HEADER CELL ADHESION, SIGNALING PROTEIN 27-MAR-18 6CV7 TITLE MOUSE PROTOCADHERIN-15 EXTRACELLULAR CADHERIN DOMAINS 1 THROUGH 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-15; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDH15; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS CADHERIN, HAIR CELLS, HEARING, DIMER, CELL ADHESION, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.DIONNE,L.SHAPIRO REVDAT 4 04-OCT-23 6CV7 1 REMARK REVDAT 3 23-JUN-21 6CV7 1 JRNL HETSYN REVDAT 2 29-JUL-20 6CV7 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 01-AUG-18 6CV7 0 JRNL AUTH G.DIONNE,X.QIU,M.RAPP,X.LIANG,B.ZHAO,G.PENG,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,R.RUBINSTEIN,C.S.POTTER,B.CARRAGHER,B.HONIG, JRNL AUTH 3 U.MULLER,L.SHAPIRO JRNL TITL MECHANOTRANSDUCTION BY PCDH15 RELIES ON A NOVEL CIS-DIMERIC JRNL TITL 2 ARCHITECTURE. JRNL REF NEURON V. 99 480 2018 JRNL REFN ISSN 0896-6273 JRNL PMID 30057206 JRNL DOI 10.1016/J.NEURON.2018.07.006 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 73872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 99.2818 - 5.0134 1.00 3017 160 0.1604 0.1616 REMARK 3 2 5.0134 - 3.9792 1.00 2822 149 0.1345 0.1498 REMARK 3 3 3.9792 - 3.4762 1.00 2796 147 0.1626 0.1852 REMARK 3 4 3.4762 - 3.1584 1.00 2766 145 0.1643 0.1871 REMARK 3 5 3.1584 - 2.9320 1.00 2752 144 0.1688 0.1660 REMARK 3 6 2.9320 - 2.7591 1.00 2732 145 0.1694 0.1977 REMARK 3 7 2.7591 - 2.6209 1.00 2742 144 0.1697 0.1957 REMARK 3 8 2.6209 - 2.5068 1.00 2717 142 0.1632 0.1864 REMARK 3 9 2.5068 - 2.4103 1.00 2712 144 0.1625 0.2028 REMARK 3 10 2.4103 - 2.3271 1.00 2708 142 0.1579 0.1710 REMARK 3 11 2.3271 - 2.2543 1.00 2713 143 0.1609 0.1738 REMARK 3 12 2.2543 - 2.1899 1.00 2706 142 0.1591 0.1976 REMARK 3 13 2.1899 - 2.1322 1.00 2675 141 0.1672 0.2348 REMARK 3 14 2.1322 - 2.0802 1.00 2709 143 0.1703 0.2094 REMARK 3 15 2.0802 - 2.0329 1.00 2683 141 0.1726 0.1897 REMARK 3 16 2.0329 - 1.9897 1.00 2690 141 0.1751 0.2533 REMARK 3 17 1.9897 - 1.9499 1.00 2687 141 0.1834 0.1868 REMARK 3 18 1.9499 - 1.9131 1.00 2669 141 0.1918 0.1978 REMARK 3 19 1.9131 - 1.8789 1.00 2680 141 0.2016 0.2233 REMARK 3 20 1.8789 - 1.8470 1.00 2668 140 0.2142 0.2021 REMARK 3 21 1.8470 - 1.8172 1.00 2701 143 0.2357 0.2455 REMARK 3 22 1.8172 - 1.7893 1.00 2664 140 0.2479 0.2626 REMARK 3 23 1.7893 - 1.7630 1.00 2674 141 0.2688 0.3083 REMARK 3 24 1.7630 - 1.7381 1.00 2671 140 0.3149 0.3362 REMARK 3 25 1.7381 - 1.7146 1.00 2683 141 0.3623 0.3798 REMARK 3 26 1.7146 - 1.6924 0.81 2141 113 0.4068 0.3825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.062 3187 REMARK 3 ANGLE : 1.645 4293 REMARK 3 CHIRALITY : 0.100 515 REMARK 3 PLANARITY : 0.010 558 REMARK 3 DIHEDRAL : 13.062 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.3567 -28.4187 178.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.2496 REMARK 3 T33: 0.1593 T12: 0.0277 REMARK 3 T13: 0.0011 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 4.4132 L22: 2.9143 REMARK 3 L33: 1.7240 L12: -2.2988 REMARK 3 L13: -1.5655 L23: 1.0655 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: -0.1024 S13: 0.0147 REMARK 3 S21: 0.1678 S22: 0.1167 S23: -0.1192 REMARK 3 S31: -0.0609 S32: 0.2293 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.9286 6.8701 185.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.1926 REMARK 3 T33: 0.1945 T12: 0.0147 REMARK 3 T13: 0.0084 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 5.3975 REMARK 3 L33: 0.9855 L12: -2.1783 REMARK 3 L13: -0.7843 L23: 1.3381 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: -0.0493 S13: -0.0635 REMARK 3 S21: 0.2688 S22: 0.0836 S23: 0.1650 REMARK 3 S31: 0.1008 S32: -0.0493 S33: 0.0616 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9334 46.0669 197.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2618 REMARK 3 T33: 0.2535 T12: 0.0647 REMARK 3 T13: 0.0352 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.9497 L22: 4.2849 REMARK 3 L33: 1.2932 L12: -2.3103 REMARK 3 L13: -0.5777 L23: 0.8596 REMARK 3 S TENSOR REMARK 3 S11: -0.2105 S12: -0.1407 S13: 0.0658 REMARK 3 S21: 0.3908 S22: 0.1448 S23: 0.2271 REMARK 3 S31: -0.1038 S32: -0.1769 S33: 0.0681 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.692 REMARK 200 RESOLUTION RANGE LOW (A) : 99.111 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.11540 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4APX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.67400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.33700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.00550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.66850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 143.34250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 114.67400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 57.33700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.66850 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 86.00550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 143.34250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 57.22200 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 99.11141 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 372.69050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLU A 367 REMARK 465 ASN A 368 REMARK 465 ASN A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 58.93 -91.06 REMARK 500 ASP A 61 18.99 59.19 REMARK 500 LEU A 268 -0.62 69.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 988 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE1 REMARK 620 2 GLU A 28 OE2 91.3 REMARK 620 3 ASP A 83 OD1 77.5 87.3 REMARK 620 4 ASP A 85 OD2 88.8 174.5 87.4 REMARK 620 5 ASP A 121 OD2 101.6 84.5 171.7 100.9 REMARK 620 6 HOH A 848 O 170.4 96.8 97.6 82.7 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE2 REMARK 620 2 ASP A 85 OD1 107.4 REMARK 620 3 ASP A 85 OD2 89.0 53.3 REMARK 620 4 ASP A 118 OD1 82.3 79.0 126.1 REMARK 620 5 ARG A 119 O 85.8 155.2 150.2 82.2 REMARK 620 6 ASP A 121 OD1 89.4 124.8 75.6 156.3 75.0 REMARK 620 7 ASP A 159 OD1 168.5 82.1 91.9 106.3 87.8 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 120 OD1 REMARK 620 2 ASN A 122 O 102.9 REMARK 620 3 ASP A 157 OD1 145.2 94.8 REMARK 620 4 ASP A 157 OD2 159.5 85.8 49.7 REMARK 620 5 ASP A 159 OD2 73.2 77.1 82.1 127.2 REMARK 620 6 ASN A 163 O 82.7 174.4 80.9 88.6 105.6 REMARK 620 7 ASP A 215 OD2 77.3 91.9 132.3 83.9 145.1 88.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 137 OE1 REMARK 620 2 ASP A 236 OD1 84.5 REMARK 620 3 GLY A 237 O 83.6 88.5 REMARK 620 4 ASP A 239 OD1 89.7 168.3 80.7 REMARK 620 5 ASP A 289 OD1 166.6 97.0 83.2 86.3 REMARK 620 6 HOH A 885 O 98.9 95.9 175.1 95.0 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD1 REMARK 620 2 LEU A 240 O 87.8 REMARK 620 3 ASP A 287 OD1 170.2 82.7 REMARK 620 4 ASP A 287 OD2 137.2 133.1 51.5 REMARK 620 5 ASP A 289 OD2 89.0 79.3 91.7 108.2 REMARK 620 6 GLN A 348 OE1 88.3 86.4 88.6 83.3 165.5 REMARK 620 7 HOH A 507 O 80.1 167.0 109.6 59.9 95.7 97.9 REMARK 620 N 1 2 3 4 5 6 DBREF 6CV7 A 1 369 UNP Q99PJ1 PCD15_MOUSE 27 395 SEQADV 6CV7 HIS A 370 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 371 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 372 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 373 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 374 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 375 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 376 UNP Q99PJ1 EXPRESSION TAG SEQADV 6CV7 HIS A 377 UNP Q99PJ1 EXPRESSION TAG SEQRES 1 A 377 GLN TYR ASP ASP ASP TRP GLN TYR GLU ASP CYS LYS LEU SEQRES 2 A 377 ALA ARG GLY GLY PRO PRO ALA THR ILE VAL ALA ILE ASP SEQRES 3 A 377 GLU GLU SER ARG ASN GLY THR ILE LEU VAL ASP ASN MET SEQRES 4 A 377 LEU ILE LYS GLY THR ALA GLY GLY PRO ASP PRO THR ILE SEQRES 5 A 377 GLU LEU SER LEU LYS ASP ASN VAL ASP TYR TRP VAL LEU SEQRES 6 A 377 LEU ASP PRO VAL LYS GLN MET LEU PHE LEU ASN SER THR SEQRES 7 A 377 GLY ARG VAL LEU ASP ARG ASP PRO PRO MET ASN ILE HIS SEQRES 8 A 377 SER ILE VAL VAL GLN VAL GLN CYS VAL ASN LYS LYS VAL SEQRES 9 A 377 GLY THR VAL ILE TYR HIS GLU VAL ARG ILE VAL VAL ARG SEQRES 10 A 377 ASP ARG ASN ASP ASN SER PRO THR PHE LYS HIS GLU SER SEQRES 11 A 377 TYR TYR ALA THR VAL ASN GLU LEU THR PRO VAL GLY THR SEQRES 12 A 377 THR ILE PHE THR GLY PHE SER GLY ASP ASN GLY ALA THR SEQRES 13 A 377 ASP ILE ASP ASP GLY PRO ASN GLY GLN ILE GLU TYR VAL SEQRES 14 A 377 ILE GLN TYR ASN PRO GLU ASP PRO THR SER ASN ASP THR SEQRES 15 A 377 PHE GLU ILE PRO LEU MET LEU THR GLY ASN VAL VAL LEU SEQRES 16 A 377 ARG LYS ARG LEU ASN TYR GLU ASP LYS THR ARG TYR TYR SEQRES 17 A 377 VAL ILE ILE GLN ALA ASN ASP ARG ALA GLN ASN LEU ASN SEQRES 18 A 377 GLU ARG ARG THR THR THR THR THR LEU THR VAL ASP VAL SEQRES 19 A 377 LEU ASP GLY ASP ASP LEU GLY PRO MET PHE LEU PRO CYS SEQRES 20 A 377 VAL LEU VAL PRO ASN THR ARG ASP CYS ARG PRO LEU THR SEQRES 21 A 377 TYR GLN ALA ALA ILE PRO GLU LEU ARG THR PRO GLU GLU SEQRES 22 A 377 LEU ASN PRO ILE LEU VAL THR PRO PRO ILE GLN ALA ILE SEQRES 23 A 377 ASP GLN ASP ARG ASN ILE GLN PRO PRO SER ASP ARG PRO SEQRES 24 A 377 GLY ILE LEU TYR SER ILE LEU VAL GLY THR PRO GLU ASP SEQRES 25 A 377 TYR PRO ARG PHE PHE HIS MET HIS PRO ARG THR ALA GLU SEQRES 26 A 377 LEU THR LEU LEU GLU PRO VAL ASN ARG ASP PHE HIS GLN SEQRES 27 A 377 LYS PHE ASP LEU VAL ILE LYS ALA GLU GLN ASP ASN GLY SEQRES 28 A 377 HIS PRO LEU PRO ALA PHE ALA SER LEU HIS ILE GLU ILE SEQRES 29 A 377 LEU ASP GLU ASN ASN HIS HIS HIS HIS HIS HIS HIS HIS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET MAN A 411 11 HET MAN A 412 11 HET MAN A 413 11 HET MAN A 414 11 HET MAN A 415 11 HET NAG A 416 14 HET NAG A 417 14 HET NAG A 418 14 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 CA 5(CA 2+) FORMUL 7 EDO 5(C2 H6 O2) FORMUL 12 MAN 5(C6 H12 O6) FORMUL 17 NAG 3(C8 H15 N O6) FORMUL 20 HOH *488(H2 O) HELIX 1 AA1 ASP A 3 GLN A 7 5 5 HELIX 2 AA2 ASN A 59 TYR A 62 5 4 HELIX 3 AA3 ASP A 160 GLY A 164 5 5 HELIX 4 AA4 THR A 178 THR A 182 1 5 HELIX 5 AA5 ASN A 219 ARG A 223 5 5 HELIX 6 AA6 THR A 270 ASN A 275 1 6 HELIX 7 AA7 PRO A 294 ARG A 298 5 5 HELIX 8 AA8 ASP A 312 PHE A 316 1 5 SHEET 1 AA1 4 THR A 21 ASP A 26 0 SHEET 2 AA1 4 VAL A 107 ARG A 117 1 O ARG A 117 N ILE A 25 SHEET 3 AA1 4 SER A 92 ASN A 101 -1 N VAL A 97 O HIS A 110 SHEET 4 AA1 4 ILE A 52 LYS A 57 -1 N SER A 55 O GLN A 98 SHEET 1 AA2 3 ILE A 34 VAL A 36 0 SHEET 2 AA2 3 MET A 72 LEU A 75 -1 O LEU A 73 N LEU A 35 SHEET 3 AA2 3 VAL A 64 ASP A 67 -1 N LEU A 65 O PHE A 74 SHEET 1 AA3 2 THR A 125 PHE A 126 0 SHEET 2 AA3 2 ALA A 155 THR A 156 -1 O THR A 156 N THR A 125 SHEET 1 AA4 4 TYR A 131 ASN A 136 0 SHEET 2 AA4 4 THR A 225 LEU A 235 1 O THR A 231 N TYR A 131 SHEET 3 AA4 4 ARG A 206 ASP A 215 -1 N VAL A 209 O LEU A 230 SHEET 4 AA4 4 ILE A 166 GLN A 171 -1 N VAL A 169 O GLN A 212 SHEET 1 AA5 3 THR A 144 PHE A 146 0 SHEET 2 AA5 3 VAL A 193 LEU A 195 -1 O VAL A 193 N PHE A 146 SHEET 3 AA5 3 PHE A 183 GLU A 184 -1 N GLU A 184 O VAL A 194 SHEET 1 AA6 2 PRO A 242 LEU A 245 0 SHEET 2 AA6 2 GLN A 284 ASP A 287 -1 O GLN A 284 N LEU A 245 SHEET 1 AA7 2 CYS A 247 LEU A 249 0 SHEET 2 AA7 2 CYS A 256 PRO A 258 -1 O ARG A 257 N VAL A 248 SHEET 1 AA8 4 THR A 260 PRO A 266 0 SHEET 2 AA8 4 ALA A 356 LEU A 365 1 O LEU A 365 N ILE A 265 SHEET 3 AA8 4 LYS A 339 GLN A 348 -1 N ILE A 344 O ALA A 358 SHEET 4 AA8 4 ILE A 301 THR A 309 -1 N THR A 309 O ASP A 341 SHEET 1 AA9 2 PHE A 317 MET A 319 0 SHEET 2 AA9 2 LEU A 326 LEU A 328 -1 O THR A 327 N HIS A 318 SSBOND 1 CYS A 11 CYS A 99 1555 1555 2.00 SSBOND 2 CYS A 247 CYS A 256 1555 1555 1.92 LINK ND2 ASN A 31 C1 NAG A 416 1555 1555 1.48 LINK ND2 ASN A 76 C1 NAG A 417 1555 1555 1.45 LINK OG1 THR A 144 C1 MAN A 411 1555 1555 1.42 LINK ND2 ASN A 180 C1 NAG A 418 1555 1555 1.43 LINK OG1 THR A 225 C1 MAN A 412 1555 1555 1.44 LINK OG1 THR A 227 C1 MAN A 413 1555 1555 1.44 LINK OG1 THR A 229 C1 MAN A 414 1555 1555 1.43 LINK OG1 THR A 231 C1 MAN A 415 1555 1555 1.47 LINK OE1 GLU A 27 CA CA A 401 1555 1555 2.37 LINK OE2 GLU A 27 CA CA A 402 1555 1555 2.37 LINK OE2 GLU A 28 CA CA A 401 1555 1555 2.58 LINK OD1 ASP A 83 CA CA A 401 1555 1555 2.29 LINK OD2 ASP A 85 CA CA A 401 1555 1555 2.34 LINK OD1 ASP A 85 CA CA A 402 1555 1555 2.43 LINK OD2 ASP A 85 CA CA A 402 1555 1555 2.38 LINK OD1 ASP A 118 CA CA A 402 1555 1555 2.36 LINK O ARG A 119 CA CA A 402 1555 1555 2.42 LINK OD1 ASN A 120 CA CA A 403 1555 1555 2.36 LINK OD2 ASP A 121 CA CA A 401 1555 1555 2.25 LINK OD1 ASP A 121 CA CA A 402 1555 1555 2.45 LINK O ASN A 122 CA CA A 403 1555 1555 2.40 LINK OE1 GLU A 137 CA CA A 404 1555 1555 2.32 LINK OD1 ASP A 157 CA CA A 403 1555 1555 2.56 LINK OD2 ASP A 157 CA CA A 403 1555 1555 2.47 LINK OD1 ASP A 159 CA CA A 402 1555 1555 2.41 LINK OD2 ASP A 159 CA CA A 403 1555 1555 2.43 LINK O ASN A 163 CA CA A 403 1555 1555 2.46 LINK OD2 ASP A 215 CA CA A 403 1555 1555 2.47 LINK OD1 ASP A 236 CA CA A 404 1555 1555 2.34 LINK O GLY A 237 CA CA A 404 1555 1555 2.40 LINK OD1 ASP A 238 CA CA A 405 1555 1555 2.37 LINK OD1 ASP A 239 CA CA A 404 1555 1555 2.33 LINK O LEU A 240 CA CA A 405 1555 1555 2.36 LINK OD1 ASP A 287 CA CA A 405 1555 1555 2.58 LINK OD2 ASP A 287 CA CA A 405 1555 1555 2.47 LINK OD1 ASP A 289 CA CA A 404 1555 1555 2.30 LINK OD2 ASP A 289 CA CA A 405 1555 1555 2.36 LINK OE1 GLN A 348 CA CA A 405 1555 1555 2.37 LINK CA CA A 401 O HOH A 848 1555 1555 2.43 LINK CA CA A 404 O HOH A 885 1555 1555 2.38 LINK CA CA A 405 O HOH A 507 1555 1555 2.39 CISPEP 1 PRO A 86 PRO A 87 0 14.67 CISPEP 2 LEU A 245 PRO A 246 0 -5.83 CISPEP 3 ASN A 275 PRO A 276 0 -2.82 CISPEP 4 THR A 280 PRO A 281 0 -14.87 CISPEP 5 GLN A 293 PRO A 294 0 -3.84 CISPEP 6 THR A 309 PRO A 310 0 -3.84 CISPEP 7 THR A 309 PRO A 310 0 -4.47 CRYST1 114.444 114.444 172.011 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008738 0.005045 0.000000 0.00000 SCALE2 0.000000 0.010090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005814 0.00000