HEADER LYASE 26-MAR-18 6CUN TITLE ENGINEERED CYTOCHROME C FROM RHODOTHERMUS MARINUS (RMA TDE) BOUND TO TITLE 2 CARBENE INTERMEDIATE (1-ETHOXY-1-OXOPROPAN-2-YLIDENE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; SOURCE 3 ORGANISM_COMMON: RHODOTHERMUS OBAMENSIS; SOURCE 4 ORGANISM_TAXID: 29549; SOURCE 5 GENE: CYTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBENE TRANSFERASE, SILICON-CARBON BOND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.D.LEWIS,A.R.BULLER,F.H.ARNOLD REVDAT 6 04-OCT-23 6CUN 1 REMARK REVDAT 5 10-MAR-21 6CUN 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 27-NOV-19 6CUN 1 REMARK REVDAT 3 18-JUL-18 6CUN 1 JRNL REVDAT 2 11-JUL-18 6CUN 1 JRNL REVDAT 1 27-JUN-18 6CUN 0 JRNL AUTH R.D.LEWIS,M.GARCIA-BORRAS,M.J.CHALKLEY,A.R.BULLER,K.N.HOUK, JRNL AUTH 2 S.B.J.KAN,F.H.ARNOLD JRNL TITL CATALYTIC IRON-CARBENE INTERMEDIATE REVEALED IN A JRNL TITL 2 CYTOCHROMECCARBENE TRANSFERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 7308 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29946033 JRNL DOI 10.1073/PNAS.1807027115 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 919 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 848 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1251 ; 1.814 ; 2.128 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1940 ; 1.014 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 110 ; 6.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;37.652 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 143 ;10.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.403 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 134 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1010 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 167 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 446 ; 0.899 ; 1.236 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 445 ; 0.899 ; 1.234 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 554 ; 1.430 ; 1.845 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 555 ; 1.429 ; 1.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 473 ; 1.275 ; 1.357 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 474 ; 1.274 ; 1.361 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 698 ; 1.791 ; 2.007 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1030 ; 5.108 ;15.785 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1016 ; 4.928 ;15.127 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2303 -26.9337 4.8625 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.1552 REMARK 3 T33: 0.0470 T12: -0.0335 REMARK 3 T13: -0.0140 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 10.0653 L22: 8.2410 REMARK 3 L33: 5.4230 L12: 2.7467 REMARK 3 L13: -0.0211 L23: -3.3225 REMARK 3 S TENSOR REMARK 3 S11: -0.1446 S12: 0.6686 S13: -0.0773 REMARK 3 S21: -0.5212 S22: 0.2366 S23: 0.2666 REMARK 3 S31: 0.1288 S32: -0.4079 S33: -0.0919 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7377 -25.7474 12.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.1287 REMARK 3 T33: 0.0685 T12: -0.0224 REMARK 3 T13: 0.0152 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 4.3863 L22: 6.4546 REMARK 3 L33: 4.4730 L12: -0.3165 REMARK 3 L13: -0.2485 L23: 0.8855 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1583 S13: 0.0821 REMARK 3 S21: -0.1032 S22: 0.0097 S23: 0.1744 REMARK 3 S31: -0.1880 S32: -0.1334 S33: -0.0544 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9612 -9.4519 17.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1139 REMARK 3 T33: 0.1424 T12: 0.0630 REMARK 3 T13: -0.0776 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 10.0378 L22: 6.5329 REMARK 3 L33: 5.8441 L12: -3.4919 REMARK 3 L13: 3.5162 L23: -4.4652 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.1204 S13: 0.3520 REMARK 3 S21: -0.1993 S22: -0.0037 S23: 0.5333 REMARK 3 S31: -0.4808 S32: -0.4322 S33: -0.0403 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3699 -17.7401 16.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.1098 REMARK 3 T33: 0.0406 T12: -0.0116 REMARK 3 T13: 0.0013 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 5.3336 L22: 5.8000 REMARK 3 L33: 4.8828 L12: -3.9586 REMARK 3 L13: -1.0165 L23: 1.0430 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.1998 S13: 0.1701 REMARK 3 S21: 0.0854 S22: 0.0161 S23: -0.2209 REMARK 3 S31: -0.1287 S32: 0.3135 S33: -0.0710 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9564 -22.7092 6.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.1420 REMARK 3 T33: 0.0485 T12: 0.0184 REMARK 3 T13: -0.0004 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 4.2465 L22: 2.9721 REMARK 3 L33: 2.5696 L12: -0.3331 REMARK 3 L13: 2.2406 L23: -1.3593 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.2646 S13: -0.0548 REMARK 3 S21: -0.0551 S22: -0.1680 S23: -0.1291 REMARK 3 S31: 0.0259 S32: 0.4437 S33: 0.1839 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5909 -19.3685 -0.4612 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.3112 REMARK 3 T33: 0.0661 T12: -0.0620 REMARK 3 T13: 0.0586 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 2.4601 L22: 13.7580 REMARK 3 L33: 5.6596 L12: -5.7246 REMARK 3 L13: -0.2474 L23: -0.9931 REMARK 3 S TENSOR REMARK 3 S11: 0.2662 S12: 0.0077 S13: 0.1546 REMARK 3 S21: -0.6375 S22: -0.2528 S23: -0.3607 REMARK 3 S31: 0.0473 S32: 0.8521 S33: -0.0135 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4363 -20.5360 1.8374 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.1248 REMARK 3 T33: 0.0222 T12: -0.0018 REMARK 3 T13: 0.0155 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.7741 L22: 4.4395 REMARK 3 L33: 4.8138 L12: -1.1711 REMARK 3 L13: -0.2446 L23: 1.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.2092 S13: -0.0946 REMARK 3 S21: -0.0282 S22: 0.0438 S23: 0.0510 REMARK 3 S31: 0.1552 S32: 0.2954 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8406 -16.1360 1.6384 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.1000 REMARK 3 T33: 0.0346 T12: 0.0016 REMARK 3 T13: 0.0019 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 6.4497 L22: 4.0628 REMARK 3 L33: 6.7918 L12: 1.5157 REMARK 3 L13: 0.8135 L23: 1.5492 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.2775 S13: 0.3524 REMARK 3 S21: -0.2183 S22: 0.1097 S23: 0.0967 REMARK 3 S31: -0.3748 S32: -0.1346 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1794 -23.5277 7.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0950 REMARK 3 T33: 0.0292 T12: -0.0101 REMARK 3 T13: 0.0080 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.1827 L22: 1.7758 REMARK 3 L33: 3.4550 L12: 0.7481 REMARK 3 L13: -1.1148 L23: -1.7412 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.1632 S13: -0.0012 REMARK 3 S21: -0.0260 S22: 0.1286 S23: 0.0103 REMARK 3 S31: 0.0562 S32: -0.1952 S33: -0.0753 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9931 -32.0228 8.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.0685 REMARK 3 T33: 0.0863 T12: 0.0075 REMARK 3 T13: 0.0071 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.1433 L22: 8.2498 REMARK 3 L33: 6.0682 L12: 1.6172 REMARK 3 L13: 0.8720 L23: 3.2508 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.2365 S13: -0.4123 REMARK 3 S21: -0.0562 S22: 0.2029 S23: -0.3583 REMARK 3 S31: 0.4891 S32: 0.2242 S33: -0.2015 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5408 -33.0748 1.9011 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.1190 REMARK 3 T33: 0.0830 T12: -0.0576 REMARK 3 T13: -0.0014 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 7.0644 L22: 12.2722 REMARK 3 L33: 9.3772 L12: 1.1515 REMARK 3 L13: -0.1459 L23: -0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: 0.0550 S13: -0.4977 REMARK 3 S21: -0.0698 S22: 0.0504 S23: 0.4860 REMARK 3 S31: 0.6505 S32: -0.1544 S33: -0.1533 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0158 -31.8968 -3.9737 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1137 REMARK 3 T33: 0.0434 T12: -0.0245 REMARK 3 T13: 0.0162 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 13.4789 L22: 7.6162 REMARK 3 L33: 12.0073 L12: 0.6646 REMARK 3 L13: 1.0685 L23: 0.6169 REMARK 3 S TENSOR REMARK 3 S11: -0.1788 S12: 0.2084 S13: -0.3646 REMARK 3 S21: -0.5251 S22: 0.0431 S23: 0.0826 REMARK 3 S31: 0.2095 S32: 0.0825 S33: 0.1357 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9260 -31.5832 6.4052 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.5033 REMARK 3 T33: 0.1650 T12: -0.0347 REMARK 3 T13: 0.1138 T23: -0.1411 REMARK 3 L TENSOR REMARK 3 L11: 0.5571 L22: 0.9764 REMARK 3 L33: 7.9267 L12: -0.7082 REMARK 3 L13: -2.0881 L23: 2.6224 REMARK 3 S TENSOR REMARK 3 S11: -0.2200 S12: -0.3017 S13: -0.0263 REMARK 3 S21: 0.2529 S22: 0.2574 S23: 0.0112 REMARK 3 S31: 0.6331 S32: 1.3084 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9268 -19.3230 15.9354 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0715 REMARK 3 T33: 0.0344 T12: 0.0095 REMARK 3 T13: 0.0091 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.0846 L22: 5.1960 REMARK 3 L33: 4.6826 L12: 0.9258 REMARK 3 L13: 0.1992 L23: -2.3273 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0102 S13: -0.0276 REMARK 3 S21: 0.1285 S22: -0.0168 S23: 0.0740 REMARK 3 S31: -0.0125 S32: -0.0134 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6678 -9.9729 8.1959 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.1213 REMARK 3 T33: 0.3112 T12: 0.0383 REMARK 3 T13: 0.1186 T23: 0.1781 REMARK 3 L TENSOR REMARK 3 L11: 11.6971 L22: 5.5859 REMARK 3 L33: 16.7580 L12: -7.0258 REMARK 3 L13: 2.5210 L23: 2.8453 REMARK 3 S TENSOR REMARK 3 S11: 0.1854 S12: 0.6556 S13: 0.8283 REMARK 3 S21: -0.4429 S22: -0.1829 S23: -0.3287 REMARK 3 S31: -1.5216 S32: 0.4677 S33: -0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 38.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6CUK REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.43-1.48 M (NH4)2SO4 300-400 MM NASCN REMARK 280 1.5% ISOPROPANOL 2:1 RATIO OF RMA TDE (14 MG/ML IN 20MM TRIS HCL REMARK 280 PH 7.5) TO WELL SOLUTION CRYSTALS WERE SOAKED IN WELL SOLUTION REMARK 280 SUPPLEMENTED WITH 40 MM ETHYL 2-DIAZOPROPANOATE UNDER AEROBIC REMARK 280 CONDITIONS FOR 30 MINUTES, FOLLOWED BY ADDITION OF SODIUM REMARK 280 DITHIONITE (50 MM) AND FREEZING WITH LIQUID NITROGEN, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.48800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.74400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.74400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.48800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 100 REMARK 465 THR A 101 REMARK 465 ASP A 102 REMARK 465 GLN A 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 MET A 99 CG SD CE REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ASN A 123 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEC A 201 CX6 CA1 A 202 1.92 REMARK 500 O HOH A 311 O HOH A 373 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 55 -124.86 -141.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HEC A 201 NA 91.4 REMARK 620 3 HEC A 201 NB 90.1 90.5 REMARK 620 4 HEC A 201 NC 89.0 179.3 90.0 REMARK 620 5 HEC A 201 ND 88.3 89.4 178.4 90.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA1 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CUK RELATED DB: PDB REMARK 900 6CUK CONTAINS THE SAME PROTEIN WITHOUT THE CARBENE LIGAND DBREF 6CUN A 8 124 UNP B3FQS5 B3FQS5_RHOMR 36 152 SEQADV 6CUN HIS A 2 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN HIS A 3 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN HIS A 4 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN HIS A 5 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN HIS A 6 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN HIS A 7 UNP B3FQS5 EXPRESSION TAG SEQADV 6CUN THR A 75 UNP B3FQS5 VAL 103 ENGINEERED MUTATION SEQADV 6CUN ASP A 100 UNP B3FQS5 MET 128 ENGINEERED MUTATION SEQADV 6CUN GLU A 103 UNP B3FQS5 MET 131 ENGINEERED MUTATION SEQRES 1 A 123 HIS HIS HIS HIS HIS HIS GLN ASP PRO GLU ALA LEU ALA SEQRES 2 A 123 ALA GLU ILE GLY PRO VAL LYS GLN VAL SER LEU GLY GLU SEQRES 3 A 123 GLN ILE ASP ALA ALA LEU ALA GLN GLN GLY GLU GLN LEU SEQRES 4 A 123 PHE ASN THR TYR CYS THR ALA CYS HIS ARG LEU ASP GLU SEQRES 5 A 123 ARG PHE ILE GLY PRO ALA LEU ARG ASP VAL THR LYS ARG SEQRES 6 A 123 ARG GLY PRO VAL TYR ILE MET ASN THR MET LEU ASN PRO SEQRES 7 A 123 ASN GLY MET ILE GLN ARG HIS PRO VAL MET LYS GLN LEU SEQRES 8 A 123 VAL GLN GLU TYR GLY THR MET ASP THR ASP GLU ALA LEU SEQRES 9 A 123 SER GLU GLU GLN ALA ARG ALA ILE LEU GLU TYR LEU ARG SEQRES 10 A 123 GLN VAL ALA GLU ASN GLN HET HEC A 201 43 HET CA1 A 202 7 HETNAM HEC HEME C HETNAM CA1 ETHYL PROPIONATE FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 CA1 C5 H10 O2 FORMUL 4 HOH *100(H2 O) HELIX 1 AA1 ASP A 9 GLY A 18 1 10 HELIX 2 AA2 ASP A 30 TYR A 44 1 15 HELIX 3 AA3 CYS A 45 CYS A 48 5 4 HELIX 4 AA4 ASP A 62 ARG A 67 1 6 HELIX 5 AA5 GLY A 68 ASN A 78 1 11 HELIX 6 AA6 ASN A 78 HIS A 86 1 9 HELIX 7 AA7 HIS A 86 GLY A 97 1 12 HELIX 8 AA8 SER A 106 ASN A 123 1 18 LINK SG CYS A 45 CAB HEC A 201 1555 1555 1.71 LINK SG CYS A 48 CAC HEC A 201 1555 1555 1.71 LINK NE2 HIS A 49 FE HEC A 201 1555 1555 2.06 CISPEP 1 GLY A 18 PRO A 19 0 8.46 SITE 1 AC1 15 TYR A 44 CYS A 45 CYS A 48 HIS A 49 SITE 2 AC1 15 PRO A 58 ARG A 66 ARG A 67 TYR A 71 SITE 3 AC1 15 THR A 75 LEU A 92 VAL A 93 TYR A 96 SITE 4 AC1 15 GLY A 97 LEU A 105 CA1 A 202 SITE 1 AC2 4 THR A 75 PRO A 79 ILE A 83 HEC A 201 CRYST1 60.343 60.343 77.232 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016572 0.009568 0.000000 0.00000 SCALE2 0.000000 0.019136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012948 0.00000