HEADER OXIDOREDUCTASE 04-APR-18 6CXT TITLE CRYSTAL STRUCTURE OF FAD-DEPENDENT DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE FOLD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP1(CP); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BUTYRYL-COA DEHYDROGENASE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: BMP3; COMPND 10 EC: 1.3.8.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS MEDITERRANEA (STRAIN ATCC 700492 / SOURCE 3 JCM 21426 / NBRC 103028 / MMB-1); SOURCE 4 ORGANISM_TAXID: 717774; SOURCE 5 STRAIN: ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1; SOURCE 6 GENE: MARME_4088; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MARINOMONAS MEDITERRANEA (STRAIN ATCC 700492 / SOURCE 11 JCM 21426 / NBRC 103028 / MMB-1); SOURCE 12 ORGANISM_TAXID: 717774; SOURCE 13 STRAIN: ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1; SOURCE 14 GENE: MARME_4091; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL CARRIER PROTEIN, FAD-DEPENDENT ENZYME, NATURAL PRODUCT KEYWDS 2 BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.AGARWAL REVDAT 4 04-OCT-23 6CXT 1 REMARK REVDAT 3 18-DEC-19 6CXT 1 REMARK REVDAT 2 06-MAR-19 6CXT 1 JRNL REVDAT 1 16-JAN-19 6CXT 0 JRNL AUTH H.R.THAPA,J.M.ROBBINS,B.S.MOORE,V.AGARWAL JRNL TITL INSIGHTS INTO THIOTEMPLATED PYRROLE BIOSYNTHESIS GAINED FROM JRNL TITL 2 THE CRYSTAL STRUCTURE OF FLAVIN-DEPENDENT OXIDASE IN COMPLEX JRNL TITL 3 WITH CARRIER PROTEIN. JRNL REF BIOCHEMISTRY V. 58 918 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30620182 JRNL DOI 10.1021/ACS.BIOCHEM.8B01177 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 56340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1933 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4897 ; 1.881 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 6.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;37.730 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;14.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2740 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 2.794 ; 2.709 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2223 ; 3.938 ; 4.039 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1826 ; 3.496 ; 3.034 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5955 ; 7.642 ;38.285 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.10 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4IRN & 4ETW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MM MAGNESIUM ACETATE, 50 MM SODIUM REMARK 280 CACODYLATE, PH 6.0, 1.8 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.04633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.09267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.04633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 156.09267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.04633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 156.09267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.04633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 156.09267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.20800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.42691 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 312.18533 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 52.20800 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 90.42691 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 312.18533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 230 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 SER A 77 REMARK 465 SER B 24 REMARK 465 ALA B 25 REMARK 465 PRO B 26 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 GLU B 29 REMARK 465 ASP B 30 REMARK 465 ASN B 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 284 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -111.52 49.80 REMARK 500 ALA A 17 -150.18 52.87 REMARK 500 CYS B 94 -62.40 -122.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FK4 A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 DBREF 6CXT A 1 77 UNP F2K074 F2K074_MARM1 1 77 DBREF 6CXT B 1 380 UNP F2K077 F2K077_MARM1 1 380 SEQRES 1 A 77 MET ILE GLU LYS LEU ILE HIS PHE ILE ASN ASN ASP LEU SEQRES 2 A 77 LEU GLU GLY ALA ALA ASP ASP LEU ASP GLN ASN THR PRO SEQRES 3 A 77 LEU LEU GLU LEU GLY ILE LEU ASP SER LEU SER MET VAL SEQRES 4 A 77 LEU LEU LEU ALA HIS ILE ASP GLN GLN TYR GLY VAL LYS SEQRES 5 A 77 ILE PRO GLU HIS GLU ILE ASN PRO GLU HIS PHE GLU ASN SEQRES 6 A 77 VAL ALA THR LEU ALA ALA LEU ILE ASN GLN LEU SER SEQRES 1 B 380 MET ASN PHE GLU TRP THR HIS GLU GLN ALA GLU LEU PHE SEQRES 2 B 380 GLU HIS ALA LEU ARG PHE GLY LYS GLU LEU SER ALA PRO SEQRES 3 B 380 LEU GLN GLU ASP ASN GLY PHE PRO ARG ASP ASN TRP ASN SEQRES 4 B 380 ALA LEU GLY ASP PHE GLY TYR PHE GLY LEU PRO ILE PRO SEQRES 5 B 380 GLU LYS TYR ALA LYS ASP GLY SER GLY PHE ASP ILE LEU SEQRES 6 B 380 THR THR ILE LYS ILE ILE GLU GLY LEU GLY GLN SER CYS SEQRES 7 B 380 THR ASP THR GLY LEU LEU PHE ALA GLY ALA ALA HIS THR SEQRES 8 B 380 PHE ALA CYS SER MET PRO ILE LEU GLU HIS GLY SER GLU SEQRES 9 B 380 THR LEU LYS HIS GLN LEU LEU PRO ASP LEU ALA THR GLY SEQRES 10 B 380 ARG LYS ILE ALA ALA ASN ALA ILE SER GLU ALA SER ALA SEQRES 11 B 380 GLY SER ASP ILE SER ASN LEU ALA THR THR ALA GLN LYS SEQRES 12 B 380 GLU GLY ASP TYR TYR VAL LEU ASN GLY GLY LYS SER TYR SEQRES 13 B 380 VAL THR ASN GLY SER ILE ALA ASP TYR TYR VAL VAL TYR SEQRES 14 B 380 ALA THR THR ASN LYS LYS HIS GLY TYR LEU GLY GLN THR SEQRES 15 B 380 ALA PHE VAL VAL PRO ARG ASN THR PRO GLY ILE SER VAL SEQRES 16 B 380 GLY ASN ASP TYR HIS LYS LEU GLY LEU ARG SER ALA PRO SEQRES 17 B 380 LEU ASN GLN VAL PHE PHE ASP ASN CYS THR ILE HIS LYS SEQRES 18 B 380 ASP TYR ALA LEU GLY ARG GLU GLY GLN GLY ALA ARG ILE SEQRES 19 B 380 PHE ALA ALA SER MET ASP TRP GLU ARG CYS CYS LEU PHE SEQRES 20 B 380 ALA ILE PHE VAL GLY ALA MET GLN ARG ASP LEU ASN GLN SEQRES 21 B 380 CYS ILE GLU TYR ALA ASN THR ARG MET GLN GLY ASP LYS SEQRES 22 B 380 THR ILE SER ARG PHE GLN ALA VAL SER HIS ARG ILE ALA SEQRES 23 B 380 ASP MET GLY VAL ARG LEU GLU SER ALA ARG LEU MET LEU SEQRES 24 B 380 TYR TYR ALA ALA TRP GLN LYS SER GLN ASP VAL ASP ASN SEQRES 25 B 380 THR LYS ALA VAL ALA MET SER LYS LEU ALA ILE SER GLU SEQRES 26 B 380 ALA PHE VAL GLN SER GLY ILE ASP SER ILE ARG VAL HIS SEQRES 27 B 380 GLY ALA LEU GLY TYR LEU ASP GLU GLY ARG VAL ASN ASN SEQRES 28 B 380 SER ILE LYS ASP ALA LEU GLY SER VAL LEU PHE SER GLY SEQRES 29 B 380 THR SER ASP ILE GLN ARG GLU LEU ILE CYS ASN ARG LEU SEQRES 30 B 380 GLY LEU LEU HET FK4 A 100 28 HET FAD B 401 53 HET EDO B 402 4 HET EDO B 403 4 HETNAM FK4 S-[2-({N-[(2R)-2-HYDROXY-4-{[(R)-HYDROXY(OXO)- HETNAM 2 FK4 LAMBDA~5~-PHOSPHANYL]OXY}-3,3-DIMETHYLBUTANOYL]-BETA- HETNAM 3 FK4 ALANYL}AMINO)ETHYL] 1H-PYRROLE-2-CARBOTHIOATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FK4 C16 H26 N3 O7 P S FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *345(H2 O) HELIX 1 AA1 ILE A 6 ASP A 12 1 7 HELIX 2 AA2 ASP A 34 GLY A 50 1 17 HELIX 3 AA3 PRO A 54 ILE A 58 5 5 HELIX 4 AA4 ASN A 65 LEU A 76 1 12 HELIX 5 AA5 THR B 6 GLY B 20 1 15 HELIX 6 AA6 LYS B 21 LEU B 23 5 3 HELIX 7 AA7 PRO B 34 GLY B 45 1 12 HELIX 8 AA8 ASP B 63 CYS B 78 1 16 HELIX 9 AA9 ASP B 80 CYS B 94 1 15 HELIX 10 AB1 CYS B 94 GLY B 102 1 9 HELIX 11 AB2 SER B 103 ALA B 115 1 13 HELIX 12 AB3 ASN B 173 LEU B 179 5 7 HELIX 13 AB4 GLN B 230 LEU B 246 1 17 HELIX 14 AB5 PHE B 247 ARG B 268 1 22 HELIX 15 AB6 PHE B 278 SER B 307 1 30 HELIX 16 AB7 ASN B 312 GLY B 339 1 28 HELIX 17 AB8 GLY B 339 LEU B 344 1 6 HELIX 18 AB9 ASP B 345 ARG B 348 5 4 HELIX 19 AC1 ASN B 350 VAL B 360 1 11 HELIX 20 AC2 THR B 365 GLY B 378 1 14 SHEET 1 AA1 4 ALA B 121 ALA B 124 0 SHEET 2 AA1 4 TYR B 165 THR B 171 1 O VAL B 167 N ALA B 124 SHEET 3 AA1 4 GLN B 181 PRO B 187 -1 O VAL B 186 N TYR B 166 SHEET 4 AA1 4 ALA B 224 LEU B 225 -1 O LEU B 225 N ALA B 183 SHEET 1 AA2 4 THR B 140 GLU B 144 0 SHEET 2 AA2 4 TYR B 147 THR B 158 -1 O TYR B 147 N GLU B 144 SHEET 3 AA2 4 LEU B 209 HIS B 220 -1 O VAL B 212 N LYS B 154 SHEET 4 AA2 4 ILE B 193 VAL B 195 -1 N SER B 194 O PHE B 213 SHEET 1 AA3 2 MET B 269 GLN B 270 0 SHEET 2 AA3 2 LYS B 273 THR B 274 -1 O LYS B 273 N GLN B 270 LINK OG SER A 35 P02 FK4 A 100 1555 1555 1.61 SITE 1 AC1 21 SER A 35 HOH A 204 HOH A 205 HOH A 207 SITE 2 AC1 21 HOH A 219 HOH A 222 ALA B 89 ASN B 123 SITE 3 AC1 21 ILE B 125 SER B 132 ALA B 236 GLU B 242 SITE 4 AC1 21 ARG B 243 PHE B 362 SER B 363 GLY B 364 SITE 5 AC1 21 ILE B 368 FAD B 401 HOH B 542 HOH B 607 SITE 6 AC1 21 HOH B 661 SITE 1 AC2 31 FK4 A 100 ASN B 123 ILE B 125 SER B 126 SITE 2 AC2 31 GLY B 131 SER B 132 TYR B 156 THR B 158 SITE 3 AC2 31 LEU B 209 ARG B 268 GLN B 270 PHE B 278 SITE 4 AC2 31 GLN B 279 VAL B 281 ARG B 284 ARG B 336 SITE 5 AC2 31 VAL B 337 GLY B 339 ALA B 340 LEU B 361 SITE 6 AC2 31 PHE B 362 THR B 365 ASP B 367 HOH B 512 SITE 7 AC2 31 HOH B 601 HOH B 610 HOH B 621 HOH B 633 SITE 8 AC2 31 HOH B 635 HOH B 660 HOH B 718 SITE 1 AC3 7 ASP B 80 THR B 81 GLY B 82 LEU B 204 SITE 2 AC3 7 ARG B 205 SER B 206 ASP B 355 SITE 1 AC4 2 ARG B 291 HOH B 502 CRYST1 104.416 104.416 234.139 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009577 0.005529 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004271 0.00000