HEADER TRANSFERASE 04-APR-18 6CY6 TITLE CRYSTAL STRUCTURE OF SPERMIDINE/SPERMINE N-ACETYLTRANSFERASE SPEG FROM TITLE 2 ESCHERICHIA COLI IN COMPLEX WITH TRIS(HYDROXYMETHYL)AMINOMETHANE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE N(1)-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SAT,SPERMIDINE/SPERMINE N(1)-ACETYLTRANSFERASE,SSAT; COMPND 5 EC: 2.3.1.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: SPEG, B1584, JW1576; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS SPEG, SPERMIDINE, GNAT, N-ACETYLTRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,O.KIRYUKHINA,W.F.ANDERSON,K.J.F.SATCHELL, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 04-OCT-23 6CY6 1 LINK REVDAT 3 03-JUL-19 6CY6 1 JRNL REVDAT 2 26-JUN-19 6CY6 1 JRNL REVDAT 1 18-APR-18 6CY6 0 JRNL AUTH E.V.FILIPPOVA,S.WEIGAND,O.KIRYUKHINA,A.J.WOLFE,W.F.ANDERSON JRNL TITL ANALYSIS OF CRYSTALLINE AND SOLUTION STATES OF LIGAND-FREE JRNL TITL 2 SPERMIDINE N-ACETYLTRANSFERASE (SPEG) FROM ESCHERICHIA COLI. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 545 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31205017 JRNL DOI 10.1107/S2059798319006545 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1576 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1573 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1469 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2133 ; 2.098 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3381 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 4.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.246 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;11.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1736 ; 0.025 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 711 ; 2.237 ; 2.035 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 709 ; 2.225 ; 2.026 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 898 ; 3.148 ; 3.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 899 ; 3.146 ; 3.034 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 862 ; 4.317 ; 2.737 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 859 ; 4.280 ; 2.724 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1230 ; 6.204 ; 3.909 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1715 ; 7.607 ;25.402 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1702 ; 7.526 ;25.120 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 69.3442 73.6743 75.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0377 REMARK 3 T33: 0.0180 T12: -0.0227 REMARK 3 T13: -0.0145 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 4.4601 L22: 1.9214 REMARK 3 L33: 1.2716 L12: -1.1069 REMARK 3 L13: 0.0244 L23: 0.4549 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.2886 S13: 0.0823 REMARK 3 S21: -0.2386 S22: -0.0184 S23: 0.1021 REMARK 3 S31: 0.0522 S32: -0.0716 S33: 0.0180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3999 65.3273 86.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0293 REMARK 3 T33: 0.1147 T12: 0.0069 REMARK 3 T13: 0.0008 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.2768 L22: 0.8942 REMARK 3 L33: 0.6119 L12: -1.5448 REMARK 3 L13: 1.0294 L23: -0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: -0.0758 S13: -0.3316 REMARK 3 S21: 0.0137 S22: 0.0235 S23: 0.2149 REMARK 3 S31: -0.0197 S32: -0.0247 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 75.0262 67.4651 83.4306 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0353 REMARK 3 T33: 0.0233 T12: -0.0002 REMARK 3 T13: -0.0156 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.1472 L22: 0.7625 REMARK 3 L33: 0.4026 L12: 0.1225 REMARK 3 L13: 0.1371 L23: -0.2859 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.0892 S13: -0.0342 REMARK 3 S21: -0.1102 S22: 0.0433 S23: 0.0084 REMARK 3 S31: 0.0924 S32: 0.0317 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 73.2337 52.7623 88.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.0234 REMARK 3 T33: 0.0666 T12: 0.0296 REMARK 3 T13: -0.0115 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.8350 L22: 0.7564 REMARK 3 L33: 0.5740 L12: 1.0702 REMARK 3 L13: -0.9019 L23: -0.3548 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.0736 S13: -0.4012 REMARK 3 S21: -0.0570 S22: 0.0119 S23: -0.1421 REMARK 3 S31: -0.0190 S32: -0.0626 S33: 0.0705 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 91.4095 63.5089 88.0334 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.1106 REMARK 3 T33: 0.2937 T12: 0.0483 REMARK 3 T13: -0.0081 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.1502 L22: 3.8788 REMARK 3 L33: 1.8917 L12: -1.5897 REMARK 3 L13: 0.7276 L23: -2.1207 REMARK 3 S TENSOR REMARK 3 S11: 0.1538 S12: 0.2428 S13: -0.1749 REMARK 3 S21: -0.1305 S22: -0.2491 S23: -0.5750 REMARK 3 S31: 0.1072 S32: 0.2427 S33: 0.0953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE MONOBASIC, REMARK 280 0.1 M TRIS, 50% V/V MPD, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 75860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1536.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 161.24850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 93.09686 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 186.19373 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 107.49900 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 186.19373 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 -53.74950 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 93.09686 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 107.49900 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 7 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 195.06300 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 186.19373 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 195.06300 REMARK 350 BIOMT1 9 -0.500000 -0.866025 0.000000 161.24850 REMARK 350 BIOMT2 9 -0.866025 0.500000 0.000000 93.09686 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 195.06300 REMARK 350 BIOMT1 10 0.500000 -0.866025 0.000000 107.49900 REMARK 350 BIOMT2 10 -0.866025 -0.500000 0.000000 186.19373 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 195.06300 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 107.49900 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 195.06300 REMARK 350 BIOMT1 12 0.500000 0.866025 0.000000 -53.74950 REMARK 350 BIOMT2 12 0.866025 -0.500000 0.000000 93.09686 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 195.06300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 174 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 GLY A 177 REMARK 465 GLN A 178 REMARK 465 THR A 179 REMARK 465 LEU A 180 REMARK 465 LEU A 181 REMARK 465 LYS A 182 REMARK 465 PRO A 183 REMARK 465 THR A 184 REMARK 465 ALA A 185 REMARK 465 GLN A 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 39 CD GLU A 39 OE2 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE1 REMARK 620 2 ASP A 54 O 88.3 REMARK 620 3 GLU A 57 O 84.8 7.7 REMARK 620 4 HOH A 321 O 93.1 8.0 8.3 REMARK 620 5 HOH A 365 O 93.3 6.0 9.2 3.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 216 DBREF 6CY6 A 1 186 UNP P0A951 ATDA_ECOLI 1 186 SEQRES 1 A 186 MET PRO SER ALA HIS SER VAL LYS LEU ARG PRO LEU GLU SEQRES 2 A 186 ARG GLU ASP LEU ARG TYR VAL HIS GLN LEU ASP ASN ASN SEQRES 3 A 186 ALA SER VAL MET ARG TYR TRP PHE GLU GLU PRO TYR GLU SEQRES 4 A 186 ALA PHE VAL GLU LEU SER ASP LEU TYR ASP LYS HIS ILE SEQRES 5 A 186 HIS ASP GLN SER GLU ARG ARG PHE VAL VAL GLU CYS ASP SEQRES 6 A 186 GLY GLU LYS ALA GLY LEU VAL GLU LEU VAL GLU ILE ASN SEQRES 7 A 186 HIS VAL HIS ARG ARG ALA GLU PHE GLN ILE ILE ILE SER SEQRES 8 A 186 PRO GLU TYR GLN GLY LYS GLY LEU ALA THR ARG ALA ALA SEQRES 9 A 186 LYS LEU ALA MET ASP TYR GLY PHE THR VAL LEU ASN LEU SEQRES 10 A 186 TYR LYS LEU TYR LEU ILE VAL ASP LYS GLU ASN GLU LYS SEQRES 11 A 186 ALA ILE HIS ILE TYR ARG LYS LEU GLY PHE SER VAL GLU SEQRES 12 A 186 GLY GLU LEU MET HIS GLU PHE PHE ILE ASN GLY GLN TYR SEQRES 13 A 186 ARG ASN ALA ILE ARG MET CYS ILE PHE GLN HIS GLN TYR SEQRES 14 A 186 LEU ALA GLU HIS LYS THR PRO GLY GLN THR LEU LEU LYS SEQRES 15 A 186 PRO THR ALA GLN HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET CL A 207 1 HET CL A 208 1 HET NA A 209 1 HET TRS A 210 8 HET MRD A 211 8 HET MPD A 212 8 HET MRD A 213 8 HET MPD A 214 8 HET MPD A 215 8 HET MPD A 216 8 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TRS TRIS BUFFER FORMUL 2 CL 8(CL 1-) FORMUL 10 NA NA 1+ FORMUL 11 TRS C4 H12 N O3 1+ FORMUL 12 MRD 2(C6 H14 O2) FORMUL 13 MPD 4(C6 H14 O2) FORMUL 18 HOH *105(H2 O) HELIX 1 AA1 GLU A 13 GLU A 15 5 3 HELIX 2 AA2 ASP A 16 LEU A 23 1 8 HELIX 3 AA3 ASN A 25 MET A 30 5 6 HELIX 4 AA4 ALA A 40 HIS A 51 1 12 HELIX 5 AA5 PRO A 92 GLN A 95 5 4 HELIX 6 AA6 GLY A 98 VAL A 114 1 17 HELIX 7 AA7 ASN A 128 LEU A 138 1 11 HELIX 8 AA8 GLN A 166 HIS A 173 1 8 SHEET 1 AA1 7 VAL A 7 PRO A 11 0 SHEET 2 AA1 7 ARG A 58 CYS A 64 -1 O GLU A 63 N LYS A 8 SHEET 3 AA1 7 GLU A 67 ASN A 78 -1 O ALA A 69 N VAL A 62 SHEET 4 AA1 7 ARG A 83 ILE A 90 -1 O GLU A 85 N VAL A 75 SHEET 5 AA1 7 LYS A 119 ASP A 125 1 O TYR A 121 N PHE A 86 SHEET 6 AA1 7 GLN A 155 PHE A 165 -1 O ILE A 160 N VAL A 124 SHEET 7 AA1 7 SER A 141 ILE A 152 -1 N LEU A 146 O ALA A 159 LINK OE1 GLU A 36 NA NA A 209 1555 5565 2.74 LINK O ASP A 54 NA NA A 209 1555 1555 2.33 LINK O GLU A 57 NA NA A 209 1555 1555 2.28 LINK NA NA A 209 O HOH A 321 1555 6655 2.37 LINK NA NA A 209 O HOH A 365 1555 1555 2.34 SITE 1 AC1 4 GLU A 15 ARG A 18 HOH A 332 HOH A 404 SITE 1 AC2 5 MET A 30 ARG A 31 TYR A 32 ARG A 59 SITE 2 AC2 5 HOH A 333 SITE 1 AC3 2 ASP A 125 ASN A 128 SITE 1 AC4 2 ARG A 31 MPD A 212 SITE 1 AC5 2 ARG A 14 SER A 45 SITE 1 AC6 3 LYS A 126 ARG A 136 VAL A 142 SITE 1 AC7 1 TYR A 156 SITE 1 AC8 2 ARG A 14 HOH A 404 SITE 1 AC9 6 GLU A 36 ASP A 54 GLU A 57 ARG A 58 SITE 2 AC9 6 HOH A 321 HOH A 365 SITE 1 AD1 7 TYR A 32 TRP A 33 ASP A 54 SER A 56 SITE 2 AD1 7 GLU A 57 GLU A 76 HOH A 302 SITE 1 AD2 6 LEU A 12 HIS A 51 GLU A 57 ARG A 58 SITE 2 AD2 6 ARG A 59 HOH A 321 SITE 1 AD3 1 CL A 204 SITE 1 AD4 1 ASN A 128 SITE 1 AD5 4 TYR A 32 ILE A 123 LEU A 146 GLU A 149 SITE 1 AD6 4 LYS A 126 GLU A 143 GLU A 145 ILE A 160 SITE 1 AD7 4 ILE A 123 ASP A 125 PHE A 150 ILE A 152 CRYST1 107.499 107.499 65.021 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009302 0.005371 0.000000 0.00000 SCALE2 0.000000 0.010742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015380 0.00000