data_6CY0 # _entry.id 6CY0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CY0 pdb_00006cy0 10.2210/pdb6cy0/pdb WWPDB D_1000233659 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-29 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CY0 _pdbx_database_status.recvd_initial_deposition_date 2018-04-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details ;5VR4 contains the same RNA octamer with a differnt 4'-modified base. ; _pdbx_database_related.db_id 5VR4 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Harp, J.M.' 1 0000-0002-9116-5606 'Egli, M.' 2 0000-0003-4145-356X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 8090 _citation.page_last 8104 _citation.title ;Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky703 _citation.pdbx_database_id_PubMed 30107495 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harp, J.M.' 1 ? primary 'Guenther, D.C.' 2 ? primary 'Bisbe, A.' 3 ? primary 'Perkins, L.' 4 ? primary 'Matsuda, S.' 5 ? primary 'Bommineni, G.R.' 6 ? primary 'Zlatev, I.' 7 ? primary 'Foster, D.J.' 8 ? primary 'Taneja, N.' 9 ? primary 'Charisse, K.' 10 ? primary 'Maier, M.A.' 11 ? primary 'Rajeev, K.G.' 12 ? primary 'Manoharan, M.' 13 ? primary 'Egli, M.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3') ; 2637.474 8 ? ? ? ? 2 water nat water 18.015 175 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CBV)GAA(UFB)UCG' _entity_poly.pdbx_seq_one_letter_code_can CGAAXUCG _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CBV n 1 2 G n 1 3 A n 1 4 A n 1 5 UFB n 1 6 U n 1 7 C n 1 8 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UFB 'RNA linking' . ;2'-F,4'-beta-OMe Uridine 5'-(dihydrogen phosphate) ; ? 'C10 H14 F N2 O9 P' 356.198 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CBV 1 1 1 CBV CBV A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 UFB 5 5 5 UFB UFB A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n B 1 1 CBV 1 1 1 CBV CBV B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 A 4 4 4 A A B . n B 1 5 UFB 5 5 5 UFB UFB B . n B 1 6 U 6 6 6 U U B . n B 1 7 C 7 7 7 C C B . n B 1 8 G 8 8 8 G G B . n C 1 1 CBV 1 1 1 CBV CBV C . n C 1 2 G 2 2 2 G G C . n C 1 3 A 3 3 3 A A C . n C 1 4 A 4 4 4 A A C . n C 1 5 UFB 5 5 5 UFB UFB C . n C 1 6 U 6 6 6 U U C . n C 1 7 C 7 7 7 C C C . n C 1 8 G 8 8 8 G G C . n D 1 1 CBV 1 1 1 CBV CBV D . n D 1 2 G 2 2 2 G G D . n D 1 3 A 3 3 3 A A D . n D 1 4 A 4 4 4 A A D . n D 1 5 UFB 5 5 5 UFB UFB D . n D 1 6 U 6 6 6 U U D . n D 1 7 C 7 7 7 C C D . n D 1 8 G 8 8 8 G G D . n E 1 1 CBV 1 1 1 CBV CBV E . n E 1 2 G 2 2 2 G G E . n E 1 3 A 3 3 3 A A E . n E 1 4 A 4 4 4 A A E . n E 1 5 UFB 5 5 5 UFB UFB E . n E 1 6 U 6 6 6 U U E . n E 1 7 C 7 7 7 C C E . n E 1 8 G 8 8 8 G G E . n F 1 1 CBV 1 1 1 CBV CBV F . n F 1 2 G 2 2 2 G G F . n F 1 3 A 3 3 3 A A F . n F 1 4 A 4 4 4 A A F . n F 1 5 UFB 5 5 5 UFB UFB F . n F 1 6 U 6 6 6 U U F . n F 1 7 C 7 7 7 C C F . n F 1 8 G 8 8 8 G G F . n G 1 1 CBV 1 1 1 CBV CBV G . n G 1 2 G 2 2 2 G G G . n G 1 3 A 3 3 3 A A G . n G 1 4 A 4 4 4 A A G . n G 1 5 UFB 5 5 5 UFB UFB G . n G 1 6 U 6 6 6 U U G . n G 1 7 C 7 7 7 C C G . n G 1 8 G 8 8 8 G G G . n H 1 1 CBV 1 1 1 CBV CBV H . n H 1 2 G 2 2 2 G G H . n H 1 3 A 3 3 3 A A H . n H 1 4 A 4 4 4 A A H . n H 1 5 UFB 5 5 5 UFB UFB H . n H 1 6 U 6 6 6 U U H . n H 1 7 C 7 7 7 C C H . n H 1 8 G 8 8 8 G G H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HOH 1 101 109 HOH HOH A . I 2 HOH 2 102 144 HOH HOH A . I 2 HOH 3 103 44 HOH HOH A . I 2 HOH 4 104 69 HOH HOH A . I 2 HOH 5 105 87 HOH HOH A . I 2 HOH 6 106 89 HOH HOH A . I 2 HOH 7 107 131 HOH HOH A . I 2 HOH 8 108 55 HOH HOH A . I 2 HOH 9 109 106 HOH HOH A . I 2 HOH 10 110 7 HOH HOH A . I 2 HOH 11 111 160 HOH HOH A . I 2 HOH 12 112 161 HOH HOH A . I 2 HOH 13 113 40 HOH HOH A . I 2 HOH 14 114 53 HOH HOH A . I 2 HOH 15 115 58 HOH HOH A . I 2 HOH 16 116 141 HOH HOH A . I 2 HOH 17 117 111 HOH HOH A . I 2 HOH 18 118 119 HOH HOH A . J 2 HOH 1 101 97 HOH HOH B . J 2 HOH 2 102 140 HOH HOH B . J 2 HOH 3 103 48 HOH HOH B . J 2 HOH 4 104 45 HOH HOH B . J 2 HOH 5 105 31 HOH HOH B . J 2 HOH 6 106 64 HOH HOH B . J 2 HOH 7 107 43 HOH HOH B . J 2 HOH 8 108 66 HOH HOH B . J 2 HOH 9 109 75 HOH HOH B . J 2 HOH 10 110 39 HOH HOH B . J 2 HOH 11 111 116 HOH HOH B . J 2 HOH 12 112 135 HOH HOH B . J 2 HOH 13 113 19 HOH HOH B . J 2 HOH 14 114 88 HOH HOH B . J 2 HOH 15 115 90 HOH HOH B . J 2 HOH 16 116 142 HOH HOH B . J 2 HOH 17 117 117 HOH HOH B . J 2 HOH 18 118 102 HOH HOH B . J 2 HOH 19 119 99 HOH HOH B . J 2 HOH 20 120 10 HOH HOH B . J 2 HOH 21 121 113 HOH HOH B . J 2 HOH 22 122 147 HOH HOH B . J 2 HOH 23 123 134 HOH HOH B . K 2 HOH 1 101 130 HOH HOH C . K 2 HOH 2 102 2 HOH HOH C . K 2 HOH 3 103 59 HOH HOH C . K 2 HOH 4 104 80 HOH HOH C . K 2 HOH 5 105 169 HOH HOH C . K 2 HOH 6 106 61 HOH HOH C . K 2 HOH 7 107 1 HOH HOH C . K 2 HOH 8 108 71 HOH HOH C . K 2 HOH 9 109 18 HOH HOH C . K 2 HOH 10 110 174 HOH HOH C . K 2 HOH 11 111 143 HOH HOH C . K 2 HOH 12 112 49 HOH HOH C . K 2 HOH 13 113 175 HOH HOH C . K 2 HOH 14 114 21 HOH HOH C . K 2 HOH 15 115 3 HOH HOH C . K 2 HOH 16 116 12 HOH HOH C . K 2 HOH 17 117 76 HOH HOH C . K 2 HOH 18 118 70 HOH HOH C . K 2 HOH 19 119 15 HOH HOH C . K 2 HOH 20 120 137 HOH HOH C . K 2 HOH 21 121 166 HOH HOH C . K 2 HOH 22 122 157 HOH HOH C . K 2 HOH 23 123 77 HOH HOH C . K 2 HOH 24 124 74 HOH HOH C . K 2 HOH 25 125 149 HOH HOH C . K 2 HOH 26 126 82 HOH HOH C . L 2 HOH 1 101 14 HOH HOH D . L 2 HOH 2 102 38 HOH HOH D . L 2 HOH 3 103 101 HOH HOH D . L 2 HOH 4 104 42 HOH HOH D . L 2 HOH 5 105 78 HOH HOH D . L 2 HOH 6 106 37 HOH HOH D . L 2 HOH 7 107 159 HOH HOH D . L 2 HOH 8 108 152 HOH HOH D . L 2 HOH 9 109 125 HOH HOH D . L 2 HOH 10 110 56 HOH HOH D . L 2 HOH 11 111 4 HOH HOH D . L 2 HOH 12 112 50 HOH HOH D . L 2 HOH 13 113 13 HOH HOH D . L 2 HOH 14 114 29 HOH HOH D . L 2 HOH 15 115 26 HOH HOH D . L 2 HOH 16 116 27 HOH HOH D . L 2 HOH 17 117 36 HOH HOH D . L 2 HOH 18 118 84 HOH HOH D . L 2 HOH 19 119 9 HOH HOH D . L 2 HOH 20 120 164 HOH HOH D . L 2 HOH 21 121 79 HOH HOH D . L 2 HOH 22 122 51 HOH HOH D . L 2 HOH 23 123 73 HOH HOH D . L 2 HOH 24 124 145 HOH HOH D . L 2 HOH 25 125 57 HOH HOH D . L 2 HOH 26 126 98 HOH HOH D . L 2 HOH 27 127 32 HOH HOH D . L 2 HOH 28 128 167 HOH HOH D . L 2 HOH 29 129 92 HOH HOH D . L 2 HOH 30 130 165 HOH HOH D . L 2 HOH 31 131 138 HOH HOH D . M 2 HOH 1 101 62 HOH HOH E . M 2 HOH 2 102 5 HOH HOH E . M 2 HOH 3 103 72 HOH HOH E . M 2 HOH 4 104 171 HOH HOH E . M 2 HOH 5 105 104 HOH HOH E . M 2 HOH 6 106 41 HOH HOH E . M 2 HOH 7 107 28 HOH HOH E . M 2 HOH 8 108 20 HOH HOH E . M 2 HOH 9 109 156 HOH HOH E . M 2 HOH 10 110 168 HOH HOH E . M 2 HOH 11 111 123 HOH HOH E . M 2 HOH 12 112 151 HOH HOH E . M 2 HOH 13 113 67 HOH HOH E . M 2 HOH 14 114 170 HOH HOH E . M 2 HOH 15 115 46 HOH HOH E . M 2 HOH 16 116 107 HOH HOH E . N 2 HOH 1 101 94 HOH HOH F . N 2 HOH 2 102 30 HOH HOH F . N 2 HOH 3 103 122 HOH HOH F . N 2 HOH 4 104 95 HOH HOH F . N 2 HOH 5 105 85 HOH HOH F . N 2 HOH 6 106 121 HOH HOH F . N 2 HOH 7 107 52 HOH HOH F . N 2 HOH 8 108 129 HOH HOH F . N 2 HOH 9 109 33 HOH HOH F . N 2 HOH 10 110 68 HOH HOH F . N 2 HOH 11 111 22 HOH HOH F . N 2 HOH 12 112 108 HOH HOH F . N 2 HOH 13 113 47 HOH HOH F . N 2 HOH 14 114 6 HOH HOH F . N 2 HOH 15 115 148 HOH HOH F . N 2 HOH 16 116 81 HOH HOH F . N 2 HOH 17 117 158 HOH HOH F . N 2 HOH 18 118 162 HOH HOH F . N 2 HOH 19 119 11 HOH HOH F . N 2 HOH 20 120 63 HOH HOH F . N 2 HOH 21 121 105 HOH HOH F . N 2 HOH 22 122 118 HOH HOH F . N 2 HOH 23 123 132 HOH HOH F . N 2 HOH 24 124 173 HOH HOH F . N 2 HOH 25 125 153 HOH HOH F . O 2 HOH 1 101 133 HOH HOH G . O 2 HOH 2 102 86 HOH HOH G . O 2 HOH 3 103 25 HOH HOH G . O 2 HOH 4 104 34 HOH HOH G . O 2 HOH 5 105 60 HOH HOH G . O 2 HOH 6 106 24 HOH HOH G . O 2 HOH 7 107 100 HOH HOH G . O 2 HOH 8 108 96 HOH HOH G . O 2 HOH 9 109 155 HOH HOH G . O 2 HOH 10 110 65 HOH HOH G . O 2 HOH 11 111 124 HOH HOH G . O 2 HOH 12 112 91 HOH HOH G . O 2 HOH 13 113 17 HOH HOH G . O 2 HOH 14 114 23 HOH HOH G . O 2 HOH 15 115 93 HOH HOH G . O 2 HOH 16 116 16 HOH HOH G . O 2 HOH 17 117 35 HOH HOH G . O 2 HOH 18 118 150 HOH HOH G . O 2 HOH 19 119 126 HOH HOH G . P 2 HOH 1 101 163 HOH HOH H . P 2 HOH 2 102 112 HOH HOH H . P 2 HOH 3 103 103 HOH HOH H . P 2 HOH 4 104 110 HOH HOH H . P 2 HOH 5 105 127 HOH HOH H . P 2 HOH 6 106 115 HOH HOH H . P 2 HOH 7 107 139 HOH HOH H . P 2 HOH 8 108 172 HOH HOH H . P 2 HOH 9 109 146 HOH HOH H . P 2 HOH 10 110 114 HOH HOH H . P 2 HOH 11 111 54 HOH HOH H . P 2 HOH 12 112 8 HOH HOH H . P 2 HOH 13 113 128 HOH HOH H . P 2 HOH 14 114 83 HOH HOH H . P 2 HOH 15 115 120 HOH HOH H . P 2 HOH 16 116 154 HOH HOH H . P 2 HOH 17 117 136 HOH HOH H . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2992 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6CY0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.012 _cell.length_a_esd ? _cell.length_b 47.631 _cell.length_b_esd ? _cell.length_c 100.744 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CY0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.5 mM RNA; 100 mM MES, 2.5 M ammonium sulfate, 10 mM magnesium chloride,' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-06-11 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6CY0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.398 _reflns.d_resolution_low 42.602 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9164 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.6 _reflns.pdbx_Rmerge_I_obs 0.198 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.058 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.398 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 907 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.433 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.129 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.995 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 49.340 _refine.B_iso_mean 17.7757 _refine.B_iso_min 2.400 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CY0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3980 _refine.ls_d_res_low 42.6020 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16693 _refine.ls_number_reflns_R_free 855 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.4800 _refine.ls_percent_reflns_R_free 5.1200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2043 _refine.ls_R_factor_R_free 0.2423 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2023 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.930 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.4700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.3980 _refine_hist.d_res_low 42.6020 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 1535 _refine_hist.pdbx_number_residues_total 64 _refine_hist.pdbx_B_iso_mean_solvent 23.71 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1360 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3978 2.5480 2684 . 175 2509 95.0000 . . . 0.2835 0.0000 0.2381 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.5480 2.7447 2804 . 132 2672 98.0000 . . . 0.2852 0.0000 0.2391 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.7447 3.0208 2858 . 119 2739 100.0000 . . . 0.2550 0.0000 0.2478 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.0208 3.4578 2759 . 155 2604 97.0000 . . . 0.2493 0.0000 0.1896 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.4578 4.3557 2816 . 154 2662 99.0000 . . . 0.2034 0.0000 0.1794 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 4.3557 42.6088 2772 . 120 2652 97.0000 . . . 0.2236 0.0000 0.1700 . . . . . . 6 . . . # _struct.entry_id 6CY0 _struct.title ;RNA octamer containing 2'-F, 4'-Cbeta-OMe U. ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CY0 _struct_keywords.text 'RNA, oligonucleotide, modified base' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CY0 _struct_ref.pdbx_db_accession 6CY0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CY0 A 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 2 1 6CY0 B 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 3 1 6CY0 C 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 4 1 6CY0 D 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 5 1 6CY0 E 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 6 1 6CY0 F 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 7 1 6CY0 G 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 8 1 6CY0 H 1 ? 8 ? 6CY0 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CBV 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A CBV 1 A G 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A A 4 "O3'" ? ? ? 1_555 A UFB 5 P ? ? A A 4 A UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale one ? A UFB 5 "O3'" ? ? ? 1_555 A U 6 P ? ? A UFB 5 A U 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale one ? B CBV 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B CBV 1 B G 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale both ? B A 4 "O3'" ? ? ? 1_555 B UFB 5 P ? ? B A 4 B UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale one ? B UFB 5 "O3'" ? ? ? 1_555 B U 6 P ? ? B UFB 5 B U 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale7 covale one ? C CBV 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C CBV 1 C G 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale8 covale both ? C A 4 "O3'" ? ? ? 1_555 C UFB 5 P ? ? C A 4 C UFB 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale9 covale one ? C UFB 5 "O3'" ? ? ? 1_555 C U 6 P ? ? C UFB 5 C U 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale10 covale one ? D CBV 1 "O3'" ? ? ? 1_555 D G 2 P ? ? D CBV 1 D G 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale11 covale both ? D A 4 "O3'" ? ? ? 1_555 D UFB 5 P ? ? D A 4 D UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale12 covale one ? D UFB 5 "O3'" ? ? ? 1_555 D U 6 P ? ? D UFB 5 D U 6 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale13 covale one ? E CBV 1 "O3'" ? ? ? 1_555 E G 2 P ? ? E CBV 1 E G 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale14 covale both ? E A 4 "O3'" ? ? ? 1_555 E UFB 5 P ? ? E A 4 E UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale15 covale one ? E UFB 5 "O3'" ? ? ? 1_555 E U 6 P ? ? E UFB 5 E U 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale16 covale one ? F CBV 1 "O3'" ? ? ? 1_555 F G 2 P ? ? F CBV 1 F G 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale17 covale both ? F A 4 "O3'" ? ? ? 1_555 F UFB 5 P ? ? F A 4 F UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale18 covale one ? F UFB 5 "O3'" ? ? ? 1_555 F U 6 P ? ? F UFB 5 F U 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale19 covale one ? G CBV 1 "O3'" ? ? ? 1_555 G G 2 P ? ? G CBV 1 G G 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale20 covale both ? G A 4 "O3'" ? ? ? 1_555 G UFB 5 P ? ? G A 4 G UFB 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale21 covale one ? G UFB 5 "O3'" ? ? ? 1_555 G U 6 P ? ? G UFB 5 G U 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale22 covale one ? H CBV 1 "O3'" ? ? ? 1_555 H G 2 P ? ? H CBV 1 H G 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale23 covale both ? H A 4 "O3'" ? ? ? 1_555 H UFB 5 P ? ? H A 4 H UFB 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale24 covale one ? H UFB 5 "O3'" ? ? ? 1_555 H U 6 P ? ? H UFB 5 H U 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? A CBV 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CBV 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CBV 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 B CBV 1 N3 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 B CBV 1 O2 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 B CBV 1 N4 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C CBV 1 N3 ? ? ? 1_555 D G 8 N1 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C CBV 1 N4 ? ? ? 1_555 D G 8 O6 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C CBV 1 O2 ? ? ? 1_555 D G 8 N2 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 8 N1 ? ? ? 1_555 D CBV 1 N3 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 8 N2 ? ? ? 1_555 D CBV 1 O2 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 8 O6 ? ? ? 1_555 D CBV 1 N4 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E CBV 1 N3 ? ? ? 1_555 F G 8 N1 ? ? E CBV 1 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E CBV 1 N4 ? ? ? 1_555 F G 8 O6 ? ? E CBV 1 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E CBV 1 O2 ? ? ? 1_555 F G 8 N2 ? ? E CBV 1 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E G 2 N1 ? ? ? 1_555 F C 7 N3 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E G 2 N2 ? ? ? 1_555 F C 7 O2 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E G 2 O6 ? ? ? 1_555 F C 7 N4 ? ? E G 2 F C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E A 3 N1 ? ? ? 1_555 F U 6 N3 ? ? E A 3 F U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E A 3 N6 ? ? ? 1_555 F U 6 O4 ? ? E A 3 F U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E U 6 N3 ? ? ? 1_555 F A 3 N1 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E U 6 O4 ? ? ? 1_555 F A 3 N6 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E C 7 N3 ? ? ? 1_555 F G 2 N1 ? ? E C 7 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E C 7 N4 ? ? ? 1_555 F G 2 O6 ? ? E C 7 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E C 7 O2 ? ? ? 1_555 F G 2 N2 ? ? E C 7 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E G 8 N1 ? ? ? 1_555 F CBV 1 N3 ? ? E G 8 F CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E G 8 N2 ? ? ? 1_555 F CBV 1 O2 ? ? E G 8 F CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E G 8 O6 ? ? ? 1_555 F CBV 1 N4 ? ? E G 8 F CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? G CBV 1 N3 ? ? ? 1_555 H G 8 N1 ? ? G CBV 1 H G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? G CBV 1 N4 ? ? ? 1_555 H G 8 O6 ? ? G CBV 1 H G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? G CBV 1 O2 ? ? ? 1_555 H G 8 N2 ? ? G CBV 1 H G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? G G 2 N1 ? ? ? 1_555 H C 7 N3 ? ? G G 2 H C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? G G 2 N2 ? ? ? 1_555 H C 7 O2 ? ? G G 2 H C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? G G 2 O6 ? ? ? 1_555 H C 7 N4 ? ? G G 2 H C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? G A 3 N1 ? ? ? 1_555 H U 6 N3 ? ? G A 3 H U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? G A 3 N6 ? ? ? 1_555 H U 6 O4 ? ? G A 3 H U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? G U 6 N3 ? ? ? 1_555 H A 3 N1 ? ? G U 6 H A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? G U 6 O4 ? ? ? 1_555 H A 3 N6 ? ? G U 6 H A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? G C 7 N3 ? ? ? 1_555 H G 2 N1 ? ? G C 7 H G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? G C 7 N4 ? ? ? 1_555 H G 2 O6 ? ? G C 7 H G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? G C 7 O2 ? ? ? 1_555 H G 2 N2 ? ? G C 7 H G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? G G 8 N1 ? ? ? 1_555 H CBV 1 N3 ? ? G G 8 H CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? G G 8 N2 ? ? ? 1_555 H CBV 1 O2 ? ? G G 8 H CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? G G 8 O6 ? ? ? 1_555 H CBV 1 N4 ? ? G G 8 H CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id G _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 119 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.12 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CBV O3P O N N 73 CBV P P N N 74 CBV O1P O N N 75 CBV O2P O N N 76 CBV "O5'" O N N 77 CBV "C5'" C N N 78 CBV "C4'" C N R 79 CBV "O4'" O N N 80 CBV "C3'" C N S 81 CBV "O3'" O N N 82 CBV "C2'" C N R 83 CBV "O2'" O N N 84 CBV "C1'" C N R 85 CBV N1 N N N 86 CBV C2 C N N 87 CBV O2 O N N 88 CBV N3 N N N 89 CBV C4 C N N 90 CBV N4 N N N 91 CBV C5 C N N 92 CBV C6 C N N 93 CBV BR BR N N 94 CBV HO3P H N N 95 CBV HO1P H N N 96 CBV "H5'1" H N N 97 CBV "H5'2" H N N 98 CBV "H4'" H N N 99 CBV "H3'" H N N 100 CBV "HO3'" H N N 101 CBV "H2'" H N N 102 CBV "HO2'" H N N 103 CBV "H1'" H N N 104 CBV HN41 H N N 105 CBV HN42 H N N 106 CBV H6 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 UFB "C1'" C N R 183 UFB C2 C N N 184 UFB "C2'" C N R 185 UFB "C3'" C N R 186 UFB C4 C N N 187 UFB "C4'" C N S 188 UFB C5 C N N 189 UFB "C5'" C N N 190 UFB C6 C N N 191 UFB CM C N N 192 UFB "F2'" F N N 193 UFB N1 N N N 194 UFB N3 N N N 195 UFB O2 O N N 196 UFB "O3'" O N N 197 UFB O4 O N N 198 UFB "O4'" O N N 199 UFB "O5'" O N N 200 UFB OM O N N 201 UFB OP1 O N N 202 UFB OP2 O N N 203 UFB P P N N 204 UFB OP3 O N N 205 UFB "H1'" H N N 206 UFB "H2'" H N N 207 UFB "H3'" H N N 208 UFB H5 H N N 209 UFB "H5'" H N N 210 UFB H5S H N N 211 UFB H6 H N N 212 UFB HM3 H N N 213 UFB HM1 H N N 214 UFB HM2 H N N 215 UFB H3 H N N 216 UFB H1 H N N 217 UFB H2 H N N 218 UFB HOP3 H N N 219 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBV O3P P sing N N 76 CBV O3P HO3P sing N N 77 CBV P O1P sing N N 78 CBV P O2P doub N N 79 CBV P "O5'" sing N N 80 CBV O1P HO1P sing N N 81 CBV "O5'" "C5'" sing N N 82 CBV "C5'" "C4'" sing N N 83 CBV "C5'" "H5'1" sing N N 84 CBV "C5'" "H5'2" sing N N 85 CBV "C4'" "O4'" sing N N 86 CBV "C4'" "C3'" sing N N 87 CBV "C4'" "H4'" sing N N 88 CBV "O4'" "C1'" sing N N 89 CBV "C3'" "O3'" sing N N 90 CBV "C3'" "C2'" sing N N 91 CBV "C3'" "H3'" sing N N 92 CBV "O3'" "HO3'" sing N N 93 CBV "C2'" "O2'" sing N N 94 CBV "C2'" "C1'" sing N N 95 CBV "C2'" "H2'" sing N N 96 CBV "O2'" "HO2'" sing N N 97 CBV "C1'" N1 sing N N 98 CBV "C1'" "H1'" sing N N 99 CBV N1 C2 sing N N 100 CBV N1 C6 sing N N 101 CBV C2 O2 doub N N 102 CBV C2 N3 sing N N 103 CBV N3 C4 doub N N 104 CBV C4 N4 sing N N 105 CBV C4 C5 sing N N 106 CBV N4 HN41 sing N N 107 CBV N4 HN42 sing N N 108 CBV C5 C6 doub N N 109 CBV C5 BR sing N N 110 CBV C6 H6 sing N N 111 G OP3 P sing N N 112 G OP3 HOP3 sing N N 113 G P OP1 doub N N 114 G P OP2 sing N N 115 G P "O5'" sing N N 116 G OP2 HOP2 sing N N 117 G "O5'" "C5'" sing N N 118 G "C5'" "C4'" sing N N 119 G "C5'" "H5'" sing N N 120 G "C5'" "H5''" sing N N 121 G "C4'" "O4'" sing N N 122 G "C4'" "C3'" sing N N 123 G "C4'" "H4'" sing N N 124 G "O4'" "C1'" sing N N 125 G "C3'" "O3'" sing N N 126 G "C3'" "C2'" sing N N 127 G "C3'" "H3'" sing N N 128 G "O3'" "HO3'" sing N N 129 G "C2'" "O2'" sing N N 130 G "C2'" "C1'" sing N N 131 G "C2'" "H2'" sing N N 132 G "O2'" "HO2'" sing N N 133 G "C1'" N9 sing N N 134 G "C1'" "H1'" sing N N 135 G N9 C8 sing Y N 136 G N9 C4 sing Y N 137 G C8 N7 doub Y N 138 G C8 H8 sing N N 139 G N7 C5 sing Y N 140 G C5 C6 sing N N 141 G C5 C4 doub Y N 142 G C6 O6 doub N N 143 G C6 N1 sing N N 144 G N1 C2 sing N N 145 G N1 H1 sing N N 146 G C2 N2 sing N N 147 G C2 N3 doub N N 148 G N2 H21 sing N N 149 G N2 H22 sing N N 150 G N3 C4 sing N N 151 HOH O H1 sing N N 152 HOH O H2 sing N N 153 U OP3 P sing N N 154 U OP3 HOP3 sing N N 155 U P OP1 doub N N 156 U P OP2 sing N N 157 U P "O5'" sing N N 158 U OP2 HOP2 sing N N 159 U "O5'" "C5'" sing N N 160 U "C5'" "C4'" sing N N 161 U "C5'" "H5'" sing N N 162 U "C5'" "H5''" sing N N 163 U "C4'" "O4'" sing N N 164 U "C4'" "C3'" sing N N 165 U "C4'" "H4'" sing N N 166 U "O4'" "C1'" sing N N 167 U "C3'" "O3'" sing N N 168 U "C3'" "C2'" sing N N 169 U "C3'" "H3'" sing N N 170 U "O3'" "HO3'" sing N N 171 U "C2'" "O2'" sing N N 172 U "C2'" "C1'" sing N N 173 U "C2'" "H2'" sing N N 174 U "O2'" "HO2'" sing N N 175 U "C1'" N1 sing N N 176 U "C1'" "H1'" sing N N 177 U N1 C2 sing N N 178 U N1 C6 sing N N 179 U C2 O2 doub N N 180 U C2 N3 sing N N 181 U N3 C4 sing N N 182 U N3 H3 sing N N 183 U C4 O4 doub N N 184 U C4 C5 sing N N 185 U C5 C6 doub N N 186 U C5 H5 sing N N 187 U C6 H6 sing N N 188 UFB CM OM sing N N 189 UFB OM "C4'" sing N N 190 UFB OP2 P doub N N 191 UFB "C5'" "C4'" sing N N 192 UFB "C5'" "O5'" sing N N 193 UFB "C4'" "O4'" sing N N 194 UFB "C4'" "C3'" sing N N 195 UFB C5 C6 doub N N 196 UFB C5 C4 sing N N 197 UFB C6 N1 sing N N 198 UFB "O4'" "C1'" sing N N 199 UFB P "O5'" sing N N 200 UFB P OP1 sing N N 201 UFB O4 C4 doub N N 202 UFB C4 N3 sing N N 203 UFB "C3'" "O3'" sing N N 204 UFB "C3'" "C2'" sing N N 205 UFB N1 "C1'" sing N N 206 UFB N1 C2 sing N N 207 UFB "C1'" "C2'" sing N N 208 UFB "C2'" "F2'" sing N N 209 UFB N3 C2 sing N N 210 UFB C2 O2 doub N N 211 UFB P OP3 sing N N 212 UFB "C1'" "H1'" sing N N 213 UFB "C2'" "H2'" sing N N 214 UFB "C3'" "H3'" sing N N 215 UFB C5 H5 sing N N 216 UFB "C5'" "H5'" sing N N 217 UFB "C5'" H5S sing N N 218 UFB C6 H6 sing N N 219 UFB CM HM3 sing N N 220 UFB CM HM1 sing N N 221 UFB CM HM2 sing N N 222 UFB N3 H3 sing N N 223 UFB "O3'" H1 sing N N 224 UFB OP1 H2 sing N N 225 UFB OP3 HOP3 sing N N 226 # _ndb_struct_conf_na.entry_id 6CY0 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B U 6 1_555 A A 3 1_555 -0.234 -0.221 0.442 -6.079 -18.933 -2.967 1 B_U6:A3_A B 6 ? A 3 ? 20 1 1 B C 7 1_555 A G 2 1_555 -0.006 -0.239 0.057 -8.392 -6.887 0.542 2 B_C7:G2_A B 7 ? A 2 ? 19 1 1 D CBV 1 1_555 C G 8 1_555 0.167 0.029 0.326 -9.746 -4.561 2.401 3 D_CBV1:G8_C D 1 ? C 8 ? 19 1 1 B G 8 1_555 A CBV 1 1_555 0.010 -0.005 0.442 13.775 -2.678 0.010 4 B_G8:CBV1_A B 8 ? A 1 ? 19 1 1 D G 2 1_555 C C 7 1_555 -0.003 -0.089 0.307 13.094 -5.142 1.390 5 D_G2:C7_C D 2 ? C 7 ? 19 1 1 D A 3 1_555 C U 6 1_555 0.163 -0.095 0.373 2.558 -23.261 -4.154 6 D_A3:U6_C D 3 ? C 6 ? 20 1 1 A U 6 1_555 B A 3 1_555 -0.054 -0.128 0.391 -2.876 -18.245 -1.290 7 A_U6:A3_B A 6 ? B 3 ? 20 1 1 A C 7 1_555 B G 2 1_555 0.013 -0.257 -0.007 -7.386 -5.811 0.668 8 A_C7:G2_B A 7 ? B 2 ? 19 1 1 A G 8 1_555 B CBV 1 1_555 -0.062 0.091 0.280 12.995 -2.802 2.533 9 A_G8:CBV1_B A 8 ? B 1 ? 19 1 1 C CBV 1 1_555 D G 8 1_555 0.158 0.025 0.214 -8.361 -1.353 0.804 10 C_CBV1:G8_D C 1 ? D 8 ? 19 1 1 C G 2 1_555 D C 7 1_555 -0.177 -0.182 0.029 13.733 -3.013 2.599 11 C_G2:C7_D C 2 ? D 7 ? 19 1 1 C A 3 1_555 D U 6 1_555 0.180 -0.194 0.306 7.866 -16.570 -4.476 12 C_A3:U6_D C 3 ? D 6 ? 20 1 1 E CBV 1 1_555 F G 8 1_555 -0.037 0.061 0.258 -10.936 -2.093 1.307 13 E_CBV1:G8_F E 1 ? F 8 ? 19 1 1 E G 2 1_555 F C 7 1_555 -0.156 -0.208 0.223 13.298 -3.817 2.942 14 E_G2:C7_F E 2 ? F 7 ? 19 1 1 E A 3 1_555 F U 6 1_555 0.109 -0.131 0.308 6.692 -15.406 -2.436 15 E_A3:U6_F E 3 ? F 6 ? 20 1 1 E U 6 1_555 F A 3 1_555 0.044 -0.158 0.369 -2.016 -18.679 -4.926 16 E_U6:A3_F E 6 ? F 3 ? 20 1 1 E C 7 1_555 F G 2 1_555 -0.003 -0.142 0.216 -12.655 -4.004 2.443 17 E_C7:G2_F E 7 ? F 2 ? 19 1 1 E G 8 1_555 F CBV 1 1_555 -0.118 0.084 0.349 12.165 -1.526 2.567 18 E_G8:CBV1_F E 8 ? F 1 ? 19 1 1 G CBV 1 1_555 H G 8 1_555 0.085 0.048 0.060 -6.355 -2.924 1.809 19 G_CBV1:G8_H G 1 ? H 8 ? 19 1 1 G G 2 1_555 H C 7 1_555 0.008 -0.088 0.306 13.790 -5.523 0.300 20 G_G2:C7_H G 2 ? H 7 ? 19 1 1 G A 3 1_555 H U 6 1_555 0.018 -0.133 0.552 6.326 -21.733 -2.129 21 G_A3:U6_H G 3 ? H 6 ? 20 1 1 G U 6 1_555 H A 3 1_555 -0.003 -0.023 0.339 -2.891 -24.584 -0.689 22 G_U6:A3_H G 6 ? H 3 ? 20 1 1 G C 7 1_555 H G 2 1_555 0.020 -0.091 0.065 -9.264 -8.479 3.076 23 G_C7:G2_H G 7 ? H 2 ? 19 1 1 G G 8 1_555 H CBV 1 1_555 -0.243 0.041 0.299 12.955 -2.587 0.033 24 G_G8:CBV1_H G 8 ? H 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B U 6 1_555 A A 3 1_555 B C 7 1_555 A G 2 1_555 0.091 -0.901 3.275 6.419 -1.126 33.059 -1.371 0.897 3.262 -1.955 -11.145 33.678 1 BB_U6C7:G2A3_AA B 6 ? A 3 ? B 7 ? A 2 ? 1 B C 7 1_555 A G 2 1_555 D CBV 1 1_555 C G 8 1_555 0.570 -0.765 3.306 4.248 5.514 36.307 -1.954 -0.325 3.204 8.750 -6.742 36.946 2 BD_C7CBV1:G8G2_CA B 7 ? A 2 ? D 1 ? C 8 ? 1 D CBV 1 1_555 C G 8 1_555 B G 8 1_555 A CBV 1 1_555 -0.090 -0.015 2.656 -1.000 3.368 -27.985 -0.607 -0.374 2.635 -6.929 -2.057 -28.200 3 DB_CBV1G8:CBV1G8_AC D 1 ? C 8 ? B 8 ? A 1 ? 1 B G 8 1_555 A CBV 1 1_555 D G 2 1_555 C C 7 1_555 -0.485 -0.839 3.256 -4.272 2.433 36.254 -1.671 0.187 3.229 3.888 6.827 36.574 4 BD_G8G2:C7CBV1_CA B 8 ? A 1 ? D 2 ? C 7 ? 1 D G 2 1_555 C C 7 1_555 D A 3 1_555 C U 6 1_555 -0.352 -0.850 3.471 -4.609 2.446 33.056 -1.904 -0.195 3.418 4.266 8.038 33.453 5 DD_G2A3:U6C7_CC D 2 ? C 7 ? D 3 ? C 6 ? 1 A U 6 1_555 B A 3 1_555 A C 7 1_555 B G 2 1_555 0.206 -0.766 3.344 6.742 0.379 32.171 -1.421 0.823 3.309 0.675 -12.002 32.854 6 AA_U6C7:G2A3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A C 7 1_555 B G 2 1_555 A G 8 1_555 B CBV 1 1_555 0.910 -0.782 6.009 1.973 8.844 8.073 -23.530 0.115 3.582 47.223 -10.533 12.130 7 AA_C7G8:CBV1G2_BB A 7 ? B 2 ? A 8 ? B 1 ? 1 C CBV 1 1_555 D G 8 1_555 C G 2 1_555 D C 7 1_555 -0.628 -0.875 5.944 -3.150 7.206 5.868 -29.447 -6.963 3.117 48.865 21.358 9.810 8 CC_CBV1G2:C7G8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C G 2 1_555 D C 7 1_555 C A 3 1_555 D U 6 1_555 -0.728 -0.981 3.358 -7.223 0.659 34.371 -1.730 0.076 3.417 1.101 12.056 35.105 9 CC_G2A3:U6C7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 E CBV 1 1_555 F G 8 1_555 E G 2 1_555 F C 7 1_555 -0.420 -1.040 5.968 -3.682 5.192 8.451 -20.973 -8.591 4.407 30.216 21.425 10.576 10 EE_CBV1G2:C7G8_FF E 1 ? F 8 ? E 2 ? F 7 ? 1 E G 2 1_555 F C 7 1_555 E A 3 1_555 F U 6 1_555 -0.638 -1.039 3.296 -5.589 1.776 34.921 -1.974 0.215 3.300 2.934 9.232 35.395 11 EE_G2A3:U6C7_FF E 2 ? F 7 ? E 3 ? F 6 ? 1 E U 6 1_555 F A 3 1_555 E C 7 1_555 F G 2 1_555 0.701 -1.008 3.472 5.926 1.482 34.429 -1.919 -0.206 3.495 2.479 -9.915 34.950 12 EE_U6C7:G2A3_FF E 6 ? F 3 ? E 7 ? F 2 ? 1 E C 7 1_555 F G 2 1_555 E G 8 1_555 F CBV 1 1_555 0.698 -0.876 5.884 2.720 6.253 9.492 -19.296 3.092 4.478 32.788 -14.261 11.683 13 EE_C7G8:CBV1G2_FF E 7 ? F 2 ? E 8 ? F 1 ? 1 G CBV 1 1_555 H G 8 1_555 G G 2 1_555 H C 7 1_555 -0.728 -0.714 6.045 -4.383 7.576 9.056 -19.535 -6.097 4.177 38.181 22.090 12.588 14 GG_CBV1G2:C7G8_HH G 1 ? H 8 ? G 2 ? H 7 ? 1 G G 2 1_555 H C 7 1_555 G A 3 1_555 H U 6 1_555 -0.277 -0.890 3.346 -5.915 0.650 32.520 -1.677 -0.542 3.325 1.148 10.453 33.045 15 GG_G2A3:U6C7_HH G 2 ? H 7 ? G 3 ? H 6 ? 1 G U 6 1_555 H A 3 1_555 G C 7 1_555 H G 2 1_555 0.246 -0.777 3.408 5.266 1.019 32.238 -1.567 0.515 3.380 1.819 -9.401 32.669 16 GG_U6C7:G2A3_HH G 6 ? H 3 ? G 7 ? H 2 ? 1 G C 7 1_555 H G 2 1_555 G G 8 1_555 H CBV 1 1_555 0.562 -0.669 5.985 1.602 8.574 7.545 -24.525 1.162 3.502 48.380 -9.041 11.528 17 GG_C7G8:CBV1G2_HH G 7 ? H 2 ? G 8 ? H 1 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id UFB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id UFB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6CY0 _atom_sites.fract_transf_matrix[1][1] 0.021273 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021001 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009927 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C F H N O P # loop_