HEADER HYDROLASE/HYDROLASE INHIBITOR 05-APR-18 6CYD TITLE PDE2 IN COMPLEX WITH COMPOUND 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT 3',5'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLIC GMP-STIMULATED PHOSPHODIESTERASE,CGSPDE; COMPND 5 EC: 3.1.4.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE2A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PDE2, INHIBITION, STRUCTURE-GUIDED DESIGN, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LU REVDAT 2 06-MAR-24 6CYD 1 REMARK LINK REVDAT 1 19-SEP-18 6CYD 0 JRNL AUTH S.J.STACHEL,R.BERGER,A.B.NOMLAND,A.T.GINNETTI,D.V.PAONE, JRNL AUTH 2 D.WANG,V.PURI,H.LANGE,J.DROTT,J.LU,J.MARCUS,M.P.DWYER, JRNL AUTH 3 S.SUON,J.M.USLANER,S.M.SMITH JRNL TITL STRUCTURE-GUIDED DESIGN AND PROCOGNITIVE ASSESSMENT OF A JRNL TITL 2 POTENT AND SELECTIVE PHOSPHODIESTERASE 2A INHIBITOR. JRNL REF ACS MED CHEM LETT V. 9 815 2018 JRNL REFN ISSN 1948-5875 JRNL PMID 30128073 JRNL DOI 10.1021/ACSMEDCHEMLETT.8B00214 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5581 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2076 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5287 REMARK 3 BIN R VALUE (WORKING SET) : 0.2059 REMARK 3 BIN FREE R VALUE : 0.2384 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.04100 REMARK 3 B22 (A**2) : -5.49800 REMARK 3 B33 (A**2) : -1.54290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.106 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.100 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.099 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5812 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7874 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2009 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 896 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5812 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 752 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7355 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77189 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 45.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 0.1M HEPES PH7.5, 1MM REMARK 280 TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.97000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.97000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 GLU A 554 REMARK 465 ASN A 555 REMARK 465 LEU A 556 REMARK 465 TYR A 557 REMARK 465 PHE A 558 REMARK 465 GLN A 559 REMARK 465 GLY A 560 REMARK 465 GLU A 561 REMARK 465 LEU A 562 REMARK 465 SER A 563 REMARK 465 THR A 564 REMARK 465 ASP A 573 REMARK 465 ASP A 574 REMARK 465 ASP A 575 REMARK 465 ASP A 576 REMARK 465 LYS A 577 REMARK 465 SER A 578 REMARK 465 ASP A 579 REMARK 465 ASP A 580 REMARK 465 GLU A 581 REMARK 465 ASP A 917 REMARK 465 GLU A 918 REMARK 465 GLU A 919 REMARK 465 MET B 547 REMARK 465 HIS B 548 REMARK 465 HIS B 549 REMARK 465 HIS B 550 REMARK 465 HIS B 551 REMARK 465 HIS B 552 REMARK 465 HIS B 553 REMARK 465 GLU B 554 REMARK 465 ASN B 555 REMARK 465 LEU B 556 REMARK 465 TYR B 557 REMARK 465 PHE B 558 REMARK 465 GLN B 559 REMARK 465 GLY B 560 REMARK 465 GLU B 561 REMARK 465 ASP B 574 REMARK 465 ASP B 575 REMARK 465 ASP B 576 REMARK 465 LYS B 577 REMARK 465 SER B 578 REMARK 465 ASP B 579 REMARK 465 ASP B 580 REMARK 465 ASP B 917 REMARK 465 GLU B 918 REMARK 465 GLU B 919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 LYS A 584 CG CD CE NZ REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 HIS A 587 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 588 CG OD1 OD2 REMARK 470 ARG A 751 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 752 CG CD CE NZ REMARK 470 LYS A 778 CG CD CE NZ REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 ARG A 790 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 470 LYS A 897 CG CD CE NZ REMARK 470 HIS A 900 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 901 CG CD CE NZ REMARK 470 LEU B 562 CG CD1 CD2 REMARK 470 GLU B 581 CG CD OE1 OE2 REMARK 470 THR B 583 OG1 CG2 REMARK 470 LYS B 584 CG CD CE NZ REMARK 470 HIS B 748 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 778 CG CD CE NZ REMARK 470 LYS B 782 CG CD CE NZ REMARK 470 LYS B 793 CG CD CE NZ REMARK 470 ARG B 843 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 857 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 588 37.67 -151.24 REMARK 500 ILE A 866 -64.09 -106.27 REMARK 500 SER A 899 22.65 -66.64 REMARK 500 HIS A 900 -39.80 -131.97 REMARK 500 PHE A 915 13.96 -66.66 REMARK 500 LYS B 901 34.45 -154.98 REMARK 500 ASN B 911 16.57 57.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 660 NE2 REMARK 620 2 HIS A 696 NE2 99.3 REMARK 620 3 ASP A 697 OD2 88.1 91.5 REMARK 620 4 ASP A 808 OD1 98.8 87.2 173.1 REMARK 620 5 HOH A1101 O 162.5 97.4 86.4 87.1 REMARK 620 6 HOH A1218 O 95.7 163.6 95.6 84.0 68.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 697 OD1 REMARK 620 2 HOH A1101 O 96.9 REMARK 620 3 HOH A1106 O 84.0 94.3 REMARK 620 4 HOH A1138 O 89.0 171.1 92.8 REMARK 620 5 HOH A1175 O 169.0 90.0 86.9 85.2 REMARK 620 6 HOH A1223 O 99.7 86.2 176.2 86.3 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 660 NE2 REMARK 620 2 HIS B 696 NE2 98.2 REMARK 620 3 ASP B 697 OD2 89.4 87.5 REMARK 620 4 ASP B 808 OD1 98.4 92.1 172.2 REMARK 620 5 HOH B1102 O 162.1 98.5 85.0 87.3 REMARK 620 6 HOH B1186 O 91.5 169.8 95.8 83.3 72.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 697 OD1 REMARK 620 2 HOH B1102 O 91.5 REMARK 620 3 HOH B1103 O 79.3 91.2 REMARK 620 4 HOH B1113 O 89.8 175.7 93.1 REMARK 620 5 HOH B1135 O 165.0 92.8 86.2 86.9 REMARK 620 6 HOH B1239 O 102.7 86.4 176.9 89.2 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FKG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FKG B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1004 DBREF 6CYD A 578 919 UNP O00408 PDE2A_HUMAN 322 663 DBREF 6CYD B 578 919 UNP O00408 PDE2A_HUMAN 322 663 SEQADV 6CYD MET A 547 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 548 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 549 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 550 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 551 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 552 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS A 553 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLU A 554 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASN A 555 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU A 556 UNP O00408 EXPRESSION TAG SEQADV 6CYD TYR A 557 UNP O00408 EXPRESSION TAG SEQADV 6CYD PHE A 558 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLN A 559 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLY A 560 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLU A 561 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU A 562 UNP O00408 EXPRESSION TAG SEQADV 6CYD SER A 563 UNP O00408 EXPRESSION TAG SEQADV 6CYD THR A 564 UNP O00408 EXPRESSION TAG SEQADV 6CYD SER A 565 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU A 566 UNP O00408 EXPRESSION TAG SEQADV 6CYD TYR A 567 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS A 568 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS A 569 UNP O00408 EXPRESSION TAG SEQADV 6CYD ALA A 570 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLY A 571 UNP O00408 EXPRESSION TAG SEQADV 6CYD PHE A 572 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP A 573 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP A 574 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP A 575 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP A 576 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS A 577 UNP O00408 EXPRESSION TAG SEQADV 6CYD MET B 547 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 548 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 549 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 550 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 551 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 552 UNP O00408 EXPRESSION TAG SEQADV 6CYD HIS B 553 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLU B 554 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASN B 555 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU B 556 UNP O00408 EXPRESSION TAG SEQADV 6CYD TYR B 557 UNP O00408 EXPRESSION TAG SEQADV 6CYD PHE B 558 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLN B 559 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLY B 560 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLU B 561 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU B 562 UNP O00408 EXPRESSION TAG SEQADV 6CYD SER B 563 UNP O00408 EXPRESSION TAG SEQADV 6CYD THR B 564 UNP O00408 EXPRESSION TAG SEQADV 6CYD SER B 565 UNP O00408 EXPRESSION TAG SEQADV 6CYD LEU B 566 UNP O00408 EXPRESSION TAG SEQADV 6CYD TYR B 567 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS B 568 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS B 569 UNP O00408 EXPRESSION TAG SEQADV 6CYD ALA B 570 UNP O00408 EXPRESSION TAG SEQADV 6CYD GLY B 571 UNP O00408 EXPRESSION TAG SEQADV 6CYD PHE B 572 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP B 573 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP B 574 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP B 575 UNP O00408 EXPRESSION TAG SEQADV 6CYD ASP B 576 UNP O00408 EXPRESSION TAG SEQADV 6CYD LYS B 577 UNP O00408 EXPRESSION TAG SEQRES 1 A 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 A 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 A 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 A 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 A 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 A 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 A 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 A 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 A 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 A 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 A 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 A 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 A 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 A 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 A 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 A 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 A 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 A 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 A 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 A 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 A 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 A 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 A 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 A 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 A 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 A 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 A 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 A 373 ASN SER LEU ASP PHE LEU ASP GLU GLU SEQRES 1 B 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 B 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 B 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 B 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 B 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 B 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 B 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 B 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 B 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 B 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 B 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 B 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 B 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 B 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 B 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 B 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 B 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 B 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 B 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 B 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 B 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 B 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 B 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 B 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 B 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 B 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 B 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 B 373 ASN SER LEU ASP PHE LEU ASP GLU GLU HET ZN A1001 1 HET MG A1002 1 HET FKG A1003 25 HET EDO A1004 4 HET EDO A1005 4 HET ZN B1001 1 HET MG B1002 1 HET FKG B1003 25 HET EDO B1004 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM FKG 3-(HYDROXYMETHYL)-6-METHYL-1-{(1S)-1-[4- HETNAM 2 FKG (TRIFLUOROMETHYL)PHENYL]ETHYL}-1,5-DIHYDRO-4H- HETNAM 3 FKG PYRAZOLO[3,4-D]PYRIMIDIN-4-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 FKG 2(C16 H15 F3 N4 O2) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 12 HOH *371(H2 O) HELIX 1 AA1 THR A 583 GLY A 589 1 7 HELIX 2 AA2 PRO A 592 ASP A 597 1 6 HELIX 3 AA3 THR A 606 LEU A 610 5 5 HELIX 4 AA4 PRO A 611 ASP A 613 5 3 HELIX 5 AA5 ASP A 614 MET A 626 1 13 HELIX 6 AA6 ASN A 627 TYR A 632 1 6 HELIX 7 AA7 ASP A 635 GLY A 649 1 15 HELIX 8 AA8 ASN A 657 GLU A 676 1 20 HELIX 9 AA9 LEU A 677 TYR A 680 5 4 HELIX 10 AB1 GLU A 682 HIS A 696 1 15 HELIX 11 AB2 ASN A 704 SER A 711 1 8 HELIX 12 AB3 SER A 713 SER A 720 1 8 HELIX 13 AB4 SER A 724 ASN A 739 1 16 HELIX 14 AB5 SER A 750 ALA A 767 1 18 HELIX 15 AB6 ASP A 769 GLY A 787 1 19 HELIX 16 AB7 ASN A 792 LEU A 809 1 18 HELIX 17 AB8 SER A 810 LYS A 814 5 5 HELIX 18 AB9 GLY A 815 MET A 840 1 26 HELIX 19 AC1 MET A 845 ASP A 849 5 5 HELIX 20 AC2 TYR A 854 ILE A 866 1 13 HELIX 21 AC3 ILE A 866 PHE A 878 1 13 HELIX 22 AC4 ALA A 881 PHE A 902 1 22 HELIX 23 AC5 LEU B 562 LEU B 566 5 5 HELIX 24 AC6 TYR B 582 HIS B 587 1 6 HELIX 25 AC7 PRO B 592 ASP B 597 1 6 HELIX 26 AC8 THR B 606 LEU B 610 5 5 HELIX 27 AC9 PRO B 611 ASP B 613 5 3 HELIX 28 AD1 ASP B 614 MET B 626 1 13 HELIX 29 AD2 ASN B 627 LYS B 633 1 7 HELIX 30 AD3 ASP B 635 GLY B 649 1 15 HELIX 31 AD4 ASN B 657 GLU B 676 1 20 HELIX 32 AD5 LEU B 677 TYR B 680 5 4 HELIX 33 AD6 GLU B 682 HIS B 696 1 15 HELIX 34 AD7 ASN B 704 SER B 711 1 8 HELIX 35 AD8 SER B 713 SER B 720 1 8 HELIX 36 AD9 SER B 721 GLY B 723 5 3 HELIX 37 AE1 SER B 724 ASN B 739 1 16 HELIX 38 AE2 SER B 750 ALA B 767 1 18 HELIX 39 AE3 ASP B 769 GLY B 787 1 19 HELIX 40 AE4 ASN B 792 LEU B 809 1 18 HELIX 41 AE5 SER B 810 LYS B 814 5 5 HELIX 42 AE6 GLY B 815 MET B 840 1 26 HELIX 43 AE7 MET B 845 ASP B 849 5 5 HELIX 44 AE8 TYR B 854 ILE B 866 1 13 HELIX 45 AE9 ILE B 866 PHE B 878 1 13 HELIX 46 AF1 ALA B 881 HIS B 900 1 20 LINK NE2 HIS A 660 ZN ZN A1001 1555 1555 2.09 LINK NE2 HIS A 696 ZN ZN A1001 1555 1555 2.10 LINK OD2 ASP A 697 ZN ZN A1001 1555 1555 2.04 LINK OD1 ASP A 697 MG MG A1002 1555 1555 2.05 LINK OD1 ASP A 808 ZN ZN A1001 1555 1555 2.14 LINK ZN ZN A1001 O HOH A1101 1555 1555 2.56 LINK ZN ZN A1001 O HOH A1218 1555 1555 2.27 LINK MG MG A1002 O HOH A1101 1555 1555 2.02 LINK MG MG A1002 O HOH A1106 1555 1555 1.99 LINK MG MG A1002 O HOH A1138 1555 1555 2.13 LINK MG MG A1002 O HOH A1175 1555 1555 2.03 LINK MG MG A1002 O HOH A1223 1555 1555 2.10 LINK NE2 HIS B 660 ZN ZN B1001 1555 1555 2.04 LINK NE2 HIS B 696 ZN ZN B1001 1555 1555 2.15 LINK OD2 ASP B 697 ZN ZN B1001 1555 1555 2.10 LINK OD1 ASP B 697 MG MG B1002 1555 1555 2.09 LINK OD1 ASP B 808 ZN ZN B1001 1555 1555 2.16 LINK ZN ZN B1001 O HOH B1102 1555 1555 2.38 LINK ZN ZN B1001 O HOH B1186 1555 1555 2.31 LINK MG MG B1002 O HOH B1102 1555 1555 2.14 LINK MG MG B1002 O HOH B1103 1555 1555 2.12 LINK MG MG B1002 O HOH B1113 1555 1555 2.12 LINK MG MG B1002 O HOH B1135 1555 1555 2.18 LINK MG MG B1002 O HOH B1239 1555 1555 2.06 SITE 1 AC1 6 HIS A 660 HIS A 696 ASP A 697 ASP A 808 SITE 2 AC1 6 HOH A1101 HOH A1218 SITE 1 AC2 6 ASP A 697 HOH A1101 HOH A1106 HOH A1138 SITE 2 AC2 6 HOH A1175 HOH A1223 SITE 1 AC3 15 TYR A 655 THR A 768 LEU A 770 THR A 805 SITE 2 AC3 15 ASP A 808 LEU A 809 GLN A 812 ILE A 826 SITE 3 AC3 15 TYR A 827 GLN A 859 PHE A 862 EDO A1005 SITE 4 AC3 15 HOH A1137 HOH A1210 HOH A1255 SITE 1 AC4 6 HIS A 865 ILE A 866 HOH A1248 LYS B 901 SITE 2 AC4 6 THR B 903 PHE B 915 SITE 1 AC5 5 THR A 768 ASP A 769 LEU A 770 FKG A1003 SITE 2 AC5 5 HOH A1236 SITE 1 AC6 6 HIS B 660 HIS B 696 ASP B 697 ASP B 808 SITE 2 AC6 6 HOH B1102 HOH B1186 SITE 1 AC7 6 ASP B 697 HOH B1102 HOH B1103 HOH B1113 SITE 2 AC7 6 HOH B1135 HOH B1239 SITE 1 AC8 13 TYR B 655 THR B 768 LEU B 770 THR B 805 SITE 2 AC8 13 ASP B 808 LEU B 809 GLN B 812 TYR B 827 SITE 3 AC8 13 GLN B 859 PHE B 862 EDO B1004 HOH B1115 SITE 4 AC8 13 HOH B1202 SITE 1 AC9 5 THR B 768 LEU B 770 FKG B1003 HOH B1107 SITE 2 AC9 5 HOH B1119 CRYST1 71.940 91.820 102.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013900 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009725 0.00000