HEADER IMMUNE SYSTEM 26-MAR-18 6CUH TITLE CRYSTAL STRUCTURE OF THE UNLIGANDED BC8B TCR COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR ALPHA VARIABLE, TRAV 9-2. BC8B TCR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RECEPTOR BETA VARIABLE, TRBV 6-2. BC8B TCR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS T CELL RECEPTOR, TCR, BC8B, CD1B, PC, PHOSPHATIDYLCHOLINE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.E.SHAHINE,J.ROSSJOHN REVDAT 2 04-OCT-23 6CUH 1 REMARK REVDAT 1 16-JAN-19 6CUH 0 JRNL AUTH A.SHAHINE,P.REININK,J.F.REIJNEVELD,S.GRAS,M.HOLZHEIMER, JRNL AUTH 2 T.Y.CHENG,A.J.MINNAARD,J.D.ALTMAN,S.LENZ,J.PRANDI, JRNL AUTH 3 J.KUBLER-KIELB,D.B.MOODY,J.ROSSJOHN,I.VAN RHIJN JRNL TITL A T-CELL RECEPTOR ESCAPE CHANNEL ALLOWS BROAD T-CELL JRNL TITL 2 RESPONSE TO CD1B AND MEMBRANE PHOSPHOLIPIDS. JRNL REF NAT COMMUN V. 10 56 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30610190 JRNL DOI 10.1038/S41467-018-07898-0 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2846 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2490 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2701 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.09 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.46680 REMARK 3 B22 (A**2) : 5.44580 REMARK 3 B33 (A**2) : 10.02110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.194 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.187 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3381 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4608 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1492 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 496 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3381 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 440 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3772 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.26 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 3.5238 9.6137 -3.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.0335 REMARK 3 T33: -0.0366 T12: 0.0936 REMARK 3 T13: -0.0783 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6754 L22: 1.0387 REMARK 3 L33: 1.1202 L12: -0.3319 REMARK 3 L13: -0.0271 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0125 S13: 0.0244 REMARK 3 S21: 0.0203 S22: 0.0281 S23: -0.0040 REMARK 3 S31: -0.0250 S32: -0.0171 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|115 - 189} REMARK 3 ORIGIN FOR THE GROUP (A): 26.3656 -15.1075 -8.8102 REMARK 3 T TENSOR REMARK 3 T11: -0.0578 T22: 0.0350 REMARK 3 T33: 0.0285 T12: -0.0314 REMARK 3 T13: 0.0084 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.0131 L22: 0.0013 REMARK 3 L33: 0.6696 L12: -0.7236 REMARK 3 L13: 0.9101 L23: -0.4192 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0158 S13: -0.0010 REMARK 3 S21: -0.0377 S22: 0.0148 S23: -0.0224 REMARK 3 S31: -0.0066 S32: -0.0019 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|2 - 115} REMARK 3 ORIGIN FOR THE GROUP (A): -1.1075 6.2735 -25.9147 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: -0.0703 REMARK 3 T33: -0.0398 T12: -0.0942 REMARK 3 T13: -0.1520 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.2717 L22: 0.9007 REMARK 3 L33: 0.7556 L12: -1.5241 REMARK 3 L13: -0.0105 L23: -0.6328 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0234 S13: 0.0016 REMARK 3 S21: -0.0737 S22: 0.0112 S23: 0.0132 REMARK 3 S31: 0.0299 S32: -0.0243 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|116 - 244} REMARK 3 ORIGIN FOR THE GROUP (A): 16.0156 -17.8136 -20.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: -0.0771 REMARK 3 T33: -0.0555 T12: -0.0734 REMARK 3 T13: -0.0861 T23: 0.0652 REMARK 3 L TENSOR REMARK 3 L11: 0.6506 L22: 0.1010 REMARK 3 L33: 1.5422 L12: -0.2942 REMARK 3 L13: 0.7747 L23: 0.9761 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0596 S13: -0.0666 REMARK 3 S21: -0.1133 S22: -0.0164 S23: -0.0027 REMARK 3 S31: -0.0382 S32: -0.0133 S33: -0.0015 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95365 REMARK 200 MONOCHROMATOR : CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QRP, 4G8F REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM-SODIUM TARTRATE REMARK 280 TETRAHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.80800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.97500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.43800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.97500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.80800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.43800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 131 REMARK 465 LYS A 151 REMARK 465 ASN A 191 REMARK 465 ASN A 192 REMARK 465 SER A 193 REMARK 465 ILE A 194 REMARK 465 ILE A 195 REMARK 465 PRO A 196 REMARK 465 GLU A 197 REMARK 465 ASP A 198 REMARK 465 THR A 199 REMARK 465 PHE A 200 REMARK 465 PHE A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 PRO A 204 REMARK 465 GLU A 205 REMARK 465 SER A 206 REMARK 465 SER A 207 REMARK 465 ASN B 1 REMARK 465 LEU B 98 REMARK 465 ARG B 99 REMARK 465 SER B 100 REMARK 465 ASP B 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ARG A 67 CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 THR A 70 OG1 CG2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 ARG B 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 146 SG CYS B 211 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 211 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 73 58.36 -146.44 REMARK 500 ALA A 86 -178.69 -170.43 REMARK 500 ASP A 183 58.30 -91.70 REMARK 500 HIS B 155 75.08 -109.18 REMARK 500 ASN B 221 42.83 -88.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CUG RELATED DB: PDB DBREF 6CUH A 1 207 PDB 6CUH 6CUH 1 207 DBREF 6CUH B 1 245 PDB 6CUH 6CUH 1 245 SEQRES 1 A 207 GLY ASN SER VAL THR GLN MET GLU GLY PRO VAL THR LEU SEQRES 2 A 207 SER GLU GLU ALA PHE LEU THR ILE ASN CYS THR TYR THR SEQRES 3 A 207 ALA THR GLY TYR PRO SER LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 207 PRO GLY GLU GLY LEU GLN LEU LEU LEU LYS ALA THR LYS SEQRES 5 A 207 ALA ASP ASP LYS GLY SER ASN LYS GLY PHE GLU ALA THR SEQRES 6 A 207 TYR ARG LYS GLU THR THR SER PHE HIS LEU GLU LYS GLY SEQRES 7 A 207 SER VAL GLN VAL SER ASP SER ALA VAL TYR PHE CYS ALA SEQRES 8 A 207 LEU THR PRO SER GLY GLY TYR GLN LYS VAL THR PHE GLY SEQRES 9 A 207 THR GLY THR LYS LEU GLN VAL ILE PRO ASN ILE GLN ASN SEQRES 10 A 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 A 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 A 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 A 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 A 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 A 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 A 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 B 245 ASN ALA GLY VAL THR GLN THR PRO LYS PHE ARG VAL LEU SEQRES 2 B 245 LYS THR GLY GLN SER MET THR LEU LEU CYS ALA GLN ASP SEQRES 3 B 245 MET ASN HIS GLU TYR MET TYR TRP TYR ARG GLN ASP PRO SEQRES 4 B 245 GLY MET GLY LEU ARG LEU ILE HIS TYR SER VAL GLY GLU SEQRES 5 B 245 GLY THR THR ALA LYS GLY GLU VAL PRO ASP GLY TYR ASN SEQRES 6 B 245 VAL SER ARG LEU LYS LYS GLN ASN PHE LEU LEU GLY LEU SEQRES 7 B 245 GLU SER ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS SEQRES 8 B 245 ALA SER SER MET PRO GLY LEU ARG SER SER TYR GLU GLN SEQRES 9 B 245 TYR PHE GLY PRO GLY THR ARG LEU THR VAL THR GLU ASP SEQRES 10 B 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 B 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 B 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 B 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 B 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 B 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 B 245 ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS SEQRES 17 B 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 B 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 B 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET PEG A 301 7 HET PO4 A 302 5 HET ACT A 303 4 HET EDO A 304 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PEG C4 H10 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *185(H2 O) HELIX 1 AA1 GLN A 81 SER A 85 5 5 HELIX 2 AA2 ARG A 166 ASP A 169 5 4 HELIX 3 AA3 ALA A 185 PHE A 190 1 6 HELIX 4 AA4 ALA B 82 THR B 86 5 5 HELIX 5 AA5 ASP B 117 VAL B 121 5 5 HELIX 6 AA6 SER B 132 GLN B 140 1 9 HELIX 7 AA7 ALA B 199 GLN B 203 1 5 SHEET 1 AA1 2 SER A 3 GLN A 6 0 SHEET 2 AA1 2 CYS A 23 THR A 26 -1 O THR A 24 N THR A 5 SHEET 1 AA2 5 VAL A 11 SER A 14 0 SHEET 2 AA2 5 THR A 107 ILE A 112 1 O GLN A 110 N VAL A 11 SHEET 3 AA2 5 ALA A 86 THR A 93 -1 N ALA A 86 O LEU A 109 SHEET 4 AA2 5 SER A 32 GLN A 38 -1 N TYR A 36 O PHE A 89 SHEET 5 AA2 5 LEU A 44 ALA A 50 -1 O LEU A 47 N TRP A 35 SHEET 1 AA3 4 VAL A 11 SER A 14 0 SHEET 2 AA3 4 THR A 107 ILE A 112 1 O GLN A 110 N VAL A 11 SHEET 3 AA3 4 ALA A 86 THR A 93 -1 N ALA A 86 O LEU A 109 SHEET 4 AA3 4 THR A 102 PHE A 103 -1 O THR A 102 N LEU A 92 SHEET 1 AA4 4 LEU A 19 ILE A 21 0 SHEET 2 AA4 4 LEU A 75 LYS A 77 -1 O LYS A 77 N LEU A 19 SHEET 3 AA4 4 PHE A 62 THR A 65 -1 N GLU A 63 O GLU A 76 SHEET 4 AA4 4 LYS A 56 ASN A 59 -1 N ASN A 59 O PHE A 62 SHEET 1 AA5 4 ALA A 121 ARG A 126 0 SHEET 2 AA5 4 SER A 134 THR A 139 -1 O VAL A 135 N LEU A 125 SHEET 3 AA5 4 PHE A 170 SER A 179 -1 O ALA A 177 N CYS A 136 SHEET 4 AA5 4 VAL A 155 ILE A 157 -1 N TYR A 156 O TRP A 178 SHEET 1 AA6 4 ALA A 121 ARG A 126 0 SHEET 2 AA6 4 SER A 134 THR A 139 -1 O VAL A 135 N LEU A 125 SHEET 3 AA6 4 PHE A 170 SER A 179 -1 O ALA A 177 N CYS A 136 SHEET 4 AA6 4 CYS A 161 MET A 165 -1 N MET A 165 O PHE A 170 SHEET 1 AA7 4 VAL B 4 THR B 7 0 SHEET 2 AA7 4 MET B 19 GLN B 25 -1 O LEU B 22 N THR B 7 SHEET 3 AA7 4 ASN B 73 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 4 AA7 4 ASN B 65 SER B 67 -1 N ASN B 65 O GLY B 77 SHEET 1 AA8 6 PHE B 10 LYS B 14 0 SHEET 2 AA8 6 THR B 110 THR B 115 1 O THR B 115 N LEU B 13 SHEET 3 AA8 6 SER B 87 SER B 94 -1 N TYR B 89 O THR B 110 SHEET 4 AA8 6 TYR B 31 ASP B 38 -1 N TYR B 35 O PHE B 90 SHEET 5 AA8 6 GLY B 42 GLY B 51 -1 O ILE B 46 N TRP B 34 SHEET 6 AA8 6 THR B 54 LYS B 57 -1 O ALA B 56 N TYR B 48 SHEET 1 AA9 4 PHE B 10 LYS B 14 0 SHEET 2 AA9 4 THR B 110 THR B 115 1 O THR B 115 N LEU B 13 SHEET 3 AA9 4 SER B 87 SER B 94 -1 N TYR B 89 O THR B 110 SHEET 4 AA9 4 TYR B 105 PHE B 106 -1 O TYR B 105 N SER B 93 SHEET 1 AB1 4 GLU B 125 PHE B 129 0 SHEET 2 AB1 4 LYS B 141 PHE B 151 -1 O LEU B 147 N ALA B 127 SHEET 3 AB1 4 TYR B 189 SER B 198 -1 O LEU B 195 N LEU B 144 SHEET 4 AB1 4 VAL B 171 THR B 173 -1 N CYS B 172 O ARG B 194 SHEET 1 AB2 4 GLU B 125 PHE B 129 0 SHEET 2 AB2 4 LYS B 141 PHE B 151 -1 O LEU B 147 N ALA B 127 SHEET 3 AB2 4 TYR B 189 SER B 198 -1 O LEU B 195 N LEU B 144 SHEET 4 AB2 4 LEU B 178 LYS B 179 -1 N LEU B 178 O ALA B 190 SHEET 1 AB3 4 LYS B 165 VAL B 167 0 SHEET 2 AB3 4 VAL B 156 VAL B 162 -1 N VAL B 162 O LYS B 165 SHEET 3 AB3 4 HIS B 208 PHE B 215 -1 O GLN B 212 N SER B 159 SHEET 4 AB3 4 GLN B 234 TRP B 241 -1 O GLN B 234 N PHE B 215 SSBOND 1 CYS A 23 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 186 1555 1555 2.97 SSBOND 3 CYS A 161 CYS B 172 1555 1555 2.08 SSBOND 4 CYS B 23 CYS B 91 1555 1555 1.98 CISPEP 1 THR B 7 PRO B 8 0 -3.12 CISPEP 2 TYR B 152 PRO B 153 0 -0.37 SITE 1 AC1 7 PRO A 118 ASP A 119 HOH A 401 HOH A 462 SITE 2 AC1 7 HIS B 168 SER B 169 HOH B 306 SITE 1 AC2 5 GLU A 15 ASP A 169 LYS A 171 ACT A 303 SITE 2 AC2 5 HOH A 425 SITE 1 AC3 7 ASN A 114 ILE A 115 GLN A 116 PHE A 170 SITE 2 AC3 7 LYS A 171 PO4 A 302 HOH A 438 SITE 1 AC4 3 MET A 7 ASN A 22 LYS A 52 CRYST1 49.616 76.876 119.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008337 0.00000