HEADER SUGAR BINDING PROTEIN 30-MAR-18 6CWH TITLE CRYSTAL STRUCTURE OF SPAA-SLH IN COMPLEX WITH 4,6-PYR-BETA-D-MANNACOME TITLE 2 (P1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE (S-) LAYER GLYCOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SLH DOMAINS (UNP RESIDUES 21-193); COMPND 5 SYNONYM: SPAA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS ALVEI; SOURCE 3 ORGANISM_COMMON: BACILLUS ALVEI; SOURCE 4 ORGANISM_TAXID: 44250; SOURCE 5 GENE: SPAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS SURFACE LAYER HOMOLOGY DOMAIN, SECONDARY CELL WALL POLYMER, S-LAYER, KEYWDS 2 SLH, SCWP, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.J.BLACKLER,S.V.EVANS REVDAT 4 04-OCT-23 6CWH 1 REMARK REVDAT 3 08-JAN-20 6CWH 1 REMARK REVDAT 2 22-AUG-18 6CWH 1 JRNL REVDAT 1 15-AUG-18 6CWH 0 JRNL AUTH R.J.BLACKLER,A.LOPEZ-GUZMAN,F.F.HAGER,B.JANESCH,G.MARTINZ, JRNL AUTH 2 S.M.L.GAGNON,O.HAJI-GHASSEMI,P.KOSMA,P.MESSNER,C.SCHAFFER, JRNL AUTH 3 S.V.EVANS JRNL TITL STRUCTURAL BASIS OF CELL WALL ANCHORING BY SLH DOMAINS IN JRNL TITL 2 PAENIBACILLUS ALVEI. JRNL REF NAT COMMUN V. 9 3120 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30087354 JRNL DOI 10.1038/S41467-018-05471-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.4 REMARK 3 NUMBER OF REFLECTIONS : 39929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.464 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5279 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5074 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7123 ; 1.605 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11740 ; 1.227 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 661 ; 5.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;32.626 ;26.123 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 935 ;15.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 790 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5948 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1128 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2644 ; 1.328 ; 1.651 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2643 ; 1.327 ; 1.650 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3302 ; 2.142 ; 2.463 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 172 B 8 172 10052 0.070 0.050 REMARK 3 2 A 9 171 C 9 171 9759 0.080 0.050 REMARK 3 3 A 8 172 D 8 172 9915 0.080 0.050 REMARK 3 4 B 9 171 C 9 171 9705 0.070 0.050 REMARK 3 5 B 8 172 D 8 172 9860 0.070 0.050 REMARK 3 6 C 9 171 D 9 171 9914 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5948 -42.7914 25.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0795 REMARK 3 T33: 0.0955 T12: -0.0632 REMARK 3 T13: 0.0384 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.3211 L22: 1.5626 REMARK 3 L33: 4.2629 L12: -0.1403 REMARK 3 L13: 0.5501 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.2856 S12: -0.2925 S13: -0.0730 REMARK 3 S21: 0.0432 S22: -0.0622 S23: 0.0789 REMARK 3 S31: -0.0736 S32: -0.2988 S33: -0.2234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5890 -68.4517 -8.5772 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.0602 REMARK 3 T33: 0.0950 T12: 0.0478 REMARK 3 T13: -0.0393 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4446 L22: 1.5600 REMARK 3 L33: 4.4322 L12: 0.2555 REMARK 3 L13: -0.4905 L23: -0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.2756 S12: 0.2548 S13: 0.0600 REMARK 3 S21: -0.0402 S22: -0.0625 S23: 0.0782 REMARK 3 S31: 0.1122 S32: -0.2619 S33: -0.2132 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 29 C 192 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3686 -34.7382 -9.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.0585 REMARK 3 T33: 0.0497 T12: -0.0909 REMARK 3 T13: 0.0252 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.8228 L22: 1.3800 REMARK 3 L33: 3.2587 L12: -0.0185 REMARK 3 L13: -1.8750 L23: -0.3257 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: 0.1626 S13: 0.2283 REMARK 3 S21: -0.2327 S22: 0.0844 S23: 0.0854 REMARK 3 S31: -0.4823 S32: 0.1403 S33: -0.1774 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 28 D 192 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5368 -76.5380 26.3458 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.0474 REMARK 3 T33: 0.0579 T12: 0.0736 REMARK 3 T13: -0.0349 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.8199 L22: 1.3016 REMARK 3 L33: 3.4798 L12: 0.1585 REMARK 3 L13: 1.9063 L23: -0.2237 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: -0.1780 S13: -0.2284 REMARK 3 S21: 0.2351 S22: 0.0755 S23: 0.0574 REMARK 3 S31: 0.5110 S32: 0.0896 S33: -0.1949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6CWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6CWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE, PH 7.0, 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 GLY B 24 REMARK 465 ALA B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 VAL C 21 REMARK 465 ALA C 22 REMARK 465 PHE C 23 REMARK 465 GLY C 24 REMARK 465 ALA C 25 REMARK 465 ASP C 26 REMARK 465 ALA C 27 REMARK 465 ALA C 28 REMARK 465 GLY C 193 REMARK 465 SER C 194 REMARK 465 GLY C 195 REMARK 465 SER C 196 REMARK 465 HIS C 197 REMARK 465 HIS C 198 REMARK 465 HIS C 199 REMARK 465 HIS C 200 REMARK 465 HIS C 201 REMARK 465 HIS C 202 REMARK 465 VAL D 21 REMARK 465 ALA D 22 REMARK 465 PHE D 23 REMARK 465 GLY D 24 REMARK 465 ALA D 25 REMARK 465 ASP D 26 REMARK 465 ALA D 27 REMARK 465 GLY D 193 REMARK 465 SER D 194 REMARK 465 GLY D 195 REMARK 465 SER D 196 REMARK 465 HIS D 197 REMARK 465 HIS D 198 REMARK 465 HIS D 199 REMARK 465 HIS D 200 REMARK 465 HIS D 201 REMARK 465 HIS D 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 63 O HOH D 301 2.13 REMARK 500 O HOH A 368 O HOH A 384 2.14 REMARK 500 O ASP D 36 O HOH D 302 2.17 REMARK 500 OG1 THR C 30 O HOH C 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -169.55 -171.65 REMARK 500 ASP A 118 80.21 56.01 REMARK 500 ASP B 89 -170.95 -172.99 REMARK 500 ASP B 118 79.59 57.09 REMARK 500 ASP C 89 -166.70 -173.07 REMARK 500 ASP C 118 78.52 57.45 REMARK 500 ASN C 146 -178.75 -171.46 REMARK 500 ASP D 89 -168.70 -171.04 REMARK 500 ASP D 118 78.74 58.35 REMARK 500 ASN D 146 -179.06 -171.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LA D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CWC RELATED DB: PDB REMARK 900 RELATED ID: 6CWF RELATED DB: PDB REMARK 900 RELATED ID: 6CWI RELATED DB: PDB REMARK 900 RELATED ID: 6CWL RELATED DB: PDB REMARK 900 RELATED ID: 6CWM RELATED DB: PDB REMARK 900 RELATED ID: 6CWN RELATED DB: PDB REMARK 900 RELATED ID: 6CWR RELATED DB: PDB DBREF 6CWH A 21 193 UNP C1JZ07 C1JZ07_PAEAL 21 193 DBREF 6CWH B 21 193 UNP C1JZ07 C1JZ07_PAEAL 21 193 DBREF 6CWH C 21 193 UNP C1JZ07 C1JZ07_PAEAL 21 193 DBREF 6CWH D 21 193 UNP C1JZ07 C1JZ07_PAEAL 21 193 SEQADV 6CWH SER A 194 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH GLY A 195 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER A 196 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 197 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 198 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 199 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 200 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 201 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS A 202 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER B 194 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH GLY B 195 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER B 196 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 197 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 198 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 199 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 200 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 201 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS B 202 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER C 194 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH GLY C 195 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER C 196 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 197 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 198 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 199 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 200 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 201 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS C 202 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER D 194 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH GLY D 195 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH SER D 196 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 197 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 198 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 199 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 200 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 201 UNP C1JZ07 EXPRESSION TAG SEQADV 6CWH HIS D 202 UNP C1JZ07 EXPRESSION TAG SEQRES 1 A 182 VAL ALA PHE GLY ALA ASP ALA ALA LYS THR THR GLN GLU SEQRES 2 A 182 LYS PHE ASP ALA LEU LYS GLU ALA GLY VAL PHE SER GLY SEQRES 3 A 182 TYR PRO GLY THR THR ASP ALA LYS LEU GLY GLN ASP MET SEQRES 4 A 182 THR ARG ALA GLU PHE ALA LYS VAL LEU VAL LYS LEU PHE SEQRES 5 A 182 GLY LEU LYS GLU ILE HIS GLY GLN TYR SER TYR LYS ASP SEQRES 6 A 182 LYS ASN TYR ASP ALA LYS ASN TRP ALA ALA PRO PHE ILE SEQRES 7 A 182 GLU ALA VAL THR ALA GLU GLY LEU MET GLN GLY LYS ASP SEQRES 8 A 182 LEU THR LYS LYS ILE PHE ASP PHE ASN GLY LYS ILE THR SEQRES 9 A 182 VAL GLU GLU ALA SER LYS THR LEU VAL THR ALA LEU LYS SEQRES 10 A 182 LEU GLU PRO VAL LYS ASP ALA GLN ASN LYS ALA THR ASP SEQRES 11 A 182 TRP ALA LYS GLY TYR PHE GLU ALA ALA VAL ASN ALA GLY SEQRES 12 A 182 LEU PHE SER LYS ASP ALA ASN PRO LYS ALA ASN ALA THR SEQRES 13 A 182 ARG ALA GLN LEU VAL GLU ALA ALA PHE ALA ALA ASP GLU SEQRES 14 A 182 MET SER LYS GLY SER GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 182 VAL ALA PHE GLY ALA ASP ALA ALA LYS THR THR GLN GLU SEQRES 2 B 182 LYS PHE ASP ALA LEU LYS GLU ALA GLY VAL PHE SER GLY SEQRES 3 B 182 TYR PRO GLY THR THR ASP ALA LYS LEU GLY GLN ASP MET SEQRES 4 B 182 THR ARG ALA GLU PHE ALA LYS VAL LEU VAL LYS LEU PHE SEQRES 5 B 182 GLY LEU LYS GLU ILE HIS GLY GLN TYR SER TYR LYS ASP SEQRES 6 B 182 LYS ASN TYR ASP ALA LYS ASN TRP ALA ALA PRO PHE ILE SEQRES 7 B 182 GLU ALA VAL THR ALA GLU GLY LEU MET GLN GLY LYS ASP SEQRES 8 B 182 LEU THR LYS LYS ILE PHE ASP PHE ASN GLY LYS ILE THR SEQRES 9 B 182 VAL GLU GLU ALA SER LYS THR LEU VAL THR ALA LEU LYS SEQRES 10 B 182 LEU GLU PRO VAL LYS ASP ALA GLN ASN LYS ALA THR ASP SEQRES 11 B 182 TRP ALA LYS GLY TYR PHE GLU ALA ALA VAL ASN ALA GLY SEQRES 12 B 182 LEU PHE SER LYS ASP ALA ASN PRO LYS ALA ASN ALA THR SEQRES 13 B 182 ARG ALA GLN LEU VAL GLU ALA ALA PHE ALA ALA ASP GLU SEQRES 14 B 182 MET SER LYS GLY SER GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 182 VAL ALA PHE GLY ALA ASP ALA ALA LYS THR THR GLN GLU SEQRES 2 C 182 LYS PHE ASP ALA LEU LYS GLU ALA GLY VAL PHE SER GLY SEQRES 3 C 182 TYR PRO GLY THR THR ASP ALA LYS LEU GLY GLN ASP MET SEQRES 4 C 182 THR ARG ALA GLU PHE ALA LYS VAL LEU VAL LYS LEU PHE SEQRES 5 C 182 GLY LEU LYS GLU ILE HIS GLY GLN TYR SER TYR LYS ASP SEQRES 6 C 182 LYS ASN TYR ASP ALA LYS ASN TRP ALA ALA PRO PHE ILE SEQRES 7 C 182 GLU ALA VAL THR ALA GLU GLY LEU MET GLN GLY LYS ASP SEQRES 8 C 182 LEU THR LYS LYS ILE PHE ASP PHE ASN GLY LYS ILE THR SEQRES 9 C 182 VAL GLU GLU ALA SER LYS THR LEU VAL THR ALA LEU LYS SEQRES 10 C 182 LEU GLU PRO VAL LYS ASP ALA GLN ASN LYS ALA THR ASP SEQRES 11 C 182 TRP ALA LYS GLY TYR PHE GLU ALA ALA VAL ASN ALA GLY SEQRES 12 C 182 LEU PHE SER LYS ASP ALA ASN PRO LYS ALA ASN ALA THR SEQRES 13 C 182 ARG ALA GLN LEU VAL GLU ALA ALA PHE ALA ALA ASP GLU SEQRES 14 C 182 MET SER LYS GLY SER GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 182 VAL ALA PHE GLY ALA ASP ALA ALA LYS THR THR GLN GLU SEQRES 2 D 182 LYS PHE ASP ALA LEU LYS GLU ALA GLY VAL PHE SER GLY SEQRES 3 D 182 TYR PRO GLY THR THR ASP ALA LYS LEU GLY GLN ASP MET SEQRES 4 D 182 THR ARG ALA GLU PHE ALA LYS VAL LEU VAL LYS LEU PHE SEQRES 5 D 182 GLY LEU LYS GLU ILE HIS GLY GLN TYR SER TYR LYS ASP SEQRES 6 D 182 LYS ASN TYR ASP ALA LYS ASN TRP ALA ALA PRO PHE ILE SEQRES 7 D 182 GLU ALA VAL THR ALA GLU GLY LEU MET GLN GLY LYS ASP SEQRES 8 D 182 LEU THR LYS LYS ILE PHE ASP PHE ASN GLY LYS ILE THR SEQRES 9 D 182 VAL GLU GLU ALA SER LYS THR LEU VAL THR ALA LEU LYS SEQRES 10 D 182 LEU GLU PRO VAL LYS ASP ALA GLN ASN LYS ALA THR ASP SEQRES 11 D 182 TRP ALA LYS GLY TYR PHE GLU ALA ALA VAL ASN ALA GLY SEQRES 12 D 182 LEU PHE SER LYS ASP ALA ASN PRO LYS ALA ASN ALA THR SEQRES 13 D 182 ARG ALA GLN LEU VAL GLU ALA ALA PHE ALA ALA ASP GLU SEQRES 14 D 182 MET SER LYS GLY SER GLY SER HIS HIS HIS HIS HIS HIS HET 6LA A 201 21 HET 6LA B 201 21 HET 6LA C 201 21 HET 6LA D 201 21 HETNAM 6LA METHYL 2-(ACETYLAMINO)-4,6-O-[(1S)-1- HETNAM 2 6LA CARBOXYETHYLIDENE]-2-DEOXY-BETA-D-MANNOPYRANOSIDE FORMUL 5 6LA 4(C12 H19 N O8) FORMUL 9 HOH *350(H2 O) HELIX 1 AA1 THR A 30 ALA A 41 1 12 HELIX 2 AA2 THR A 60 GLY A 73 1 14 HELIX 3 AA3 ALA A 94 GLU A 104 1 11 HELIX 4 AA4 THR A 124 LEU A 136 1 13 HELIX 5 AA5 THR A 149 TRP A 151 5 3 HELIX 6 AA6 ALA A 152 ALA A 162 1 11 HELIX 7 AA7 THR A 176 LYS A 192 1 17 HELIX 8 AA8 THR B 30 ALA B 41 1 12 HELIX 9 AA9 THR B 60 GLY B 73 1 14 HELIX 10 AB1 ALA B 94 GLU B 104 1 11 HELIX 11 AB2 THR B 124 LEU B 136 1 13 HELIX 12 AB3 THR B 149 TRP B 151 5 3 HELIX 13 AB4 ALA B 152 ALA B 162 1 11 HELIX 14 AB5 THR B 176 LYS B 192 1 17 HELIX 15 AB6 THR C 30 ALA C 41 1 12 HELIX 16 AB7 THR C 60 GLY C 73 1 14 HELIX 17 AB8 ALA C 94 GLU C 104 1 11 HELIX 18 AB9 THR C 124 LEU C 136 1 13 HELIX 19 AC1 THR C 149 TRP C 151 5 3 HELIX 20 AC2 ALA C 152 ALA C 162 1 11 HELIX 21 AC3 THR C 176 LYS C 192 1 17 HELIX 22 AC4 THR D 30 ALA D 41 1 12 HELIX 23 AC5 THR D 60 GLY D 73 1 14 HELIX 24 AC6 ALA D 94 GLU D 104 1 11 HELIX 25 AC7 THR D 124 LEU D 136 1 13 HELIX 26 AC8 THR D 149 TRP D 151 5 3 HELIX 27 AC9 ALA D 152 ALA D 162 1 11 HELIX 28 AD1 THR D 176 LYS D 192 1 17 SITE 1 AC1 9 ARG A 61 MET A 107 GLN A 108 GLY A 109 SITE 2 AC1 9 LYS A 110 GLU A 127 LYS A 130 TRP A 151 SITE 3 AC1 9 HOH A 305 SITE 1 AC2 8 ARG B 61 MET B 107 GLN B 108 GLY B 109 SITE 2 AC2 8 LYS B 110 GLU B 127 LYS B 130 HOH B 302 SITE 1 AC3 8 ARG C 61 MET C 107 GLN C 108 GLY C 109 SITE 2 AC3 8 LYS C 110 GLU C 127 LYS C 130 HOH C 312 SITE 1 AC4 9 ARG D 61 MET D 107 GLN D 108 GLY D 109 SITE 2 AC4 9 LYS D 110 GLU D 127 LYS D 130 TRP D 151 SITE 3 AC4 9 HOH D 310 CRYST1 46.215 72.239 72.305 86.73 71.29 71.40 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021638 -0.007284 -0.007703 0.00000 SCALE2 0.000000 0.014606 0.000738 0.00000 SCALE3 0.000000 0.000000 0.014620 0.00000