HEADER OXIDOREDUCTASE 10-APR-18 6D0G TITLE 1.78 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF QUERCETIN 2,3- TITLE 2 DIOXYGENASE FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUERCETIN 2,3-DIOXYGENASE; COMPND 5 EC: 1.13.11.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: YHHW_2, YHHW_1, A388_00159, A7A65_05705, A7M90_08420, SOURCE 5 A7N09_08935, AZE33_00735, B4R90_09220, B9X91_00175, BGC29_04645, SOURCE 6 CAS83_08120, CBE85_14535, CEJ63_12860, CHQ89_16690, CPI82_15400, SOURCE 7 CV954_18565, LV38_01393; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, QUERCETIN 2, 3-DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,J.S.BRUNZELLE,I.DUBROVSKA,O.KIRYUKHINA, AUTHOR 2 M.ENDRES,W.F.ANDERSON,K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 25-APR-18 6D0G 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,J.S.BRUNZELLE,I.DUBROVSKA, JRNL AUTH 2 O.KIRYUKHINA,M.ENDRES,W.F.ANDERSON,K.J.F.SATCHELL, JRNL AUTH 3 A.JOACHIMIAK JRNL TITL 1.78 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF QUERCETIN JRNL TITL 2 2,3-DIOXYGENASE FROM ACINETOBACTER BAUMANNII. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 28236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2516 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2310 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3442 ; 1.509 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5384 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 3.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;32.744 ;24.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;10.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ; 8.249 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2852 ; 0.021 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1250 ; 0.996 ; 1.708 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 0.988 ; 1.707 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1580 ; 1.461 ; 2.559 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1581 ; 1.461 ; 2.560 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 1.919 ; 1.960 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1266 ; 1.919 ; 1.961 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1862 ; 2.779 ; 2.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2667 ; 5.251 ;21.542 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2610 ; 5.156 ;20.831 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4490 -0.1982 26.0692 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0762 REMARK 3 T33: 0.0500 T12: 0.0134 REMARK 3 T13: 0.0070 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 5.0184 L22: 4.8745 REMARK 3 L33: 6.5564 L12: -2.9099 REMARK 3 L13: 3.6042 L23: -3.9880 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.0314 S13: -0.0961 REMARK 3 S21: -0.1427 S22: -0.0677 S23: -0.2608 REMARK 3 S31: 0.1485 S32: 0.3267 S33: -0.0564 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9295 2.5162 28.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0550 REMARK 3 T33: 0.0118 T12: -0.0056 REMARK 3 T13: 0.0005 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.7592 L22: 1.2129 REMARK 3 L33: 0.9808 L12: 0.1179 REMARK 3 L13: 0.3792 L23: -0.1837 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.2394 S13: -0.0275 REMARK 3 S21: 0.0390 S22: 0.0237 S23: 0.0088 REMARK 3 S31: -0.0119 S32: -0.0161 S33: -0.0478 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7848 -1.1551 38.1104 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.3056 REMARK 3 T33: 0.0773 T12: 0.0054 REMARK 3 T13: -0.0702 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.0812 L22: 2.6279 REMARK 3 L33: 2.2710 L12: 0.5455 REMARK 3 L13: -0.1572 L23: 0.9008 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: -0.6968 S13: -0.1503 REMARK 3 S21: 0.2729 S22: 0.0375 S23: -0.2639 REMARK 3 S31: 0.0442 S32: 0.3610 S33: -0.1743 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4075 -7.3433 10.4403 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.0438 REMARK 3 T33: 0.0470 T12: 0.0100 REMARK 3 T13: -0.0165 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.6483 L22: 2.6148 REMARK 3 L33: 3.2412 L12: 0.1810 REMARK 3 L13: -0.1572 L23: -0.8399 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.1752 S13: -0.2228 REMARK 3 S21: -0.4726 S22: -0.0254 S23: -0.0207 REMARK 3 S31: 0.3607 S32: 0.1964 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6D0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : 0.75500 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.0 MG/ML PROTEIN IN 0.01 M TRIS, PH REMARK 280 8.3, SCREEN: PACT (F2) (0.2 M SODIUM BROMIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 6.5, 20% W/V PEG3350), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.37050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.37050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.94150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.80800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.94150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.80800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.37050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.94150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.80800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.37050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.94150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.80800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 ASP A 14 REMARK 465 CYS A 15 REMARK 465 GLU A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 267 -120.13 53.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 NE2 REMARK 620 2 HIS A 78 NE2 97.9 REMARK 620 3 HIS A 120 NE2 86.7 94.8 REMARK 620 4 HOH A 628 O 84.8 171.1 93.8 REMARK 620 5 HOH A 673 O 101.1 91.3 169.3 79.8 REMARK 620 6 HOH A 575 O 167.0 94.5 96.2 82.3 74.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95890 RELATED DB: TARGETTRACK DBREF 6D0G A 1 315 UNP V5VHS3 V5VHS3_ACIBA 1 315 SEQADV 6D0G SER A -2 UNP V5VHS3 EXPRESSION TAG SEQADV 6D0G ASN A -1 UNP V5VHS3 EXPRESSION TAG SEQADV 6D0G ALA A 0 UNP V5VHS3 EXPRESSION TAG SEQRES 1 A 318 SER ASN ALA MSE SER ASN ASN ASN ASP TYR ASP ILE SER SEQRES 2 A 318 ASP SER LYS ASP CYS GLU LYS PHE ALA ASN GLN PHE ILE SEQRES 3 A 318 GLN GLU PHE PRO ILE ARG SER ALA GLU ILE GLY GLN GLY SEQRES 4 A 318 THR VAL ILE LYS ARG ALA LEU PRO SER ARG GLN LYS ARG SEQRES 5 A 318 MSE ILE GLY ALA TRP CYS PHE LEU ASP HIS ALA GLY PRO SEQRES 6 A 318 VAL THR PHE PRO ALA GLY ASN GLY LEU ASP VAL GLY PRO SEQRES 7 A 318 HIS PRO HIS ILE GLY LEU GLN THR PHE THR TRP MSE ILE SEQRES 8 A 318 GLU GLY THR MSE MSE HIS THR ASP SER LEU GLY SER LYS SEQRES 9 A 318 GLN LEU ILE ARG PRO LYS GLN VAL ASN LEU MSE THR ALA SEQRES 10 A 318 GLY HIS GLY ILE SER HIS THR GLU VAL ALA PRO ASP THR SEQRES 11 A 318 GLU THR GLN MSE HIS ALA ALA GLN LEU TRP ILE ALA LEU SEQRES 12 A 318 PRO ASP HIS LYS ARG ASN MSE ASP PRO LYS PHE GLU HIS SEQRES 13 A 318 TYR PRO ASP LEU PRO VAL VAL GLU LYS ASP GLY LEU GLU SEQRES 14 A 318 PHE THR VAL LEU VAL GLY GLU TYR LEU GLU THR THR SER SEQRES 15 A 318 PRO VAL VAL VAL HIS THR PRO LEU VAL GLY VAL ASP LEU SEQRES 16 A 318 ILE ALA THR GLN ASP THR LYS THR ARG ILE PRO LEU ASN SEQRES 17 A 318 PRO GLU PHE GLU TYR GLY PHE MSE ALA LEU ASP GLY VAL SEQRES 18 A 318 ALA HIS VAL ASN GLY HIS GLU LEU THR ALA ASP ASN MSE SEQRES 19 A 318 VAL VAL LEU ASP THR GLY LEU ASN GLU ILE GLU ILE GLU SEQRES 20 A 318 VAL LYS LYS GLY ASN ARG VAL LEU LEU ILE GLY GLY GLU SEQRES 21 A 318 PRO PHE GLU THR PRO ILE LEU LEU TRP TRP ASN PHE VAL SEQRES 22 A 318 ALA ARG THR MSE ASP ASP LEU LYS GLU ALA ARG GLU GLN SEQRES 23 A 318 TRP VAL ASN HIS ASP VAL ARG PHE GLY GLU ILE PRO ASP SEQRES 24 A 318 TYR VAL GLY ALA ARG LEU GLU ALA PRO VAL LEU PRO ASP SEQRES 25 A 318 GLN MSE ARG ALA SER LYS MODRES 6D0G MSE A 50 MET MODIFIED RESIDUE MODRES 6D0G MSE A 87 MET MODIFIED RESIDUE MODRES 6D0G MSE A 92 MET MODIFIED RESIDUE MODRES 6D0G MSE A 93 MET MODIFIED RESIDUE MODRES 6D0G MSE A 112 MET MODIFIED RESIDUE MODRES 6D0G MSE A 131 MET MODIFIED RESIDUE MODRES 6D0G MSE A 147 MET MODIFIED RESIDUE MODRES 6D0G MSE A 213 MET MODIFIED RESIDUE MODRES 6D0G MSE A 231 MET MODIFIED RESIDUE MODRES 6D0G MSE A 274 MET MODIFIED RESIDUE MODRES 6D0G MSE A 311 MET MODIFIED RESIDUE HET MSE A 50 8 HET MSE A 87 8 HET MSE A 92 8 HET MSE A 93 8 HET MSE A 112 8 HET MSE A 131 8 HET MSE A 147 8 HET MSE A 213 8 HET MSE A 231 8 HET MSE A 274 16 HET MSE A 311 16 HET MN A 401 1 HET BR A 402 1 HET BR A 403 1 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM BR BROMIDE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 MN MN 2+ FORMUL 3 BR 2(BR 1-) FORMUL 5 HOH *235(H2 O) HELIX 1 AA1 PHE A 18 GLN A 21 5 4 HELIX 2 AA2 PRO A 141 ARG A 145 5 5 HELIX 3 AA3 THR A 273 ASN A 286 1 14 HELIX 4 AA4 ASP A 288 GLY A 292 5 5 SHEET 1 AA1 7 ILE A 23 PRO A 27 0 SHEET 2 AA1 7 ASN A 230 LEU A 234 -1 O VAL A 233 N GLN A 24 SHEET 3 AA1 7 GLU A 209 ASP A 216 -1 N TYR A 210 O LEU A 234 SHEET 4 AA1 7 ARG A 250 GLY A 256 -1 O LEU A 252 N MSE A 213 SHEET 5 AA1 7 LEU A 187 ALA A 194 -1 N LEU A 192 O VAL A 251 SHEET 6 AA1 7 LEU A 165 VAL A 171 -1 N THR A 168 O ASP A 191 SHEET 7 AA1 7 VAL A 159 LYS A 162 -1 N VAL A 160 O PHE A 167 SHEET 1 AA2 7 ARG A 29 ILE A 33 0 SHEET 2 AA2 7 THR A 37 LEU A 43 -1 O ILE A 39 N ALA A 31 SHEET 3 AA2 7 TRP A 54 THR A 64 -1 O HIS A 59 N LYS A 40 SHEET 4 AA2 7 GLN A 130 ALA A 139 -1 O ALA A 133 N ALA A 60 SHEET 5 AA2 7 LEU A 81 GLY A 90 -1 N PHE A 84 O LEU A 136 SHEET 6 AA2 7 GLN A 108 THR A 113 -1 O MSE A 112 N THR A 83 SHEET 7 AA2 7 LYS A 150 TYR A 154 -1 O TYR A 154 N VAL A 109 SHEET 1 AA3 4 ASP A 72 HIS A 78 0 SHEET 2 AA3 4 ILE A 118 VAL A 123 -1 O GLU A 122 N VAL A 73 SHEET 3 AA3 4 MSE A 92 ASP A 96 -1 N MSE A 93 O VAL A 123 SHEET 4 AA3 4 LYS A 101 ILE A 104 -1 O GLN A 102 N HIS A 94 SHEET 1 AA4 2 GLU A 173 TYR A 174 0 SHEET 2 AA4 2 THR A 177 THR A 178 -1 O THR A 177 N TYR A 174 SHEET 1 AA5 4 THR A 198 PRO A 203 0 SHEET 2 AA5 4 GLU A 240 VAL A 245 -1 O ILE A 241 N ILE A 202 SHEET 3 AA5 4 ALA A 219 VAL A 221 -1 N HIS A 220 O GLU A 244 SHEET 4 AA5 4 HIS A 224 LEU A 226 -1 O LEU A 226 N ALA A 219 SHEET 1 AA6 2 LEU A 264 TRP A 266 0 SHEET 2 AA6 2 PHE A 269 ALA A 271 -1 O ALA A 271 N LEU A 264 LINK C ARG A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ILE A 51 1555 1555 1.34 LINK NE2 HIS A 76 MN MN A 401 1555 1555 2.21 LINK NE2 HIS A 78 MN MN A 401 1555 1555 2.28 LINK C TRP A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N ILE A 88 1555 1555 1.33 LINK C THR A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N HIS A 94 1555 1555 1.33 LINK C LEU A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N THR A 113 1555 1555 1.32 LINK NE2 HIS A 120 MN MN A 401 1555 1555 2.22 LINK C GLN A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N HIS A 132 1555 1555 1.33 LINK C ASN A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ASP A 148 1555 1555 1.34 LINK C PHE A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N ALA A 214 1555 1555 1.33 LINK C ASN A 230 N MSE A 231 1555 1555 1.32 LINK C MSE A 231 N VAL A 232 1555 1555 1.33 LINK C THR A 273 N AMSE A 274 1555 1555 1.33 LINK C THR A 273 N BMSE A 274 1555 1555 1.33 LINK C AMSE A 274 N ASP A 275 1555 1555 1.33 LINK C BMSE A 274 N ASP A 275 1555 1555 1.34 LINK C GLN A 310 N AMSE A 311 1555 1555 1.33 LINK C GLN A 310 N BMSE A 311 1555 1555 1.34 LINK C AMSE A 311 N ARG A 312 1555 1555 1.33 LINK C BMSE A 311 N ARG A 312 1555 1555 1.34 LINK MN MN A 401 O HOH A 628 1555 1555 2.36 LINK MN MN A 401 O HOH A 673 1555 1555 1.99 LINK MN MN A 401 O HOH A 575 1555 1555 2.29 CISPEP 1 LEU A 43 PRO A 44 0 -5.32 CISPEP 2 GLY A 61 PRO A 62 0 1.36 SITE 1 AC1 6 HIS A 76 HIS A 78 HIS A 120 HOH A 575 SITE 2 AC1 6 HOH A 628 HOH A 673 SITE 1 AC2 4 VAL A 63 THR A 64 HIS A 143 BR A 403 SITE 1 AC3 3 VAL A 63 GLN A 130 BR A 402 CRYST1 41.883 73.616 202.741 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004932 0.00000