HEADER VIRAL PROTEIN/IMMUNE SYSTEM 28-MAR-18 6CVK TITLE HEPATITIS B E-ANTIGEN IN COMPLEX WITH SCFV E13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE CHAIN VARIABLE FRAGMENT (SCFV) E13; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAPSID PROTEIN; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: CORE ANTIGEN,CORE PROTEIN,HBCAG,P21.5; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_TAXID: 9986; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS; SOURCE 8 ORGANISM_COMMON: HBV; SOURCE 9 ORGANISM_TAXID: 10407; SOURCE 10 GENE: C, PREC; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPATITIS B, SINGLE CHAIN VARIABLE FRAGMENT, E-ANTIGEN, VIRAL KEYWDS 2 PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.EREN,A.C.STEVEN,P.T.WINGFIELD REVDAT 4 04-OCT-23 6CVK 1 REMARK REVDAT 3 11-DEC-19 6CVK 1 REMARK REVDAT 2 17-OCT-18 6CVK 1 JRNL REVDAT 1 29-AUG-18 6CVK 0 JRNL AUTH E.EREN,N.R.WATTS,A.D.DEARBORN,I.W.PALMER,J.D.KAUFMAN, JRNL AUTH 2 A.C.STEVEN,P.T.WINGFIELD JRNL TITL STRUCTURES OF HEPATITIS B VIRUS CORE- AND E-ANTIGEN IMMUNE JRNL TITL 2 COMPLEXES SUGGEST MULTI-POINT INHIBITION. JRNL REF STRUCTURE V. 26 1314 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30100358 JRNL DOI 10.1016/J.STR.2018.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 88848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.450 REMARK 3 FREE R VALUE TEST SET COUNT : 3956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7857 - 7.1173 1.00 3033 143 0.1399 0.1596 REMARK 3 2 7.1173 - 5.6935 1.00 3006 140 0.1799 0.2525 REMARK 3 3 5.6935 - 4.9870 1.00 3060 143 0.1594 0.1988 REMARK 3 4 4.9870 - 4.5371 1.00 3041 142 0.1396 0.1897 REMARK 3 5 4.5371 - 4.2152 1.00 3009 139 0.1352 0.1580 REMARK 3 6 4.2152 - 3.9688 1.00 3078 142 0.1455 0.1982 REMARK 3 7 3.9688 - 3.7715 1.00 3035 140 0.1549 0.2180 REMARK 3 8 3.7715 - 3.6083 1.00 2982 140 0.1531 0.2205 REMARK 3 9 3.6083 - 3.4702 1.00 3088 146 0.1460 0.1923 REMARK 3 10 3.4702 - 3.3510 1.00 2992 141 0.1539 0.2094 REMARK 3 11 3.3510 - 3.2467 1.00 3056 142 0.1561 0.2099 REMARK 3 12 3.2467 - 3.1543 1.00 3061 142 0.1626 0.2194 REMARK 3 13 3.1543 - 3.0716 1.00 2941 136 0.1689 0.2103 REMARK 3 14 3.0716 - 2.9969 1.00 3105 146 0.1753 0.2524 REMARK 3 15 2.9969 - 2.9290 1.00 2980 137 0.1847 0.2413 REMARK 3 16 2.9290 - 2.8668 1.00 3096 145 0.1934 0.2408 REMARK 3 17 2.8668 - 2.8097 1.00 3072 143 0.2005 0.2517 REMARK 3 18 2.8097 - 2.7568 1.00 2929 138 0.2123 0.2384 REMARK 3 19 2.7568 - 2.7077 1.00 3041 143 0.2199 0.2705 REMARK 3 20 2.7077 - 2.6619 1.00 3118 146 0.2293 0.2823 REMARK 3 21 2.6619 - 2.6190 1.00 3002 138 0.2494 0.2573 REMARK 3 22 2.6190 - 2.5788 1.00 2975 137 0.2584 0.3374 REMARK 3 23 2.5788 - 2.5410 1.00 3101 143 0.2645 0.2794 REMARK 3 24 2.5410 - 2.5053 1.00 2999 142 0.2756 0.2644 REMARK 3 25 2.5053 - 2.4715 1.00 3015 143 0.2848 0.3725 REMARK 3 26 2.4715 - 2.4394 1.00 3042 140 0.2836 0.3310 REMARK 3 27 2.4394 - 2.4090 1.00 3051 139 0.2890 0.3437 REMARK 3 28 2.4090 - 2.3800 1.00 2984 140 0.2902 0.2852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6052 REMARK 3 ANGLE : 1.312 8275 REMARK 3 CHIRALITY : 0.070 952 REMARK 3 PLANARITY : 0.010 1043 REMARK 3 DIHEDRAL : 13.486 3529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 3 THROUGH 251) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2540 -4.5378 101.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.2373 REMARK 3 T33: 0.2455 T12: -0.0166 REMARK 3 T13: 0.0206 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.0373 L22: 1.1201 REMARK 3 L33: 3.6808 L12: 0.0018 REMARK 3 L13: 0.2647 L23: 0.2868 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0843 S13: 0.1003 REMARK 3 S21: 0.1221 S22: 0.0042 S23: 0.0252 REMARK 3 S31: -0.4004 S32: 0.0275 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 259) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9295 -65.4045 60.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.2304 REMARK 3 T33: 0.2353 T12: 0.0011 REMARK 3 T13: -0.0177 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.9406 L22: 1.3279 REMARK 3 L33: 3.4555 L12: 0.0942 REMARK 3 L13: -0.7544 L23: -0.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.0719 S13: -0.0918 REMARK 3 S21: -0.0335 S22: -0.0322 S23: -0.0156 REMARK 3 S31: 0.2264 S32: -0.0118 S33: 0.0554 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 154) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8928 -52.6954 83.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.2124 REMARK 3 T33: 0.2499 T12: -0.0321 REMARK 3 T13: 0.0344 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.8138 L22: 2.7339 REMARK 3 L33: 3.8516 L12: -0.7618 REMARK 3 L13: 0.8707 L23: -0.3131 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0819 S13: 0.0951 REMARK 3 S21: 0.0526 S22: 0.0355 S23: 0.3476 REMARK 3 S31: -0.1327 S32: -0.2154 S33: -0.0523 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 155) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1580 -16.6773 76.2439 REMARK 3 T TENSOR REMARK 3 T11: 0.3505 T22: 0.2611 REMARK 3 T33: 0.2321 T12: 0.0016 REMARK 3 T13: -0.0277 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.0618 L22: 2.8618 REMARK 3 L33: 3.3699 L12: 0.7382 REMARK 3 L13: -1.2913 L23: -0.3316 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1556 S13: -0.1018 REMARK 3 S21: -0.1244 S22: -0.0701 S23: 0.2731 REMARK 3 S31: -0.0007 S32: -0.1257 S33: 0.0527 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000232659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3V6Z, 2KH2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 550 MME, 0.1 M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 96.07000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 112 REMARK 465 SER B 113 REMARK 465 SER B 114 REMARK 465 ARG B 115 REMARK 465 SER B 116 REMARK 465 SER B 117 REMARK 465 SER B 118 REMARK 465 SER B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 GLN B 129 REMARK 465 PRO B 252 REMARK 465 ARG B 253 REMARK 465 GLY B 254 REMARK 465 SER B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 ALA A 1 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 GLU C 155 REMARK 465 THR C 156 REMARK 465 THR C 157 REMARK 465 VAL C 158 REMARK 465 VAL C 159 REMARK 465 THR D 156 REMARK 465 THR D 157 REMARK 465 VAL D 158 REMARK 465 VAL D 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 2 CG CD CE NZ REMARK 470 LEU C 3 CG CD1 CD2 REMARK 470 MET C 11 CG SD CE REMARK 470 HIS C 57 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 87 CG CD OE1 OE2 REMARK 470 LYS D 2 CG CD CE NZ REMARK 470 LEU D 3 CG CD1 CD2 REMARK 470 MET D 11 CG SD CE REMARK 470 GLU D 56 CG CD OE1 OE2 REMARK 470 GLU D 87 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 331 O HOH A 392 2.05 REMARK 500 O HOH B 365 O HOH B 375 2.13 REMARK 500 O HOH A 306 O HOH A 409 2.16 REMARK 500 O HOH C 224 O HOH C 240 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 259 NE2 HIS D 57 2747 2.05 REMARK 500 CD2 HIS A 259 NE2 HIS D 57 2747 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 255 CB SER A 255 OG 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 90 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 CYS D 4 CA - CB - SG ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 32 -129.98 56.99 REMARK 500 ALA B 53 -36.72 70.82 REMARK 500 ALA B 86 172.19 176.59 REMARK 500 ASP B 237 138.47 -179.35 REMARK 500 SER A 32 -129.40 59.83 REMARK 500 ALA A 53 -35.42 70.61 REMARK 500 ALA A 86 167.83 177.91 REMARK 500 ILE A 176 -60.40 -99.47 REMARK 500 ASP A 237 134.82 -178.81 REMARK 500 PRO A 252 -169.79 -67.16 REMARK 500 MET C 11 14.13 53.79 REMARK 500 PRO C 55 -8.58 -59.20 REMARK 500 LEU D 3 -82.48 -44.53 REMARK 500 CYS D 4 -82.27 9.63 REMARK 500 MET D 11 -165.50 49.57 REMARK 500 ALA D 21 -169.85 -127.15 REMARK 500 THR D 84 -58.75 -124.70 REMARK 500 ASP D 88 133.04 178.56 REMARK 500 PRO D 154 86.72 -68.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CVK B 1 261 PDB 6CVK 6CVK 1 261 DBREF 6CVK A 1 261 PDB 6CVK 6CVK 1 261 DBREF 6CVK C 1 159 UNP Q9QMH8 Q9QMH8_HBV 20 178 DBREF 6CVK D 1 159 UNP Q9QMH8 Q9QMH8_HBV 20 178 SEQADV 6CVK ALA C 58 UNP Q9QMH8 CYS 77 ENGINEERED MUTATION SEQADV 6CVK ASP C 74 UNP Q9QMH8 GLU 93 ENGINEERED MUTATION SEQADV 6CVK VAL C 103 UNP Q9QMH8 MET 122 ENGINEERED MUTATION SEQADV 6CVK ALA C 117 UNP Q9QMH8 CYS 136 ENGINEERED MUTATION SEQADV 6CVK ALA D 58 UNP Q9QMH8 CYS 77 ENGINEERED MUTATION SEQADV 6CVK ASP D 74 UNP Q9QMH8 GLU 93 ENGINEERED MUTATION SEQADV 6CVK VAL D 103 UNP Q9QMH8 MET 122 ENGINEERED MUTATION SEQADV 6CVK ALA D 117 UNP Q9QMH8 CYS 136 ENGINEERED MUTATION SEQRES 1 B 261 ALA ALA GLU LEU VAL LEU THR GLN THR PRO SER SER VAL SEQRES 2 B 261 SER ALA ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN SEQRES 3 B 261 ALA SER GLN SER ILE SER SER ARG LEU GLY TRP TYR GLN SEQRES 4 B 261 GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR GLY SEQRES 5 B 261 ALA SER THR LEU THR SER GLY VAL PRO SER ARG PHE LYS SEQRES 6 B 261 GLY SER GLY SER GLY THR GLU PHE THR LEU THR ILE SER SEQRES 7 B 261 GLY VAL GLN ARG ASP ASP ALA ALA THR TYR TYR CYS LEU SEQRES 8 B 261 GLY SER ASP THR SER THR ASP THR ALA PHE GLY GLY GLY SEQRES 9 B 261 THR GLU VAL VAL VAL LYS GLY GLY SER SER ARG SER SER SEQRES 10 B 261 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLN GLU SEQRES 11 B 261 GLN LEU VAL GLU SER GLY GLY ARG LEU VAL PRO PRO GLY SEQRES 12 B 261 GLY SER LEU THR LEU THR CYS THR VAL SER GLY ILE ASP SEQRES 13 B 261 LEU SER SER ASN ALA ILE SER TRP VAL ARG GLN ALA PRO SEQRES 14 B 261 GLY LYS GLY LEU GLU TYR ILE GLY ILE ILE TYR GLY GLY SEQRES 15 B 261 SER ILE PRO TYR TYR SER ARG TRP ALA LYS GLY ARG PHE SEQRES 16 B 261 THR ILE SER LYS THR SER THR THR VAL ALA LEU LYS MET SEQRES 17 B 261 SER THR LEU THR ALA SER ASP THR ALA THR TYR PHE CYS SEQRES 18 B 261 ALA ARG GLY LYS SER ASP GLY ASP GLY TYR ALA ALA TYR SEQRES 19 B 261 ARG LEU ASP PRO TRP GLY LEU GLY THR LEU VAL THR ILE SEQRES 20 B 261 SER SER LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS SEQRES 21 B 261 HIS SEQRES 1 A 261 ALA ALA GLU LEU VAL LEU THR GLN THR PRO SER SER VAL SEQRES 2 A 261 SER ALA ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN SEQRES 3 A 261 ALA SER GLN SER ILE SER SER ARG LEU GLY TRP TYR GLN SEQRES 4 A 261 GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR GLY SEQRES 5 A 261 ALA SER THR LEU THR SER GLY VAL PRO SER ARG PHE LYS SEQRES 6 A 261 GLY SER GLY SER GLY THR GLU PHE THR LEU THR ILE SER SEQRES 7 A 261 GLY VAL GLN ARG ASP ASP ALA ALA THR TYR TYR CYS LEU SEQRES 8 A 261 GLY SER ASP THR SER THR ASP THR ALA PHE GLY GLY GLY SEQRES 9 A 261 THR GLU VAL VAL VAL LYS GLY GLY SER SER ARG SER SER SEQRES 10 A 261 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLN GLU SEQRES 11 A 261 GLN LEU VAL GLU SER GLY GLY ARG LEU VAL PRO PRO GLY SEQRES 12 A 261 GLY SER LEU THR LEU THR CYS THR VAL SER GLY ILE ASP SEQRES 13 A 261 LEU SER SER ASN ALA ILE SER TRP VAL ARG GLN ALA PRO SEQRES 14 A 261 GLY LYS GLY LEU GLU TYR ILE GLY ILE ILE TYR GLY GLY SEQRES 15 A 261 SER ILE PRO TYR TYR SER ARG TRP ALA LYS GLY ARG PHE SEQRES 16 A 261 THR ILE SER LYS THR SER THR THR VAL ALA LEU LYS MET SEQRES 17 A 261 SER THR LEU THR ALA SER ASP THR ALA THR TYR PHE CYS SEQRES 18 A 261 ALA ARG GLY LYS SER ASP GLY ASP GLY TYR ALA ALA TYR SEQRES 19 A 261 ARG LEU ASP PRO TRP GLY LEU GLY THR LEU VAL THR ILE SEQRES 20 A 261 SER SER LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS SEQRES 1 C 159 SER LYS LEU CYS LEU GLY TRP LEU TRP GLY MET ASP ILE SEQRES 2 C 159 ASP PRO TYR LYS GLU PHE GLY ALA THR VAL GLU LEU LEU SEQRES 3 C 159 SER PHE LEU PRO SER ASP PHE PHE PRO SER VAL ARG ASP SEQRES 4 C 159 LEU LEU ASP THR ALA ALA ALA LEU TYR ARG ASP ALA LEU SEQRES 5 C 159 GLU SER PRO GLU HIS ALA SER PRO HIS HIS THR ALA LEU SEQRES 6 C 159 ARG GLN ALA ILE LEU CYS TRP GLY ASP LEU MET THR LEU SEQRES 7 C 159 ALA THR TRP VAL GLY THR ASN LEU GLU ASP PRO ALA SER SEQRES 8 C 159 ARG ASP LEU VAL VAL SER TYR VAL ASN THR ASN VAL GLY SEQRES 9 C 159 LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS ILE SER ALA SEQRES 10 C 159 LEU THR PHE GLY ARG GLU THR VAL LEU GLU TYR LEU VAL SEQRES 11 C 159 SER PHE GLY VAL TRP ILE ARG THR PRO PRO ALA TYR ARG SEQRES 12 C 159 PRO PRO ASN ALA PRO ILE LEU SER THR LEU PRO GLU THR SEQRES 13 C 159 THR VAL VAL SEQRES 1 D 159 SER LYS LEU CYS LEU GLY TRP LEU TRP GLY MET ASP ILE SEQRES 2 D 159 ASP PRO TYR LYS GLU PHE GLY ALA THR VAL GLU LEU LEU SEQRES 3 D 159 SER PHE LEU PRO SER ASP PHE PHE PRO SER VAL ARG ASP SEQRES 4 D 159 LEU LEU ASP THR ALA ALA ALA LEU TYR ARG ASP ALA LEU SEQRES 5 D 159 GLU SER PRO GLU HIS ALA SER PRO HIS HIS THR ALA LEU SEQRES 6 D 159 ARG GLN ALA ILE LEU CYS TRP GLY ASP LEU MET THR LEU SEQRES 7 D 159 ALA THR TRP VAL GLY THR ASN LEU GLU ASP PRO ALA SER SEQRES 8 D 159 ARG ASP LEU VAL VAL SER TYR VAL ASN THR ASN VAL GLY SEQRES 9 D 159 LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS ILE SER ALA SEQRES 10 D 159 LEU THR PHE GLY ARG GLU THR VAL LEU GLU TYR LEU VAL SEQRES 11 D 159 SER PHE GLY VAL TRP ILE ARG THR PRO PRO ALA TYR ARG SEQRES 12 D 159 PRO PRO ASN ALA PRO ILE LEU SER THR LEU PRO GLU THR SEQRES 13 D 159 THR VAL VAL FORMUL 5 HOH *266(H2 O) HELIX 1 AA1 GLN B 81 ALA B 85 5 5 HELIX 2 AA2 THR B 212 THR B 216 5 5 HELIX 3 AA3 GLN A 81 ALA A 85 5 5 HELIX 4 AA4 THR A 212 THR A 216 5 5 HELIX 5 AA5 LYS C 2 GLY C 10 1 9 HELIX 6 AA6 TYR C 16 GLY C 20 5 5 HELIX 7 AA7 THR C 22 PHE C 28 1 7 HELIX 8 AA8 LEU C 29 PHE C 34 5 6 HELIX 9 AA9 SER C 36 SER C 54 1 19 HELIX 10 AB1 PRO C 55 ALA C 58 5 4 HELIX 11 AB2 SER C 59 ASN C 85 1 27 HELIX 12 AB3 ASP C 88 GLY C 121 1 34 HELIX 13 AB4 GLY C 121 THR C 138 1 18 HELIX 14 AB5 PRO C 139 ARG C 143 5 5 HELIX 15 AB6 LYS D 2 TRP D 9 1 8 HELIX 16 AB7 TYR D 16 GLY D 20 5 5 HELIX 17 AB8 THR D 22 PHE D 28 1 7 HELIX 18 AB9 LEU D 29 PHE D 34 5 6 HELIX 19 AC1 SER D 36 SER D 54 1 19 HELIX 20 AC2 SER D 59 LEU D 86 1 28 HELIX 21 AC3 ASP D 88 GLY D 121 1 34 HELIX 22 AC4 GLY D 121 THR D 138 1 18 HELIX 23 AC5 PRO D 139 ARG D 143 5 5 SHEET 1 AA1 4 LEU B 6 THR B 9 0 SHEET 2 AA1 4 VAL B 21 ALA B 27 -1 O ASN B 24 N THR B 9 SHEET 3 AA1 4 GLU B 72 ILE B 77 -1 O LEU B 75 N ILE B 23 SHEET 4 AA1 4 PHE B 64 SER B 69 -1 N SER B 67 O THR B 74 SHEET 1 AA2 6 SER B 12 ALA B 16 0 SHEET 2 AA2 6 THR B 105 LYS B 110 1 O VAL B 108 N VAL B 13 SHEET 3 AA2 6 ALA B 86 SER B 93 -1 N ALA B 86 O VAL B 107 SHEET 4 AA2 6 LEU B 35 GLN B 40 -1 N GLN B 40 O THR B 87 SHEET 5 AA2 6 LYS B 47 TYR B 51 -1 O LEU B 49 N TRP B 37 SHEET 6 AA2 6 THR B 55 LEU B 56 -1 O THR B 55 N TYR B 51 SHEET 1 AA3 4 SER B 12 ALA B 16 0 SHEET 2 AA3 4 THR B 105 LYS B 110 1 O VAL B 108 N VAL B 13 SHEET 3 AA3 4 ALA B 86 SER B 93 -1 N ALA B 86 O VAL B 107 SHEET 4 AA3 4 THR B 99 PHE B 101 -1 O ALA B 100 N GLY B 92 SHEET 1 AA4 4 GLN B 131 SER B 135 0 SHEET 2 AA4 4 LEU B 146 SER B 153 -1 O THR B 149 N SER B 135 SHEET 3 AA4 4 THR B 203 MET B 208 -1 O LEU B 206 N LEU B 148 SHEET 4 AA4 4 PHE B 195 LYS B 199 -1 N THR B 196 O LYS B 207 SHEET 1 AA5 6 LEU B 139 VAL B 140 0 SHEET 2 AA5 6 THR B 243 ILE B 247 1 O THR B 246 N VAL B 140 SHEET 3 AA5 6 ALA B 217 GLY B 224 -1 N ALA B 217 O VAL B 245 SHEET 4 AA5 6 ALA B 161 GLN B 167 -1 N VAL B 165 O PHE B 220 SHEET 5 AA5 6 LEU B 173 ILE B 179 -1 O GLU B 174 N ARG B 166 SHEET 6 AA5 6 PRO B 185 TYR B 187 -1 O TYR B 186 N ILE B 178 SHEET 1 AA6 4 LEU B 139 VAL B 140 0 SHEET 2 AA6 4 THR B 243 ILE B 247 1 O THR B 246 N VAL B 140 SHEET 3 AA6 4 ALA B 217 GLY B 224 -1 N ALA B 217 O VAL B 245 SHEET 4 AA6 4 LEU B 236 TRP B 239 -1 O ASP B 237 N ARG B 223 SHEET 1 AA7 4 LEU A 6 THR A 9 0 SHEET 2 AA7 4 VAL A 21 ALA A 27 -1 O GLN A 26 N THR A 7 SHEET 3 AA7 4 GLU A 72 ILE A 77 -1 O LEU A 75 N ILE A 23 SHEET 4 AA7 4 PHE A 64 SER A 69 -1 N LYS A 65 O THR A 76 SHEET 1 AA8 6 SER A 12 ALA A 16 0 SHEET 2 AA8 6 THR A 105 LYS A 110 1 O VAL A 108 N VAL A 13 SHEET 3 AA8 6 ALA A 86 SER A 93 -1 N ALA A 86 O VAL A 107 SHEET 4 AA8 6 LEU A 35 GLN A 40 -1 N GLN A 40 O THR A 87 SHEET 5 AA8 6 LYS A 47 TYR A 51 -1 O LEU A 49 N TRP A 37 SHEET 6 AA8 6 THR A 55 LEU A 56 -1 O THR A 55 N TYR A 51 SHEET 1 AA9 4 SER A 12 ALA A 16 0 SHEET 2 AA9 4 THR A 105 LYS A 110 1 O VAL A 108 N VAL A 13 SHEET 3 AA9 4 ALA A 86 SER A 93 -1 N ALA A 86 O VAL A 107 SHEET 4 AA9 4 THR A 99 PHE A 101 -1 O ALA A 100 N GLY A 92 SHEET 1 AB1 4 GLN A 131 SER A 135 0 SHEET 2 AB1 4 LEU A 146 SER A 153 -1 O SER A 153 N GLN A 131 SHEET 3 AB1 4 THR A 203 MET A 208 -1 O VAL A 204 N CYS A 150 SHEET 4 AB1 4 PHE A 195 LYS A 199 -1 N THR A 196 O LYS A 207 SHEET 1 AB2 6 LEU A 139 VAL A 140 0 SHEET 2 AB2 6 THR A 243 ILE A 247 1 O THR A 246 N VAL A 140 SHEET 3 AB2 6 ALA A 217 GLY A 224 -1 N ALA A 217 O VAL A 245 SHEET 4 AB2 6 ALA A 161 GLN A 167 -1 N VAL A 165 O PHE A 220 SHEET 5 AB2 6 LEU A 173 ILE A 179 -1 O GLY A 177 N TRP A 164 SHEET 6 AB2 6 PRO A 185 TYR A 187 -1 O TYR A 186 N ILE A 178 SHEET 1 AB3 4 LEU A 139 VAL A 140 0 SHEET 2 AB3 4 THR A 243 ILE A 247 1 O THR A 246 N VAL A 140 SHEET 3 AB3 4 ALA A 217 GLY A 224 -1 N ALA A 217 O VAL A 245 SHEET 4 AB3 4 LEU A 236 TRP A 239 -1 O PRO A 238 N ARG A 223 SSBOND 1 CYS B 25 CYS B 90 1555 1555 2.78 SSBOND 2 CYS B 150 CYS B 221 1555 1555 2.17 SSBOND 3 CYS A 25 CYS A 90 1555 1555 2.10 SSBOND 4 CYS A 150 CYS A 221 1555 1555 2.12 SSBOND 5 CYS C 4 CYS C 71 1555 1555 2.05 SSBOND 6 CYS D 4 CYS D 71 1555 1555 2.06 CISPEP 1 THR B 9 PRO B 10 0 -6.44 CISPEP 2 ASP B 237 PRO B 238 0 -9.36 CISPEP 3 THR A 9 PRO A 10 0 -3.97 CISPEP 4 ASP A 237 PRO A 238 0 -9.25 CRYST1 46.490 192.140 64.980 90.00 98.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021510 0.000000 0.003376 0.00000 SCALE2 0.000000 0.005205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015578 0.00000