 40078 25984 41970 1020 -7447 -263 N HETATM 23 C8 GTP A 1 -0.785 -73.414 -3.494 1.00229.15 C ANISOU 23 C8 GTP A 1 32865 19480 34720 902 -6414 -12 C HETATM 24 N7 GTP A 1 -1.688 -73.536 -2.500 1.00210.34 N ANISOU 24 N7 GTP A 1 29631 16845 33441 800 -5996 328 N HETATM 25 C5 GTP A 1 -2.925 -73.434 -3.029 1.00272.01 C ANISOU 25 C5 GTP A 1 37005 24002 42344 810 -6744 315 C HETATM 26 C6 GTP A 1 -4.197 -73.485 -2.463 1.00296.88 C ANISOU 26 C6 GTP A 1 39214 26592 46994 747 -6661 637 C HETATM 27 O6 GTP A 1 -4.306 -73.666 -1.250 1.00320.49 O ANISOU 27 O6 GTP A 1 41705 29673 50392 708 -5687 1028 O HETATM 28 N1 GTP A 1 -5.309 -73.351 -3.257 1.00268.25 N ANISOU 28 N1 GTP A 1 35250 22255 44416 769 -7656 532 N HETATM 29 C2 GTP A 1 -5.165 -73.160 -4.610 1.00231.62 C ANISOU 29 C2 GTP A 1 31332 17469 39202 895 -8770 80 C HETATM 30 N2 GTP A 1 -6.240 -73.024 -5.387 1.00223.87 N ANISOU 30 N2 GTP A 1 30095 15735 39230 954 -9862 -58 N HETATM 31 N3 GTP A 1 -3.905 -73.097 -5.173 1.00240.74 N ANISOU 31 N3 GTP A 1 33515 19192 38760 1007 -8755 -215 N HETATM 32 C4 GTP A 1 -2.798 -73.234 -4.402 1.00288.71 C ANISOU 32 C4 GTP A 1 39807 25960 43927 945 -7743 -86 C