HEADER CYTOKINE 30-MAR-18 6CWS TITLE THE NMR SOLUTION STRUCTURE OF CCL28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C MOTIF CHEMOKINE 28; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUCOSAE-ASSOCIATED EPITHELIAL CHEMOKINE,MEC,PROTEIN CCK1, COMPND 5 SMALL-INDUCIBLE CYTOKINE A28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCL28, SCYA28; SOURCE 6 EXPRESSION_SYSTEM: APHYOSEMION ETSAMENSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 310954; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CCL28, CHEMOKINE, ANTIFUNGAL ACTIVITY, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.THOMAS,F.C.PETERSON,B.F.VOLKMAN REVDAT 5 14-JUN-23 6CWS 1 REMARK REVDAT 4 04-DEC-19 6CWS 1 REMARK REVDAT 3 20-FEB-19 6CWS 1 REMARK REVDAT 2 29-AUG-18 6CWS 1 JRNL REVDAT 1 04-JUL-18 6CWS 0 JRNL AUTH M.A.THOMAS,J.HE,F.C.PETERSON,A.R.HUPPLER,B.F.VOLKMAN JRNL TITL THE SOLUTION STRUCTURE OF CCL28 REVEALS STRUCTURAL LABILITY JRNL TITL 2 THAT DOES NOT CONSTRAIN ANTIFUNGAL ACTIVITY. JRNL REF J. MOL. BIOL. V. 430 3266 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29913161 JRNL DOI 10.1016/J.JMB.2018.06.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 1487 REMARK 3 RESTRAINTS, 1382 NOE-DERIVED DISTANCE CONSTRAINTS AND 105 REMARK 3 DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 6CWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000232852. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 15 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 CCL28, 25 MM [U-99% 2H] MES, REMARK 210 0.02 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600.13 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.6, NMRPIPE, XEASY, REMARK 210 GARANT, X-PLOR NIH REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 31 OD1 ASP A 38 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 105.49 -58.69 REMARK 500 1 HIS A 17 -80.68 68.82 REMARK 500 1 ASP A 36 -63.75 -168.72 REMARK 500 1 ASP A 38 -71.97 -120.69 REMARK 500 1 ASP A 40 28.18 -72.59 REMARK 500 1 CYS A 80 -62.54 -120.69 REMARK 500 1 LYS A 88 125.91 173.07 REMARK 500 1 ASN A 92 -71.58 -64.83 REMARK 500 1 ARG A 93 -9.19 -143.05 REMARK 500 1 LYS A 98 99.86 -168.01 REMARK 500 1 THR A 106 88.74 59.83 REMARK 500 2 ILE A 4 -54.74 75.40 REMARK 500 2 HIS A 17 -74.79 65.79 REMARK 500 2 ASP A 36 -50.15 -170.73 REMARK 500 2 ASP A 38 -72.36 -128.59 REMARK 500 2 ASP A 40 44.87 -76.20 REMARK 500 2 LYS A 72 108.33 -53.68 REMARK 500 2 HIS A 85 -163.11 66.50 REMARK 500 2 LYS A 88 -47.32 72.99 REMARK 500 2 ARG A 89 175.12 67.95 REMARK 500 2 HIS A 99 -69.05 -129.00 REMARK 500 3 PRO A 6 36.49 -73.97 REMARK 500 3 ILE A 7 84.52 66.33 REMARK 500 3 HIS A 17 -78.63 64.62 REMARK 500 3 ASP A 36 -148.47 -174.75 REMARK 500 3 CYS A 39 -2.14 -171.71 REMARK 500 3 GLN A 96 -46.98 173.09 REMARK 500 3 LYS A 98 -73.87 -145.33 REMARK 500 4 GLU A 2 149.16 69.72 REMARK 500 4 ILE A 7 90.23 62.16 REMARK 500 4 ALA A 8 20.03 -147.97 REMARK 500 4 HIS A 17 -67.84 68.82 REMARK 500 4 ASP A 36 -63.05 -156.57 REMARK 500 4 ASP A 38 -72.96 -119.70 REMARK 500 4 LYS A 72 -82.52 -48.83 REMARK 500 4 LYS A 73 -43.96 166.30 REMARK 500 4 ASN A 74 8.36 -68.25 REMARK 500 4 LYS A 76 102.06 70.76 REMARK 500 4 ASN A 78 29.11 -143.76 REMARK 500 4 CYS A 80 -64.84 -101.00 REMARK 500 4 LYS A 84 30.36 -143.56 REMARK 500 4 LYS A 88 -162.49 -78.07 REMARK 500 4 ASN A 92 108.19 70.09 REMARK 500 4 ALA A 94 22.91 -140.18 REMARK 500 4 HIS A 95 102.00 72.22 REMARK 500 4 GLN A 96 96.81 -65.98 REMARK 500 4 TYR A 102 -68.66 71.50 REMARK 500 5 ILE A 4 -38.18 -165.51 REMARK 500 5 ALA A 8 -74.15 -91.07 REMARK 500 5 SER A 9 -46.61 -139.23 REMARK 500 REMARK 500 THIS ENTRY HAS 235 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30445 RELATED DB: BMRB REMARK 900 THE NMR SOLUTION STRUCTURE OF CCL28 DBREF 6CWS A 1 108 UNP Q9NRJ3 CCL28_HUMAN 20 127 SEQRES 1 A 108 SER GLU ALA ILE LEU PRO ILE ALA SER SER CYS CYS THR SEQRES 2 A 108 GLU VAL SER HIS HIS ILE SER ARG ARG LEU LEU GLU ARG SEQRES 3 A 108 VAL ASN MET CYS ARG ILE GLN ARG ALA ASP GLY ASP CYS SEQRES 4 A 108 ASP LEU ALA ALA VAL ILE LEU HIS VAL LYS ARG ARG ARG SEQRES 5 A 108 ILE CYS VAL SER PRO HIS ASN HIS THR VAL LYS GLN TRP SEQRES 6 A 108 MET LYS VAL GLN ALA ALA LYS LYS ASN GLY LYS GLY ASN SEQRES 7 A 108 VAL CYS HIS ARG LYS LYS HIS HIS GLY LYS ARG ASN SER SEQRES 8 A 108 ASN ARG ALA HIS GLN GLY LYS HIS GLU THR TYR GLY HIS SEQRES 9 A 108 LYS THR PRO TYR HELIX 1 AA1 SER A 20 GLU A 25 1 6 HELIX 2 AA2 ASN A 59 ALA A 71 1 13 SHEET 1 AA1 3 VAL A 27 GLN A 33 0 SHEET 2 AA1 3 ALA A 43 VAL A 48 -1 O HIS A 47 N ASN A 28 SHEET 3 AA1 3 ARG A 52 VAL A 55 -1 O VAL A 55 N VAL A 44 SSBOND 1 CYS A 11 CYS A 39 1555 1555 2.01 SSBOND 2 CYS A 12 CYS A 54 1555 1555 2.03 SSBOND 3 CYS A 30 CYS A 80 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1