HEADER IMMUNE SYSTEM 30-MAR-18 6CWK TITLE ANTI-RTA VHH ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-RICIN ANTIBODY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_TAXID: 30538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RICIN BINDING ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,N.MANTIS REVDAT 2 18-DEC-19 6CWK 1 REMARK REVDAT 1 16-JAN-19 6CWK 0 JRNL AUTH M.J.RUDOLPH,D.J.VANCE,S.KELOW,S.K.ANGALAKURTHI,S.NGUYEN, JRNL AUTH 2 S.A.DAVIS,Y.RONG,C.R.MIDDAUGH,D.D.WEIS,R.DUNBRACK JR., JRNL AUTH 3 J.KARANICOLAS,N.J.MANTIS JRNL TITL CONTRIBUTION OF AN UNUSUAL CDR2 ELEMENT OF A SINGLE DOMAIN JRNL TITL 2 ANTIBODY IN RICIN TOXIN BINDING AFFINITY AND NEUTRALIZING JRNL TITL 3 ACTIVITY. JRNL REF PROTEIN ENG. DES. SEL. V. 31 277 2018 JRNL REFN ESSN 1741-0134 JRNL PMID 30265352 JRNL DOI 10.1093/PROTEIN/GZY022 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7835 - 3.0961 0.97 2779 151 0.1393 0.1707 REMARK 3 2 3.0961 - 2.4576 1.00 2709 144 0.1432 0.1696 REMARK 3 3 2.4576 - 2.1470 1.00 2672 137 0.1374 0.1598 REMARK 3 4 2.1470 - 1.9507 1.00 2643 144 0.1417 0.1454 REMARK 3 5 1.9507 - 1.8109 1.00 2634 147 0.1548 0.1613 REMARK 3 6 1.8109 - 1.7041 1.00 2640 128 0.1650 0.1731 REMARK 3 7 1.7041 - 1.6187 1.00 2641 123 0.1722 0.1931 REMARK 3 8 1.6187 - 1.5483 1.00 2602 130 0.1697 0.1859 REMARK 3 9 1.5483 - 1.4887 1.00 2619 129 0.1877 0.2227 REMARK 3 10 1.4887 - 1.4373 1.00 2587 146 0.1971 0.2249 REMARK 3 11 1.4373 - 1.3924 1.00 2602 142 0.1947 0.2165 REMARK 3 12 1.3924 - 1.3526 1.00 2593 145 0.2071 0.2150 REMARK 3 13 1.3526 - 1.3169 1.00 2593 133 0.2188 0.2237 REMARK 3 14 1.3169 - 1.2848 1.00 2594 127 0.2304 0.2273 REMARK 3 15 1.2848 - 1.2556 0.94 2458 108 0.2594 0.2588 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 1179 REMARK 3 ANGLE : 1.862 1613 REMARK 3 CHIRALITY : 0.113 164 REMARK 3 PLANARITY : 0.013 214 REMARK 3 DIHEDRAL : 16.286 440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8649 10.0712 21.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.2268 REMARK 3 T33: 0.2273 T12: -0.0181 REMARK 3 T13: 0.0036 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 9.4376 L22: 4.9928 REMARK 3 L33: 6.9907 L12: -6.8132 REMARK 3 L13: 4.9033 L23: -4.9007 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: -0.6084 S13: -0.5078 REMARK 3 S21: 0.1965 S22: 0.2827 S23: 0.3616 REMARK 3 S31: 0.1789 S32: -0.0802 S33: -0.2659 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7337 23.6435 16.9603 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.1974 REMARK 3 T33: 0.1659 T12: 0.0586 REMARK 3 T13: -0.0017 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.8177 L22: 8.1277 REMARK 3 L33: 3.6766 L12: 1.2969 REMARK 3 L13: 0.4897 L23: -1.6288 REMARK 3 S TENSOR REMARK 3 S11: -0.2167 S12: -0.2651 S13: 0.5408 REMARK 3 S21: 0.2062 S22: -0.0083 S23: -0.1002 REMARK 3 S31: -0.3972 S32: -0.3513 S33: 0.2170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2239 11.1881 22.6168 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.0976 REMARK 3 T33: 0.1160 T12: -0.0171 REMARK 3 T13: -0.0149 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 4.4521 L22: 1.4572 REMARK 3 L33: 5.6510 L12: -1.1485 REMARK 3 L13: 3.2665 L23: -0.8188 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -0.3715 S13: -0.3062 REMARK 3 S21: 0.1134 S22: 0.1323 S23: 0.0202 REMARK 3 S31: 0.3064 S32: -0.1938 S33: -0.1739 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2086 15.8086 7.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1349 REMARK 3 T33: 0.0966 T12: -0.0288 REMARK 3 T13: -0.0112 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 7.9648 L22: 3.7943 REMARK 3 L33: 5.8409 L12: 2.9444 REMARK 3 L13: 7.0526 L23: 2.5328 REMARK 3 S TENSOR REMARK 3 S11: -0.2781 S12: 0.5071 S13: 0.0494 REMARK 3 S21: -0.5143 S22: 0.2059 S23: 0.0143 REMARK 3 S31: -0.2478 S32: 0.3027 S33: 0.1142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1225 21.7320 18.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0921 REMARK 3 T33: 0.1032 T12: -0.0272 REMARK 3 T13: -0.0258 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 7.0395 L22: 6.4993 REMARK 3 L33: 2.7348 L12: -1.7875 REMARK 3 L13: 1.4449 L23: -2.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.1326 S12: 0.3060 S13: 0.3142 REMARK 3 S21: -0.2079 S22: 0.0135 S23: -0.1289 REMARK 3 S31: -0.0620 S32: 0.0797 S33: 0.1455 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3651 19.1178 24.0755 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2116 REMARK 3 T33: 0.1404 T12: 0.0238 REMARK 3 T13: -0.0181 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 5.1922 L22: 7.6879 REMARK 3 L33: 4.6008 L12: -3.6088 REMARK 3 L13: 3.3994 L23: -5.9324 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: -0.5197 S13: 0.0695 REMARK 3 S21: 0.2852 S22: 0.2566 S23: 0.2543 REMARK 3 S31: -0.1260 S32: -0.5585 S33: -0.1081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5833 27.5297 7.6419 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.1510 REMARK 3 T33: 0.2458 T12: -0.0371 REMARK 3 T13: -0.0678 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 6.9250 L22: 2.4289 REMARK 3 L33: 2.6640 L12: 4.0768 REMARK 3 L13: 4.3104 L23: 2.5386 REMARK 3 S TENSOR REMARK 3 S11: -0.4631 S12: 0.2423 S13: 0.4613 REMARK 3 S21: -0.3166 S22: 0.2976 S23: -0.2108 REMARK 3 S31: -0.6902 S32: 0.2796 S33: 0.0056 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3530 11.8089 15.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.0880 REMARK 3 T33: 0.1077 T12: 0.0076 REMARK 3 T13: -0.0045 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 6.0297 L22: 0.9175 REMARK 3 L33: 2.7769 L12: -0.7333 REMARK 3 L13: 2.8978 L23: -1.2160 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.0048 S13: -0.2081 REMARK 3 S21: -0.0983 S22: 0.0063 S23: -0.0548 REMARK 3 S31: 0.1253 S32: 0.0559 S33: -0.0266 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9569 12.4910 12.8413 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.0923 REMARK 3 T33: 0.0520 T12: -0.0371 REMARK 3 T13: -0.0233 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 7.7371 L22: 7.8166 REMARK 3 L33: 3.5362 L12: -3.9863 REMARK 3 L13: 2.4975 L23: -3.2981 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0307 S13: -0.3416 REMARK 3 S21: -0.0849 S22: 0.0756 S23: 0.1403 REMARK 3 S31: 0.0370 S32: -0.0419 S33: -0.0512 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.256 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM NA ACETATE, 1.7 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.69450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.14700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.14700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.04175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.14700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.14700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.34725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.14700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.14700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.04175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.14700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.14700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.34725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.69450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 130 REMARK 465 PRO A 131 REMARK 465 LYS A 132 REMARK 465 THR A 133 REMARK 465 PRO A 134 REMARK 465 LYS A 135 REMARK 465 PRO A 136 REMARK 465 GLN A 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 28 O HOH A 305 1.49 REMARK 500 OE1 GLN A 124 O HOH A 301 1.74 REMARK 500 O HOH A 340 O HOH A 357 1.78 REMARK 500 O HOH A 305 O HOH A 329 1.91 REMARK 500 O HOH A 311 O HOH A 392 1.93 REMARK 500 O HOH A 410 O HOH A 421 2.01 REMARK 500 OE1 GLN A 124 O HOH A 302 2.03 REMARK 500 O HOH A 394 O HOH A 406 2.04 REMARK 500 OD2 ASP A 64 O HOH A 303 2.08 REMARK 500 O HOH A 428 O HOH A 434 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 405 O HOH A 405 8665 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 10 C GLY A 10 O -0.111 REMARK 500 SER A 30 CB SER A 30 OG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 PHE A 70 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 TYR A 116 CZ - CE2 - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 109 51.54 -103.49 REMARK 500 THR A 109 51.54 -108.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CWG RELATED DB: PDB REMARK 900 6CWG CONTAINS SAME PROTEIN COMPLEXED WITH A9 ANTIBODY DBREF 6CWK A 1 137 PDB 6CWK 6CWK 1 137 SEQRES 1 A 137 GLN VAL GLN LEU ALA GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 137 ALA GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 137 ARG ASP PHE SER MET TYR MET LEU ALA TRP PHE ARG GLN SEQRES 4 A 137 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE MET SEQRES 5 A 137 CYS SER GLY GLY GLY GLY GLY THR TYR TYR ALA ASP SER SEQRES 6 A 137 MET GLN GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 A 137 LYS THR VAL ALA LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 A 137 ASP THR ALA VAL TYR TYR CYS ALA ALA SER THR THR TYR SEQRES 9 A 137 CYS SER ALA THR THR TYR SER SER ASP ARG LEU TYR ASP SEQRES 10 A 137 PHE TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLU SEQRES 11 A 137 PRO LYS THR PRO LYS PRO GLN HET SO4 A 201 5 HET SO4 A 202 5 HET EDO A 203 4 HET EDO A 204 4 HET CL A 205 1 HET CL A 206 1 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *141(H2 O) HELIX 1 AA1 ASP A 28 TYR A 32 5 5 HELIX 2 AA2 CYS A 53 GLY A 57 5 5 HELIX 3 AA3 ASP A 64 GLN A 67 5 4 HELIX 4 AA4 LYS A 89 THR A 93 5 5 HELIX 5 AA5 SER A 112 TYR A 116 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 80 MET A 85 -1 O MET A 85 N LEU A 18 SHEET 4 AA1 4 PHE A 70 ASP A 75 -1 N THR A 71 O GLN A 84 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 123 SER A 128 1 O THR A 126 N VAL A 12 SHEET 3 AA2 6 ALA A 94 SER A 101 -1 N TYR A 96 O THR A 123 SHEET 4 AA2 6 MET A 33 GLN A 39 -1 N PHE A 37 O TYR A 97 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 AA2 6 THR A 60 TYR A 62 -1 O TYR A 61 N ALA A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 123 SER A 128 1 O THR A 126 N VAL A 12 SHEET 3 AA3 4 ALA A 94 SER A 101 -1 N TYR A 96 O THR A 123 SHEET 4 AA3 4 PHE A 118 TRP A 119 -1 O PHE A 118 N ALA A 100 SSBOND 1 CYS A 22 CYS A 98 1555 1555 2.27 SSBOND 2 CYS A 53 CYS A 105 1555 1555 2.08 SITE 1 AC1 5 GLY A 10 LEU A 11 SER A 112 ARG A 114 SITE 2 AC1 5 HOH A 316 SITE 1 AC2 5 ASP A 75 ASN A 76 ALA A 77 HOH A 385 SITE 2 AC2 5 HOH A 388 SITE 1 AC3 5 SER A 7 GLY A 8 THR A 123 HOH A 301 SITE 2 AC3 5 HOH A 313 SITE 1 AC4 4 ASP A 28 TYR A 32 ASP A 113 TRP A 119 SITE 1 AC5 6 TYR A 62 ALA A 63 GLN A 67 GLY A 68 SITE 2 AC5 6 HOH A 403 HOH A 431 SITE 1 AC6 5 SER A 111 ASP A 113 HOH A 386 HOH A 406 SITE 2 AC6 5 HOH A 419 CRYST1 60.294 60.294 81.389 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012287 0.00000