HEADER LYASE 26-MAR-18 6CUK TITLE ENGINEERED CYTOCHROME C FROM RHODOTHERMUS MARINUS, RMA TDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; SOURCE 3 ORGANISM_COMMON: RHODOTHERMUS OBAMENSIS; SOURCE 4 ORGANISM_TAXID: 29549; SOURCE 5 GENE: CYTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBENE TRANSFERASE, SILICON-CARBON BOND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.D.LEWIS,A.R.BULLER,F.H.ARNOLD REVDAT 6 04-OCT-23 6CUK 1 REMARK REVDAT 5 10-MAR-21 6CUK 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK ATOM REVDAT 4 27-NOV-19 6CUK 1 REMARK REVDAT 3 18-JUL-18 6CUK 1 JRNL REVDAT 2 11-JUL-18 6CUK 1 JRNL REVDAT 1 27-JUN-18 6CUK 0 JRNL AUTH R.D.LEWIS,M.GARCIA-BORRAS,M.J.CHALKLEY,A.R.BULLER,K.N.HOUK, JRNL AUTH 2 S.B.J.KAN,F.H.ARNOLD JRNL TITL CATALYTIC IRON-CARBENE INTERMEDIATE REVEALED IN A JRNL TITL 2 CYTOCHROMECCARBENE TRANSFERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 7308 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29946033 JRNL DOI 10.1073/PNAS.1807027115 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1022 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 923 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1403 ; 1.719 ; 2.100 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2131 ; 1.030 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 6.236 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;37.317 ;24.694 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 169 ;12.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.991 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 146 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1177 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 189 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 494 ; 0.778 ; 1.160 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 493 ; 0.769 ; 1.157 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 628 ; 1.282 ; 1.738 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 629 ; 1.283 ; 1.741 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 527 ; 1.032 ; 1.278 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 528 ; 1.031 ; 1.279 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 776 ; 1.429 ; 1.893 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1151 ; 4.246 ;14.206 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1140 ; 4.118 ;13.858 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 13 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1943 79.0570 81.1902 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.3565 REMARK 3 T33: 0.0736 T12: 0.1307 REMARK 3 T13: 0.0122 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 6.8773 L22: 10.1560 REMARK 3 L33: 5.9570 L12: 2.8839 REMARK 3 L13: -5.1086 L23: 2.2337 REMARK 3 S TENSOR REMARK 3 S11: -0.1372 S12: 0.1638 S13: 0.0402 REMARK 3 S21: -0.6199 S22: 0.3771 S23: -0.4014 REMARK 3 S31: -0.1264 S32: 0.1116 S33: -0.2399 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6887 80.0468 89.3049 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.1125 REMARK 3 T33: 0.0925 T12: -0.0233 REMARK 3 T13: -0.0168 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.3662 L22: 10.0856 REMARK 3 L33: 5.5976 L12: 0.8753 REMARK 3 L13: -1.3462 L23: -1.7396 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: -0.1169 S13: 0.0472 REMARK 3 S21: 0.0561 S22: -0.0805 S23: -0.5191 REMARK 3 S31: -0.0924 S32: 0.2942 S33: -0.0554 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5443 62.4787 92.3364 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2025 REMARK 3 T33: 0.3409 T12: -0.0299 REMARK 3 T13: 0.0612 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.0109 L22: 4.8031 REMARK 3 L33: 6.5769 L12: 2.0873 REMARK 3 L13: -1.5937 L23: 2.1787 REMARK 3 S TENSOR REMARK 3 S11: -0.6592 S12: 0.4790 S13: -0.5878 REMARK 3 S21: -0.2159 S22: 0.3257 S23: -0.9987 REMARK 3 S31: 0.2607 S32: 0.3667 S33: 0.3335 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4664 63.0304 96.2371 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0757 REMARK 3 T33: 0.0392 T12: -0.0291 REMARK 3 T13: -0.0061 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 10.5105 L22: 3.8211 REMARK 3 L33: 4.7587 L12: -3.8370 REMARK 3 L13: 2.0215 L23: -0.5589 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0564 S13: -0.4487 REMARK 3 S21: 0.0533 S22: -0.0040 S23: 0.2692 REMARK 3 S31: 0.3600 S32: -0.2482 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0422 70.5503 92.7779 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0940 REMARK 3 T33: 0.0448 T12: -0.0118 REMARK 3 T13: -0.0017 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 5.4929 L22: 4.4218 REMARK 3 L33: 7.4400 L12: -2.9866 REMARK 3 L13: 0.8132 L23: 0.7143 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: -0.1150 S13: -0.0323 REMARK 3 S21: 0.0498 S22: -0.0020 S23: 0.1835 REMARK 3 S31: 0.0165 S32: -0.3591 S33: -0.0906 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0954 72.2910 82.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.1395 REMARK 3 T33: 0.0449 T12: 0.0000 REMARK 3 T13: 0.0068 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.9196 L22: 1.9534 REMARK 3 L33: 3.4589 L12: -0.3197 REMARK 3 L13: -1.5742 L23: 2.1918 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.2897 S13: 0.0086 REMARK 3 S21: 0.0764 S22: -0.1633 S23: 0.1251 REMARK 3 S31: 0.1161 S32: -0.3720 S33: 0.1987 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3325 74.6468 75.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.1948 REMARK 3 T33: 0.0868 T12: 0.0343 REMARK 3 T13: -0.0187 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.7114 L22: 9.5177 REMARK 3 L33: 9.1772 L12: -3.2790 REMARK 3 L13: -0.3047 L23: 7.4917 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0501 S13: -0.0683 REMARK 3 S21: -0.2027 S22: -0.1877 S23: 0.2572 REMARK 3 S31: -0.2937 S32: -0.1806 S33: 0.2151 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0159 74.8872 83.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.1033 REMARK 3 T33: 0.0312 T12: 0.0009 REMARK 3 T13: -0.0062 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.9764 L22: 1.0960 REMARK 3 L33: 2.5853 L12: 0.9403 REMARK 3 L13: 0.3786 L23: 0.4354 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.1882 S13: 0.0557 REMARK 3 S21: -0.0013 S22: 0.0620 S23: -0.0390 REMARK 3 S31: -0.0823 S32: 0.0172 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8319 86.7131 80.7329 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.0888 REMARK 3 T33: 0.1294 T12: -0.0397 REMARK 3 T13: -0.0542 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 7.8351 L22: 5.3512 REMARK 3 L33: 11.2137 L12: -4.1173 REMARK 3 L13: -4.4574 L23: 1.5172 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: 0.2381 S13: 0.8136 REMARK 3 S21: 0.0574 S22: 0.2615 S23: -0.5439 REMARK 3 S31: -1.1807 S32: 0.0062 S33: -0.1462 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6773 82.5156 75.1154 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.2934 REMARK 3 T33: 0.1628 T12: -0.1038 REMARK 3 T13: -0.0370 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 7.7941 L22: 7.2557 REMARK 3 L33: 9.5302 L12: -1.1588 REMARK 3 L13: -3.6562 L23: -6.8815 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: 0.2853 S13: 0.9816 REMARK 3 S21: -0.1911 S22: 0.3712 S23: -0.1820 REMARK 3 S31: 0.1646 S32: -0.5061 S33: -0.4532 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0232 83.6968 73.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.2943 REMARK 3 T33: 0.2712 T12: -0.0015 REMARK 3 T13: 0.1478 T23: 0.2015 REMARK 3 L TENSOR REMARK 3 L11: 12.8130 L22: 17.1809 REMARK 3 L33: 6.4224 L12: 14.0367 REMARK 3 L13: 5.7876 L23: 3.7497 REMARK 3 S TENSOR REMARK 3 S11: -0.2892 S12: 0.1680 S13: -0.0244 REMARK 3 S21: -0.4570 S22: 0.3274 S23: -0.1139 REMARK 3 S31: -0.0156 S32: -0.2418 S33: -0.0382 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8529 84.6156 86.7181 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.2331 REMARK 3 T33: 0.1936 T12: -0.0210 REMARK 3 T13: 0.0680 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.7755 L22: 3.4975 REMARK 3 L33: 31.2904 L12: -0.7798 REMARK 3 L13: 3.8387 L23: -9.9680 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0730 S13: 0.2163 REMARK 3 S21: 0.0680 S22: 0.2165 S23: -0.0107 REMARK 3 S31: -0.6112 S32: -0.1363 S33: -0.2096 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7735 77.7876 97.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0640 REMARK 3 T33: 0.0393 T12: -0.0179 REMARK 3 T13: 0.0019 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 6.4113 L22: 8.1740 REMARK 3 L33: 6.0333 L12: -3.8545 REMARK 3 L13: 0.8770 L23: -0.2706 REMARK 3 S TENSOR REMARK 3 S11: 0.1436 S12: 0.2230 S13: 0.2669 REMARK 3 S21: 0.0594 S22: -0.1203 S23: 0.1234 REMARK 3 S31: -0.3124 S32: -0.1327 S33: -0.0233 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3463 69.5978 91.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0800 REMARK 3 T33: 0.0407 T12: 0.0139 REMARK 3 T13: -0.0007 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4452 L22: 6.3122 REMARK 3 L33: 4.4237 L12: 1.5032 REMARK 3 L13: 0.2889 L23: 2.0746 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.0318 S13: -0.0138 REMARK 3 S21: 0.0839 S22: -0.0476 S23: -0.0932 REMARK 3 S31: 0.0953 S32: -0.0412 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0696 61.4895 85.6684 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.0755 REMARK 3 T33: 0.2358 T12: -0.0027 REMARK 3 T13: -0.0021 T23: -0.1032 REMARK 3 L TENSOR REMARK 3 L11: 6.3423 L22: 3.7924 REMARK 3 L33: 12.2321 L12: -2.1515 REMARK 3 L13: 0.0020 L23: -0.8985 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.4797 S13: -0.9575 REMARK 3 S21: -0.3415 S22: 0.0519 S23: -0.1751 REMARK 3 S31: 1.3589 S32: -0.0311 S33: -0.1736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 38.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP5 REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.43-1.48 M (NH4)2SO4 300-400 MM NASCN REMARK 280 1.5% ISOPROPANOL 14.0 MG/ML PROTEIN IN 20 MM TRIS PH 7.5 2:1 REMARK 280 PROTEIN TO WELL SOLUTION, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.76667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.76667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ASN A 123 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 55 -122.17 -147.54 REMARK 500 PHE A 55 -122.17 -135.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HEC A 201 NA 92.1 REMARK 620 3 HEC A 201 NB 91.7 90.2 REMARK 620 4 HEC A 201 NC 88.1 179.7 89.5 REMARK 620 5 HEC A 201 ND 88.3 89.8 180.0 90.5 REMARK 620 6 HOH A 335 O 176.6 86.3 91.3 93.5 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 DBREF 6CUK A 8 124 UNP B3FQS5 B3FQS5_RHOMR 36 152 SEQADV 6CUK HIS A 2 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK HIS A 3 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK HIS A 4 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK HIS A 5 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK HIS A 6 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK HIS A 7 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUK THR A 75 UNP B3FQS5 VAL 103 ENGINEERED MUTATION SEQADV 6CUK ASP A 100 UNP B3FQS5 MET 128 ENGINEERED MUTATION SEQADV 6CUK GLU A 103 UNP B3FQS5 MET 131 ENGINEERED MUTATION SEQRES 1 A 123 HIS HIS HIS HIS HIS HIS GLN ASP PRO GLU ALA LEU ALA SEQRES 2 A 123 ALA GLU ILE GLY PRO VAL LYS GLN VAL SER LEU GLY GLU SEQRES 3 A 123 GLN ILE ASP ALA ALA LEU ALA GLN GLN GLY GLU GLN LEU SEQRES 4 A 123 PHE ASN THR TYR CYS THR ALA CYS HIS ARG LEU ASP GLU SEQRES 5 A 123 ARG PHE ILE GLY PRO ALA LEU ARG ASP VAL THR LYS ARG SEQRES 6 A 123 ARG GLY PRO VAL TYR ILE MET ASN THR MET LEU ASN PRO SEQRES 7 A 123 ASN GLY MET ILE GLN ARG HIS PRO VAL MET LYS GLN LEU SEQRES 8 A 123 VAL GLN GLU TYR GLY THR MET ASP THR ASP GLU ALA LEU SEQRES 9 A 123 SER GLU GLU GLN ALA ARG ALA ILE LEU GLU TYR LEU ARG SEQRES 10 A 123 GLN VAL ALA GLU ASN GLN HET HEC A 201 43 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 HOH *84(H2 O) HELIX 1 AA1 ASP A 9 GLY A 18 1 10 HELIX 2 AA2 ASP A 30 CYS A 45 1 16 HELIX 3 AA3 THR A 46 CYS A 48 5 3 HELIX 4 AA4 ASP A 62 ARG A 67 1 6 HELIX 5 AA5 GLY A 68 ASN A 78 1 11 HELIX 6 AA6 ASN A 78 HIS A 86 1 9 HELIX 7 AA7 HIS A 86 GLY A 97 1 12 HELIX 8 AA8 SER A 106 GLU A 122 1 17 LINK SG CYS A 45 CAB HEC A 201 1555 1555 1.70 LINK SG CYS A 48 CAC HEC A 201 1555 1555 1.71 LINK NE2 HIS A 49 FE HEC A 201 1555 1555 1.99 LINK FE HEC A 201 O HOH A 335 1555 1555 2.08 CISPEP 1 GLY A 18 PRO A 19 0 11.25 SITE 1 AC1 18 TYR A 44 CYS A 45 CYS A 48 HIS A 49 SITE 2 AC1 18 PRO A 58 ARG A 66 ARG A 67 TYR A 71 SITE 3 AC1 18 THR A 75 LEU A 92 VAL A 93 TYR A 96 SITE 4 AC1 18 GLY A 97 ASP A 100 THR A 101 GLU A 103 SITE 5 AC1 18 LEU A 105 HOH A 335 CRYST1 60.038 60.038 77.300 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016656 0.009616 0.000000 0.00000 SCALE2 0.000000 0.019233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012937 0.00000