HEADER TRANSFERASE 23-MAR-18 6CU5 TITLE CRYSTAL STRUCTURE OF A PROTEIN ARGININE N-METHYLTRANSFERASE FROM TITLE 2 NAEGLERIA FOWLERI BOUND TO SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA FOWLERI; SOURCE 3 ORGANISM_COMMON: BRAIN-EATING AMOEBA; SOURCE 4 ORGANISM_TAXID: 5763; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, BRAIN EATING AMOEBA, PRIMARY AMEBIC KEYWDS 2 MENINGOENCEPHALITIS (PAM), AMEBIC ENCEPHALITIS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CU5 1 REMARK REVDAT 1 04-APR-18 6CU5 0 JRNL AUTH T.E.EDWARDS,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN ARGININE N-METHYLTRANSFERASE JRNL TITL 2 FROM NAEGLERIA FOWLERI BOUND TO SAH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7565 - 6.3420 0.99 1321 153 0.1587 0.2126 REMARK 3 2 6.3420 - 5.0364 1.00 1329 141 0.1578 0.2037 REMARK 3 3 5.0364 - 4.4005 1.00 1288 162 0.1400 0.1983 REMARK 3 4 4.4005 - 3.9985 1.00 1319 134 0.1425 0.2154 REMARK 3 5 3.9985 - 3.7121 1.00 1301 148 0.1792 0.2555 REMARK 3 6 3.7121 - 3.4933 1.00 1318 132 0.1976 0.2960 REMARK 3 7 3.4933 - 3.3184 1.00 1281 158 0.1993 0.2882 REMARK 3 8 3.3184 - 3.1740 0.99 1325 132 0.2340 0.3324 REMARK 3 9 3.1740 - 3.0519 1.00 1298 128 0.2454 0.3427 REMARK 3 10 3.0519 - 2.9466 1.00 1315 143 0.2481 0.3490 REMARK 3 11 2.9466 - 2.8545 1.00 1287 149 0.2535 0.3583 REMARK 3 12 2.8545 - 2.7729 1.00 1290 145 0.2736 0.3717 REMARK 3 13 2.7729 - 2.6999 1.00 1266 143 0.2510 0.3741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9855 2.6364 41.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.2192 REMARK 3 T33: 0.2181 T12: 0.0140 REMARK 3 T13: -0.0998 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.2021 L22: 3.2488 REMARK 3 L33: 0.5800 L12: 1.1235 REMARK 3 L13: 0.8275 L23: 1.3211 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: 0.1138 S13: 0.0053 REMARK 3 S21: -0.2094 S22: 0.0289 S23: 0.0761 REMARK 3 S31: -0.1869 S32: 0.0454 S33: 0.0498 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8045 -14.5988 19.9424 REMARK 3 T TENSOR REMARK 3 T11: 0.7242 T22: 0.3024 REMARK 3 T33: 0.3717 T12: -0.0232 REMARK 3 T13: -0.0972 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: -0.0461 L22: -0.0856 REMARK 3 L33: 6.3452 L12: -0.1588 REMARK 3 L13: 0.7827 L23: -0.7625 REMARK 3 S TENSOR REMARK 3 S11: 0.1537 S12: 0.1697 S13: -0.1263 REMARK 3 S21: -0.3540 S22: 0.1155 S23: 0.0688 REMARK 3 S31: 0.1349 S32: -0.2229 S33: -0.0958 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2486 -19.2913 32.9904 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.2258 REMARK 3 T33: 0.1817 T12: -0.0200 REMARK 3 T13: -0.0813 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.0345 L22: 2.8564 REMARK 3 L33: 0.1181 L12: 0.8187 REMARK 3 L13: 0.2825 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.0700 S13: -0.0414 REMARK 3 S21: 0.0893 S22: -0.0322 S23: -0.1187 REMARK 3 S31: 0.0401 S32: -0.0515 S33: -0.0284 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9617 -0.7439 -4.0625 REMARK 3 T TENSOR REMARK 3 T11: 0.8522 T22: 0.3331 REMARK 3 T33: 0.3493 T12: -0.0535 REMARK 3 T13: -0.1697 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.5718 L22: 2.5642 REMARK 3 L33: 0.6206 L12: -0.1914 REMARK 3 L13: -0.0073 L23: 1.2806 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0100 S13: -0.0727 REMARK 3 S21: -0.2070 S22: -0.0412 S23: 0.0266 REMARK 3 S31: 0.0768 S32: 0.0534 S33: -0.0145 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2006 19.8855 19.2714 REMARK 3 T TENSOR REMARK 3 T11: 0.6917 T22: 0.3583 REMARK 3 T33: 0.4200 T12: 0.0369 REMARK 3 T13: -0.2024 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1159 L22: 0.7592 REMARK 3 L33: 3.6733 L12: 0.3660 REMARK 3 L13: 0.4315 L23: -0.7700 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.0287 S13: 0.1228 REMARK 3 S21: -0.1486 S22: 0.0840 S23: 0.1648 REMARK 3 S31: 0.0174 S32: -0.3083 S33: -0.0834 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 242 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3356 20.0129 13.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.6693 T22: 0.3105 REMARK 3 T33: 0.2933 T12: 0.0344 REMARK 3 T13: -0.1322 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.3340 L22: 2.8665 REMARK 3 L33: 2.2478 L12: -0.1962 REMARK 3 L13: 0.5352 L23: 0.7672 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0732 S13: 0.0044 REMARK 3 S21: -0.0682 S22: -0.0596 S23: -0.0079 REMARK 3 S31: -0.3732 S32: -0.1842 S33: 0.0400 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 16 THROUGH 38 OR REMARK 3 (RESID 39 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 40 REMARK 3 THROUGH 79 OR (RESID 80 THROUGH 81 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 82 THROUGH 97 OR REMARK 3 (RESID 98 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 99 OR REMARK 3 (RESID 100 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 101 REMARK 3 THROUGH 105 OR (RESID 106 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 107 THROUGH 112 OR (RESID 113 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 114 THROUGH 167 REMARK 3 OR (RESID 168 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 169 THROUGH 200 OR (RESID 201 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 202 THROUGH 218 OR (RESID 219 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 220 OR (RESID REMARK 3 221 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 222 THROUGH REMARK 3 236 OR (RESID 237 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 238 THROUGH 285 OR (RESID 286 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 287 THROUGH 291 OR REMARK 3 (RESID 292 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 293 REMARK 3 THROUGH 304 OR (RESID 305 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 306 THROUGH 327 OR (RESID 328 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME OXT)) OR RESID 401)) REMARK 3 SELECTION : (CHAIN B AND (RESID 16 THROUGH 143 OR REMARK 3 (RESID 144 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 145 REMARK 3 THROUGH 152 OR (RESID 153 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 154 THROUGH 165 OR (RESID 166 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 167 THROUGH 328 REMARK 3 OR RESID 401)) REMARK 3 ATOM PAIRS NUMBER : 1916 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.751 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.256 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.31 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 6CU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.5 MG/ML NAFOA.01523.A.B1.PW37976 REMARK 280 AGAINST PROPLEX SCREEN CONDITION F12 (1.5 M AMMONIUM SULFATE, REMARK 280 0.1 M SODIUM HEPES, PH 7.0), CRYOPROTECTANT: 20% ETHYLENE GLYCOL, REMARK 280 CRYSTAL TRACKING ID 297887F12, UNIQUE PUCK ID BSJ2-10, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.72500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 PHE A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 THR A 14 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 465 PHE B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 ASP B 7 REMARK 465 PHE B 8 REMARK 465 GLN B 9 REMARK 465 GLN B 10 REMARK 465 GLN B 11 REMARK 465 GLN B 12 REMARK 465 PRO B 13 REMARK 465 THR B 14 REMARK 465 THR B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 15 OG1 CG2 REMARK 470 ILE A 17 CG1 CG2 CD1 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 TYR A 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 GLN A 299 CG CD OE1 NE2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 ILE B 17 CG1 CG2 CD1 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLN B 106 CG CD OE1 NE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 GLN B 237 CG CD OE1 NE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 GLN B 299 CG CD OE1 NE2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 ARG B 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 147 NH2 ARG A 253 2.10 REMARK 500 OD2 ASP A 175 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 86 OG SER B 229 2545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 35 -61.60 -97.27 REMARK 500 LEU A 126 -43.67 66.00 REMARK 500 ASP A 163 53.00 -150.20 REMARK 500 ASP A 222 9.70 -69.26 REMARK 500 LYS A 273 -138.07 61.81 REMARK 500 LEU B 126 -46.79 64.87 REMARK 500 ASP B 163 57.64 -147.68 REMARK 500 LYS B 273 -135.76 59.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NAFOA.01523.A RELATED DB: TARGETTRACK DBREF 6CU5 A -7 328 PDB 6CU5 6CU5 -7 328 DBREF 6CU5 B -7 328 PDB 6CU5 6CU5 -7 328 SEQRES 1 A 336 MET ALA HIS HIS HIS HIS HIS HIS MET ASN ASP PHE HIS SEQRES 2 A 336 HIS ASP PHE GLN GLN GLN GLN PRO THR THR GLY ILE HIS SEQRES 3 A 336 GLU GLU MET LEU LYS ASP GLY ILE ARG THR ASN ALA TYR SEQRES 4 A 336 LYS ASN ALA ILE LEU GLN ASN LYS HIS LEU PHE LYS ASP SEQRES 5 A 336 LYS VAL VAL LEU ASP ILE GLY CYS GLY THR GLY ILE LEU SEQRES 6 A 336 CYS LEU PHE ALA ALA LYS ALA GLY ALA LYS ARG VAL ILE SEQRES 7 A 336 GLY ILE ASP MET SER ASP ILE ILE ASP LYS ALA ARG GLN SEQRES 8 A 336 ILE VAL SER ASP ASN GLY TYR SER HIS VAL ILE GLU LEU SEQRES 9 A 336 ILE LYS GLY LYS VAL GLU ASP ILE ALA GLN LEU PRO PHE SEQRES 10 A 336 GLY ILE GLU LYS VAL ASP ILE ILE ILE SER GLU TRP MET SEQRES 11 A 336 GLY TYR PHE LEU LEU TYR GLU SER MET LEU GLN THR VAL SEQRES 12 A 336 LEU SER ALA ARG ASP ARG TRP LEU ARG PRO GLY GLY TYR SEQRES 13 A 336 LEU PHE PRO ASP LYS CYS THR MET TYR ILE CYS GLY ILE SEQRES 14 A 336 GLU ASP SER GLU TYR LYS ARG ASP LYS ILE ASP PHE TRP SEQRES 15 A 336 ASP ASN VAL TYR GLY PHE ASN PHE SER ALA ILE LYS ALA SEQRES 16 A 336 ASP ALA LEU ARG GLU PRO LEU VAL ASP PHE VAL GLU SER SEQRES 17 A 336 GLN GLN ILE ILE THR THR GLN SER LYS PHE LEU GLU ILE SEQRES 18 A 336 ASP LEU ASN THR ILE GLN PRO GLU ASP LEU LYS GLN ILE SEQRES 19 A 336 THR THR SER PHE GLU PHE THR SER GLN TYR GLN GLU TYR SEQRES 20 A 336 CYS GLN ALA PHE VAL ALA TRP PHE ASP CYS VAL PHE SER SEQRES 21 A 336 ARG GLY PRO HIS LYS PRO VAL GLU PHE SER THR GLY PRO SEQRES 22 A 336 PHE THR GLU GLY THR HIS TRP LYS GLN THR VAL PHE TYR SEQRES 23 A 336 LEU GLU ASN ASP LEU PRO LEU LYS PRO ASN ASP VAL ILE SEQRES 24 A 336 LYS GLY THR ILE THR ILE SER GLN ASN LYS SER ASN HIS SEQRES 25 A 336 ARG ASP LEU ASP ILE SER MET LYS TYR THR VAL ASN GLY SEQRES 26 A 336 GLY ALA VAL ILE SER GLN ASP TYR ILE MET ARG SEQRES 1 B 336 MET ALA HIS HIS HIS HIS HIS HIS MET ASN ASP PHE HIS SEQRES 2 B 336 HIS ASP PHE GLN GLN GLN GLN PRO THR THR GLY ILE HIS SEQRES 3 B 336 GLU GLU MET LEU LYS ASP GLY ILE ARG THR ASN ALA TYR SEQRES 4 B 336 LYS ASN ALA ILE LEU GLN ASN LYS HIS LEU PHE LYS ASP SEQRES 5 B 336 LYS VAL VAL LEU ASP ILE GLY CYS GLY THR GLY ILE LEU SEQRES 6 B 336 CYS LEU PHE ALA ALA LYS ALA GLY ALA LYS ARG VAL ILE SEQRES 7 B 336 GLY ILE ASP MET SER ASP ILE ILE ASP LYS ALA ARG GLN SEQRES 8 B 336 ILE VAL SER ASP ASN GLY TYR SER HIS VAL ILE GLU LEU SEQRES 9 B 336 ILE LYS GLY LYS VAL GLU ASP ILE ALA GLN LEU PRO PHE SEQRES 10 B 336 GLY ILE GLU LYS VAL ASP ILE ILE ILE SER GLU TRP MET SEQRES 11 B 336 GLY TYR PHE LEU LEU TYR GLU SER MET LEU GLN THR VAL SEQRES 12 B 336 LEU SER ALA ARG ASP ARG TRP LEU ARG PRO GLY GLY TYR SEQRES 13 B 336 LEU PHE PRO ASP LYS CYS THR MET TYR ILE CYS GLY ILE SEQRES 14 B 336 GLU ASP SER GLU TYR LYS ARG ASP LYS ILE ASP PHE TRP SEQRES 15 B 336 ASP ASN VAL TYR GLY PHE ASN PHE SER ALA ILE LYS ALA SEQRES 16 B 336 ASP ALA LEU ARG GLU PRO LEU VAL ASP PHE VAL GLU SER SEQRES 17 B 336 GLN GLN ILE ILE THR THR GLN SER LYS PHE LEU GLU ILE SEQRES 18 B 336 ASP LEU ASN THR ILE GLN PRO GLU ASP LEU LYS GLN ILE SEQRES 19 B 336 THR THR SER PHE GLU PHE THR SER GLN TYR GLN GLU TYR SEQRES 20 B 336 CYS GLN ALA PHE VAL ALA TRP PHE ASP CYS VAL PHE SER SEQRES 21 B 336 ARG GLY PRO HIS LYS PRO VAL GLU PHE SER THR GLY PRO SEQRES 22 B 336 PHE THR GLU GLY THR HIS TRP LYS GLN THR VAL PHE TYR SEQRES 23 B 336 LEU GLU ASN ASP LEU PRO LEU LYS PRO ASN ASP VAL ILE SEQRES 24 B 336 LYS GLY THR ILE THR ILE SER GLN ASN LYS SER ASN HIS SEQRES 25 B 336 ARG ASP LEU ASP ILE SER MET LYS TYR THR VAL ASN GLY SEQRES 26 B 336 GLY ALA VAL ILE SER GLN ASP TYR ILE MET ARG HET SAH A 401 26 HET SAH B 401 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *73(H2 O) HELIX 1 AA1 THR A 15 ASP A 24 1 10 HELIX 2 AA2 ASP A 24 GLN A 37 1 14 HELIX 3 AA3 ASN A 38 LYS A 43 1 6 HELIX 4 AA4 GLY A 55 GLY A 65 1 11 HELIX 5 AA5 ASP A 76 ASN A 88 1 13 HELIX 6 AA6 LYS A 100 ILE A 104 5 5 HELIX 7 AA7 LEU A 107 ILE A 111 5 5 HELIX 8 AA8 MET A 131 TRP A 142 1 12 HELIX 9 AA9 ASP A 163 ILE A 171 1 9 HELIX 10 AB1 ASP A 172 ASN A 176 5 5 HELIX 11 AB2 PHE A 182 ALA A 184 5 3 HELIX 12 AB3 ILE A 185 GLU A 192 1 8 HELIX 13 AB4 GLU A 199 ILE A 203 5 5 HELIX 14 AB5 GLN A 219 LEU A 223 5 5 HELIX 15 AB6 ILE B 17 ASP B 24 1 8 HELIX 16 AB7 ASP B 24 GLN B 37 1 14 HELIX 17 AB8 ASN B 38 LYS B 43 1 6 HELIX 18 AB9 GLY B 55 GLY B 65 1 11 HELIX 19 AC1 ASP B 76 ASN B 88 1 13 HELIX 20 AC2 LYS B 100 ILE B 104 5 5 HELIX 21 AC3 LEU B 107 ILE B 111 5 5 HELIX 22 AC4 MET B 131 TRP B 142 1 12 HELIX 23 AC5 ASP B 163 ILE B 171 1 9 HELIX 24 AC6 ASP B 172 ASN B 176 5 5 HELIX 25 AC7 PHE B 182 ALA B 184 5 3 HELIX 26 AC8 ILE B 185 GLU B 192 1 8 HELIX 27 AC9 GLU B 199 ILE B 203 5 5 HELIX 28 AD1 GLN B 219 LEU B 223 5 5 SHEET 1 AA1 5 ILE A 94 LYS A 98 0 SHEET 2 AA1 5 ARG A 68 ASP A 73 1 N GLY A 71 O ILE A 97 SHEET 3 AA1 5 VAL A 46 ILE A 50 1 N VAL A 47 O ARG A 68 SHEET 4 AA1 5 VAL A 114 SER A 119 1 O ILE A 118 N LEU A 48 SHEET 5 AA1 5 LEU A 143 PHE A 150 1 O PHE A 150 N ILE A 117 SHEET 1 AA2 5 LEU A 194 ASP A 196 0 SHEET 2 AA2 5 GLN A 274 LEU A 285 -1 O VAL A 276 N LEU A 194 SHEET 3 AA2 5 GLU A 238 PHE A 251 -1 N PHE A 243 O PHE A 277 SHEET 4 AA2 5 LYS A 153 ILE A 161 -1 N TYR A 157 O TRP A 246 SHEET 5 AA2 5 SER A 208 ASP A 214 -1 O SER A 208 N ILE A 158 SHEET 1 AA3 4 LEU A 194 ASP A 196 0 SHEET 2 AA3 4 GLN A 274 LEU A 285 -1 O VAL A 276 N LEU A 194 SHEET 3 AA3 4 GLU A 238 PHE A 251 -1 N PHE A 243 O PHE A 277 SHEET 4 AA3 4 VAL A 259 SER A 262 -1 O VAL A 259 N PHE A 251 SHEET 1 AA4 4 GLN A 225 THR A 233 0 SHEET 2 AA4 4 VAL A 290 GLN A 299 -1 O ILE A 291 N PHE A 232 SHEET 3 AA4 4 LEU A 307 VAL A 315 -1 O LYS A 312 N THR A 294 SHEET 4 AA4 4 ILE A 321 MET A 327 -1 O MET A 327 N LEU A 307 SHEET 1 AA5 5 ILE B 94 LYS B 98 0 SHEET 2 AA5 5 ARG B 68 ASP B 73 1 N VAL B 69 O GLU B 95 SHEET 3 AA5 5 VAL B 46 ILE B 50 1 N ASP B 49 O ILE B 70 SHEET 4 AA5 5 VAL B 114 SER B 119 1 O ILE B 118 N LEU B 48 SHEET 5 AA5 5 LEU B 143 PHE B 150 1 O PHE B 150 N ILE B 117 SHEET 1 AA6 5 LEU B 194 ASP B 196 0 SHEET 2 AA6 5 GLN B 274 LEU B 285 -1 O VAL B 276 N LEU B 194 SHEET 3 AA6 5 GLU B 238 PHE B 251 -1 N PHE B 243 O PHE B 277 SHEET 4 AA6 5 LYS B 153 ILE B 161 -1 N TYR B 157 O TRP B 246 SHEET 5 AA6 5 SER B 208 ASP B 214 -1 O ILE B 213 N CYS B 154 SHEET 1 AA7 4 LEU B 194 ASP B 196 0 SHEET 2 AA7 4 GLN B 274 LEU B 285 -1 O VAL B 276 N LEU B 194 SHEET 3 AA7 4 GLU B 238 PHE B 251 -1 N PHE B 243 O PHE B 277 SHEET 4 AA7 4 VAL B 259 SER B 262 -1 O VAL B 259 N PHE B 251 SHEET 1 AA8 4 GLN B 225 THR B 233 0 SHEET 2 AA8 4 VAL B 290 GLN B 299 -1 O ILE B 297 N ILE B 226 SHEET 3 AA8 4 LEU B 307 VAL B 315 -1 O LYS B 312 N THR B 294 SHEET 4 AA8 4 ILE B 321 MET B 327 -1 O MET B 327 N LEU B 307 CISPEP 1 PHE A 150 PRO A 151 0 -4.69 CISPEP 2 PHE B 150 PRO B 151 0 -3.32 SITE 1 AC1 15 HIS A 18 ARG A 27 GLY A 51 CYS A 52 SITE 2 AC1 15 ILE A 56 LEU A 57 ASP A 73 MET A 74 SITE 3 AC1 15 SER A 75 GLY A 99 LYS A 100 VAL A 101 SITE 4 AC1 15 GLU A 102 GLU A 120 MET A 131 SITE 1 AC2 15 HIS B 18 ARG B 27 GLY B 51 CYS B 52 SITE 2 AC2 15 ILE B 56 LEU B 57 ASP B 73 MET B 74 SITE 3 AC2 15 SER B 75 GLY B 99 LYS B 100 VAL B 101 SITE 4 AC2 15 GLU B 102 GLU B 120 MET B 131 CRYST1 43.200 101.450 80.680 90.00 100.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023148 0.000000 0.004123 0.00000 SCALE2 0.000000 0.009857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012590 0.00000