HEADER OXIDOREDUCTASE 30-MAR-18 6CWO TITLE X-RAY CRYSTAL STRUCTURE OF FLAVOBACTERIUM JOHNSONIAE DIMANGANESE(II) TITLE 2 RIBONUCLEOTIDE REDUCTASE BETA SUBUNIT (AEROBIC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOTIDE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: \CF3 \CF0; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM JOHNSONIAE (STRAIN ATCC 17061 / SOURCE 3 DSM 2064 / UW101); SOURCE 4 ORGANISM_COMMON: CYTOPHAGA JOHNSONAE; SOURCE 5 ORGANISM_TAXID: 376686; SOURCE 6 STRAIN: ATCC 17061 / DSM 2064 / UW101; SOURCE 7 GENE: FJOH_4066; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RIBONUCLEOTIDE REDUCTASE, FOUR-HELIX BUNDLE, DIMANGANESE CLUSTER, KEYWDS 2 OXIDORETUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.O.MAGGIOLO,H.R.ROSE,A.K.BOAL REVDAT 2 13-MAR-24 6CWO 1 LINK REVDAT 1 27-JUN-18 6CWO 0 JRNL AUTH H.R.ROSE,M.K.GHOSH,A.O.MAGGIOLO,C.J.POLLOCK,E.J.BLAESI, JRNL AUTH 2 V.HAJJ,Y.WEI,L.J.RAJAKOVICH,W.C.CHANG,Y.HAN,M.HAJJ,C.KREBS, JRNL AUTH 3 A.SILAKOV,M.E.PANDELIA,J.M.BOLLINGER,A.K.BOAL JRNL TITL STRUCTURAL BASIS FOR SUPEROXIDE ACTIVATION OF FLAVOBACTERIUM JRNL TITL 2 JOHNSONIAE CLASS I RIBONUCLEOTIDE REDUCTASE AND FOR RADICAL JRNL TITL 3 INITIATION BY ITS DIMANGANESE COFACTOR. JRNL REF BIOCHEMISTRY V. 57 2679 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29609464 JRNL DOI 10.1021/ACS.BIOCHEM.8B00247 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 53688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5157 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4870 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6975 ; 1.299 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11204 ; 0.961 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 5.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;37.725 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 909 ;13.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 769 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5767 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1232 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6CWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 73.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM ACETATE, 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.94833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.89667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 PHE A 320 REMARK 465 PHE A 321 REMARK 465 ALA A 322 REMARK 465 LYS A 323 REMARK 465 ARG A 324 REMARK 465 ASP A 332 REMARK 465 LYS A 333 REMARK 465 SER A 334 REMARK 465 ILE A 335 REMARK 465 THR A 336 REMARK 465 ALA A 337 REMARK 465 ASN A 338 REMARK 465 ASP A 339 REMARK 465 LEU A 340 REMARK 465 PHE A 341 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LYS B 281 REMARK 465 VAL B 282 REMARK 465 GLU B 283 REMARK 465 ASP B 301 REMARK 465 ASP B 302 REMARK 465 PHE B 303 REMARK 465 PHE B 304 REMARK 465 ALA B 305 REMARK 465 LYS B 306 REMARK 465 ARG B 307 REMARK 465 PRO B 308 REMARK 465 VAL B 309 REMARK 465 GLU B 310 REMARK 465 TYR B 311 REMARK 465 THR B 312 REMARK 465 LYS B 313 REMARK 465 HIS B 314 REMARK 465 ASP B 315 REMARK 465 LYS B 316 REMARK 465 SER B 317 REMARK 465 ILE B 318 REMARK 465 THR B 319 REMARK 465 ALA B 320 REMARK 465 ASN B 321 REMARK 465 ASP B 322 REMARK 465 LEU B 323 REMARK 465 PHE B 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 325 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 129 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 33 -8.23 -59.92 REMARK 500 LEU A 158 -65.51 -100.30 REMARK 500 VAL A 162 -46.70 -136.44 REMARK 500 VAL B 162 -46.34 -137.69 REMARK 500 ASP B 218 -145.57 -104.50 REMARK 500 PHE B 244 33.92 -98.73 REMARK 500 ASP B 279 86.56 53.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 GLU A 67 OE2 55.4 REMARK 620 3 GLU A 97 OE1 92.0 146.4 REMARK 620 4 HIS A 100 ND1 101.0 97.7 96.4 REMARK 620 5 GLU A 195 OE2 161.6 106.2 106.2 80.3 REMARK 620 6 HOH A 551 O 84.5 84.8 84.0 174.5 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 76 OD1 REMARK 620 2 ASN B 76 OD1 155.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 GLU A 160 OE1 121.3 REMARK 620 3 GLU A 195 OE1 140.9 97.4 REMARK 620 4 GLU A 195 OE2 91.5 147.2 50.5 REMARK 620 5 HIS A 198 ND1 83.9 95.0 99.5 85.6 REMARK 620 6 HOH A 502 O 71.2 80.9 113.2 115.1 147.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 506 O REMARK 620 2 HOH A 515 O 90.1 REMARK 620 3 HOH A 534 O 82.7 170.9 REMARK 620 4 HOH A 539 O 168.6 101.4 86.0 REMARK 620 5 HOH A 554 O 92.2 82.9 92.0 89.4 REMARK 620 6 HOH A 557 O 90.8 99.2 86.3 87.2 176.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 67 OE1 REMARK 620 2 GLU B 67 OE2 57.8 REMARK 620 3 GLU B 97 OE1 91.8 147.2 REMARK 620 4 HIS B 100 ND1 100.6 99.3 98.1 REMARK 620 5 GLU B 195 OE2 156.8 100.0 107.8 89.1 REMARK 620 6 HOH B 529 O 90.0 85.4 82.6 169.4 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 97 OE2 REMARK 620 2 GLU B 160 OE1 115.6 REMARK 620 3 GLU B 195 OE1 146.3 98.0 REMARK 620 4 GLU B 195 OE2 93.8 150.5 52.6 REMARK 620 5 HIS B 198 ND1 79.1 92.6 100.9 91.3 REMARK 620 6 HOH B 524 O 74.1 77.5 115.1 114.5 143.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 402 DBREF 6CWO A 1 341 UNP A5FCJ5 A5FCJ5_FLAJ1 1 324 DBREF 6CWO B 1 324 UNP A5FCJ5 A5FCJ5_FLAJ1 1 324 SEQADV 6CWO MET A -19 UNP A5FCJ5 INITIATING METHIONINE SEQADV 6CWO GLY A -18 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER A -17 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER A -16 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -15 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -14 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -13 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -12 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -11 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A -10 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER A -9 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER A -8 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO GLY A -7 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO LEU A -6 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO VAL A -5 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO PRO A -4 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO ARG A -3 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO GLY A -2 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER A -1 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS A 0 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO MET B -19 UNP A5FCJ5 INITIATING METHIONINE SEQADV 6CWO GLY B -18 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER B -17 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER B -16 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -15 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -14 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -13 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -12 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -11 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B -10 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER B -9 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER B -8 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO GLY B -7 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO LEU B -6 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO VAL B -5 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO PRO B -4 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO ARG B -3 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO GLY B -2 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO SER B -1 UNP A5FCJ5 EXPRESSION TAG SEQADV 6CWO HIS B 0 UNP A5FCJ5 EXPRESSION TAG SEQRES 1 A 344 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 344 LEU VAL PRO ARG GLY SER HIS MET SER ILE PHE ASP LYS SEQRES 3 A 344 ARG VAL ASN TYR LYS PRO PHE GLU TYR PRO GLU VAL LEU SEQRES 4 A 344 GLN PHE THR GLU ALA ILE ASN LYS ALA TYR TRP VAL HIS SEQRES 5 A 344 THR GLU VAL ASP PHE THR ALA ASP THR GLN ASP PHE HIS SEQRES 6 A 344 ALA HIS LEU SER LEU ALA GLU LYS THR ALA VAL LYS ASN SEQRES 7 A 344 SER LEU LEU ALA ILE ALA GLN ILE GLU VAL ALA VAL LYS SEQRES 8 A 344 SER PHE TRP GLY ASN ILE TYR GLU HIS PHE PRO LYS PRO SEQRES 9 A 344 GLU PHE ASN GLY LEU GLY SER THR PHE ALA GLU CYS GLU SEQRES 10 A 344 PHE ARG HIS SER GLU ALA TYR SER ARG LEU LEU GLU VAL SEQRES 11 A 344 LEU GLY TYR ASN ASP GLU PHE GLU LYS LEU LEU ASP VAL SEQRES 12 A 344 PRO VAL ILE ARG ARG ARG VAL ASP TYR LEU SER ASN VAL SEQRES 13 A 344 LEU LYS ASP THR LYS SER GLN ASP ASN ARG LYS TYR MET SEQRES 14 A 344 VAL SER LEU ILE LEU PHE SER ILE LEU ILE GLU ASN VAL SEQRES 15 A 344 SER LEU PHE SER GLN PHE ALA ILE LEU LEU SER PHE THR SEQRES 16 A 344 ARG PHE LYS GLY TYR MET LYS ASN VAL SER ASN ILE ILE SEQRES 17 A 344 ALA TRP THR SER ILE ASP GLU GLN ILE HIS ALA ASN GLY SEQRES 18 A 344 GLY ILE TYR ILE ILE ASN LYS ILE ARG GLU GLU PHE PRO SEQRES 19 A 344 ASP TYR PHE ASP GLU GLU THR LEU ALA LEU VAL ARG GLU SEQRES 20 A 344 THR VAL LYS ASP SER ILE ALA VAL GLU SER ASP ILE LEU SEQRES 21 A 344 ASP TRP ILE PHE GLU GLU GLY GLU ILE GLU SER ILE LYS SEQRES 22 A 344 LYS GLY ASP LEU VAL ASN PHE MET LYS PHE ARG ILE ASP SEQRES 23 A 344 GLU SER LEU LYS GLN ILE ASN ILE PRO VAL ILE PHE ASP SEQRES 24 A 344 VAL LYS VAL GLU ASP TYR LYS ALA LEU ALA TRP PHE GLU SEQRES 25 A 344 GLU GLU VAL PHE ALA ASN SER LEU ASP ASP PHE PHE ALA SEQRES 26 A 344 LYS ARG PRO VAL GLU TYR THR LYS HIS ASP LYS SER ILE SEQRES 27 A 344 THR ALA ASN ASP LEU PHE SEQRES 1 B 344 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 344 LEU VAL PRO ARG GLY SER HIS MET SER ILE PHE ASP LYS SEQRES 3 B 344 ARG VAL ASN TYR LYS PRO PHE GLU TYR PRO GLU VAL LEU SEQRES 4 B 344 GLN PHE THR GLU ALA ILE ASN LYS ALA TYR TRP VAL HIS SEQRES 5 B 344 THR GLU VAL ASP PHE THR ALA ASP THR GLN ASP PHE HIS SEQRES 6 B 344 ALA HIS LEU SER LEU ALA GLU LYS THR ALA VAL LYS ASN SEQRES 7 B 344 SER LEU LEU ALA ILE ALA GLN ILE GLU VAL ALA VAL LYS SEQRES 8 B 344 SER PHE TRP GLY ASN ILE TYR GLU HIS PHE PRO LYS PRO SEQRES 9 B 344 GLU PHE ASN GLY LEU GLY SER THR PHE ALA GLU CYS GLU SEQRES 10 B 344 PHE ARG HIS SER GLU ALA TYR SER ARG LEU LEU GLU VAL SEQRES 11 B 344 LEU GLY TYR ASN ASP GLU PHE GLU LYS LEU LEU ASP VAL SEQRES 12 B 344 PRO VAL ILE ARG ARG ARG VAL ASP TYR LEU SER ASN VAL SEQRES 13 B 344 LEU LYS ASP THR LYS SER GLN ASP ASN ARG LYS TYR MET SEQRES 14 B 344 VAL SER LEU ILE LEU PHE SER ILE LEU ILE GLU ASN VAL SEQRES 15 B 344 SER LEU PHE SER GLN PHE ALA ILE LEU LEU SER PHE THR SEQRES 16 B 344 ARG PHE LYS GLY TYR MET LYS ASN VAL SER ASN ILE ILE SEQRES 17 B 344 ALA TRP THR SER ILE ASP GLU GLN ILE HIS ALA ASN GLY SEQRES 18 B 344 GLY ILE TYR ILE ILE ASN LYS ILE ARG GLU GLU PHE PRO SEQRES 19 B 344 ASP TYR PHE ASP GLU GLU THR LEU ALA LEU VAL ARG GLU SEQRES 20 B 344 THR VAL LYS ASP SER ILE ALA VAL GLU SER ASP ILE LEU SEQRES 21 B 344 ASP TRP ILE PHE GLU GLU GLY GLU ILE GLU SER ILE LYS SEQRES 22 B 344 LYS GLY ASP LEU VAL ASN PHE MET LYS PHE ARG ILE ASP SEQRES 23 B 344 GLU SER LEU LYS GLN ILE ASN ILE PRO VAL ILE PHE ASP SEQRES 24 B 344 VAL LYS VAL GLU ASP TYR LYS ALA LEU ALA TRP PHE GLU SEQRES 25 B 344 GLU GLU VAL PHE ALA ASN SER LEU ASP ASP PHE PHE ALA SEQRES 26 B 344 LYS ARG PRO VAL GLU TYR THR LYS HIS ASP LYS SER ILE SEQRES 27 B 344 THR ALA ASN ASP LEU PHE HET MN A 401 1 HET MN A 402 1 HET MG A 403 1 HET MG A 404 1 HET MN B 401 1 HET MN B 402 1 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION FORMUL 3 MN 4(MN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *96(H2 O) HELIX 1 AA1 GLU A 17 ALA A 28 1 12 HELIX 2 AA2 VAL A 31 VAL A 35 5 5 HELIX 3 AA3 PHE A 37 LEU A 48 1 12 HELIX 4 AA4 SER A 49 VAL A 68 1 20 HELIX 5 AA5 PHE A 73 HIS A 80 5 8 HELIX 6 AA6 LYS A 83 GLY A 112 1 30 HELIX 7 AA7 TYR A 113 LYS A 119 1 7 HELIX 8 AA8 LEU A 120 ASP A 122 5 3 HELIX 9 AA9 VAL A 123 LYS A 138 1 16 HELIX 10 AB1 ASP A 144 LEU A 158 1 15 HELIX 11 AB2 LEU A 164 GLY A 179 1 16 HELIX 12 AB3 MET A 181 PHE A 213 1 33 HELIX 13 AB4 PRO A 214 PHE A 217 5 4 HELIX 14 AB5 ASP A 218 PHE A 244 1 27 HELIX 15 AB6 LYS A 253 ILE A 272 1 20 HELIX 16 AB7 LYS A 281 LYS A 286 1 6 HELIX 17 AB8 ALA A 289 SER A 299 1 11 HELIX 18 AB9 GLU B 17 ALA B 28 1 12 HELIX 19 AC1 VAL B 31 VAL B 35 5 5 HELIX 20 AC2 PHE B 37 LEU B 48 1 12 HELIX 21 AC3 SER B 49 VAL B 68 1 20 HELIX 22 AC4 PHE B 73 GLY B 75 5 3 HELIX 23 AC5 ASN B 76 PHE B 81 1 6 HELIX 24 AC6 LYS B 83 LEU B 111 1 29 HELIX 25 AC7 TYR B 113 LYS B 119 1 7 HELIX 26 AC8 LEU B 120 ASP B 122 5 3 HELIX 27 AC9 VAL B 123 LYS B 138 1 16 HELIX 28 AD1 ASP B 144 LEU B 158 1 15 HELIX 29 AD2 LEU B 164 GLY B 179 1 16 HELIX 30 AD3 MET B 181 PHE B 213 1 33 HELIX 31 AD4 PRO B 214 PHE B 217 5 4 HELIX 32 AD5 GLU B 219 PHE B 244 1 26 HELIX 33 AD6 LYS B 253 ILE B 272 1 20 HELIX 34 AD7 ASP B 284 ALA B 289 5 6 HELIX 35 AD8 TRP B 290 LEU B 300 1 11 LINK OE1 GLU A 67 MN MN A 401 1555 1555 2.36 LINK OE2 GLU A 67 MN MN A 401 1555 1555 2.27 LINK OD1 ASN A 76 MG MG A 404 1555 1555 2.13 LINK OE1 GLU A 97 MN MN A 401 1555 1555 2.14 LINK OE2 GLU A 97 MN MN A 402 1555 1555 2.01 LINK ND1 HIS A 100 MN MN A 401 1555 1555 2.41 LINK OE1 GLU A 160 MN MN A 402 1555 1555 2.27 LINK OE2 GLU A 195 MN MN A 401 1555 1555 2.26 LINK OE1 GLU A 195 MN MN A 402 1555 1555 1.92 LINK OE2 GLU A 195 MN MN A 402 1555 1555 2.75 LINK ND1 HIS A 198 MN MN A 402 1555 1555 2.29 LINK MN MN A 401 O HOH A 551 1555 1555 2.33 LINK MN MN A 402 O HOH A 502 1555 1555 2.29 LINK MG MG A 403 O HOH A 506 1555 1445 2.10 LINK MG MG A 403 O HOH A 515 1555 1445 2.04 LINK MG MG A 403 O HOH A 534 1555 1555 2.08 LINK MG MG A 403 O HOH A 539 1555 1555 1.85 LINK MG MG A 403 O HOH A 554 1555 1555 2.18 LINK MG MG A 403 O HOH A 557 1555 1445 2.18 LINK MG MG A 404 OD1 ASN B 76 1555 1555 2.25 LINK OE1 GLU B 67 MN MN B 401 1555 1555 2.24 LINK OE2 GLU B 67 MN MN B 401 1555 1555 2.26 LINK OE1 GLU B 97 MN MN B 401 1555 1555 2.22 LINK OE2 GLU B 97 MN MN B 402 1555 1555 2.12 LINK ND1 HIS B 100 MN MN B 401 1555 1555 2.29 LINK OE1 GLU B 160 MN MN B 402 1555 1555 2.50 LINK OE2 GLU B 195 MN MN B 401 1555 1555 2.07 LINK OE1 GLU B 195 MN MN B 402 1555 1555 2.20 LINK OE2 GLU B 195 MN MN B 402 1555 1555 2.60 LINK ND1 HIS B 198 MN MN B 402 1555 1555 2.42 LINK MN MN B 401 O HOH B 529 1555 1555 2.35 LINK MN MN B 402 O HOH B 524 1555 1555 2.76 CISPEP 1 LYS A 11 PRO A 12 0 -1.52 CISPEP 2 LYS B 11 PRO B 12 0 -3.90 SITE 1 AC1 6 GLU A 67 GLU A 97 HIS A 100 GLU A 195 SITE 2 AC1 6 MN A 402 HOH A 551 SITE 1 AC2 6 GLU A 97 GLU A 160 GLU A 195 HIS A 198 SITE 2 AC2 6 MN A 401 HOH A 502 SITE 1 AC3 6 HOH A 506 HOH A 515 HOH A 534 HOH A 539 SITE 2 AC3 6 HOH A 554 HOH A 557 SITE 1 AC4 2 ASN A 76 ASN B 76 SITE 1 AC5 6 GLU B 67 GLU B 97 HIS B 100 GLU B 195 SITE 2 AC5 6 MN B 402 HOH B 529 SITE 1 AC6 7 GLU B 97 GLU B 160 GLU B 195 HIS B 198 SITE 2 AC6 7 MN B 401 HOH B 524 HOH B 529 CRYST1 53.690 53.690 221.845 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018625 0.010753 0.000000 0.00000 SCALE2 0.000000 0.021507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004508 0.00000