HEADER TRANSFERASE 12-APR-18 6D22 TITLE CRYSTAL STRUCTURE OF TYROSINE-PROTEIN KINASE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.10.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ALLOSTRIC INHIBITOR TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.GREASLEY,D.BROWN REVDAT 3 13-MAR-24 6D22 1 REMARK REVDAT 2 01-MAY-19 6D22 1 JRNL REVDAT 1 02-MAY-18 6D22 0 JRNL AUTH S.K.BAGAL,K.OMOTO,D.C.BLAKEMORE,P.J.BUNGAY,J.G.BILSLAND, JRNL AUTH 2 P.J.CLARKE,M.S.CORBETT,C.N.CRONIN,J.J.CUI,R.DIAS, JRNL AUTH 3 N.J.FLANAGAN,S.E.GREASLEY,R.GRIMLEY,E.JOHNSON,D.FENGAS, JRNL AUTH 4 L.KITCHING,M.L.KRAUS,I.MCALPINE,A.NAGATA,G.J.WALDRON, JRNL AUTH 5 J.S.WARMUS JRNL TITL DISCOVERY OF ALLOSTERIC, POTENT, SUBTYPE SELECTIVE, AND JRNL TITL 2 PERIPHERALLY RESTRICTED TRKA KINASE INHIBITORS. JRNL REF J. MED. CHEM. V. 62 247 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 29672039 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00280 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 13113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -3.05000 REMARK 3 B12 (A**2) : 1.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.433 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.692 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6D22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.458 REMARK 200 RESOLUTION RANGE LOW (A) : 19.906 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 1.07300 REMARK 200 R SYM FOR SHELL (I) : 1.07300 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE + 20% PEG3K, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.56000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.34553 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.96333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.56000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.34553 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.96333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.56000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.34553 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.96333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.56000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.34553 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.96333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.56000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.34553 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.96333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.56000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.34553 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.96333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.69106 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 135.92667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.69106 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 135.92667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.69106 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 135.92667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.69106 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 135.92667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.69106 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 135.92667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.69106 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 135.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.56000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 30.34553 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.96333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 LEU A 795 REMARK 465 GLY A 796 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 507 SG CYS A 579 2.02 REMARK 500 OE2 GLU A 745 NH1 ARG A 761 2.07 REMARK 500 O LEU A 611 O HOH A 801 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 618 CA ALA A 618 CB 0.131 REMARK 500 TYR A 676 CE2 TYR A 676 CD2 0.110 REMARK 500 TYR A 680 CG TYR A 680 CD1 0.085 REMARK 500 TRP A 693 CE3 TRP A 693 CZ3 0.112 REMARK 500 GLU A 697 CG GLU A 697 CD 0.136 REMARK 500 VAL A 710 CB VAL A 710 CG1 -0.128 REMARK 500 VAL A 715 CB VAL A 715 CG2 0.137 REMARK 500 GLU A 719 CG GLU A 719 CD 0.104 REMARK 500 GLU A 719 CD GLU A 719 OE2 0.114 REMARK 500 PHE A 721 CE2 PHE A 721 CD2 0.140 REMARK 500 TRP A 728 CB TRP A 728 CG 0.114 REMARK 500 TYR A 729 CE1 TYR A 729 CZ 0.084 REMARK 500 CYS A 739 CB CYS A 739 SG -0.108 REMARK 500 GLU A 745 CG GLU A 745 CD 0.091 REMARK 500 GLU A 747 CG GLU A 747 CD 0.169 REMARK 500 ALA A 758 CA ALA A 758 CB 0.144 REMARK 500 GLU A 767 CG GLU A 767 CD 0.090 REMARK 500 ALA A 787 CA ALA A 787 CB 0.166 REMARK 500 ALA A 787 C ALA A 787 O 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 583 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 599 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 602 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 602 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 641 CB - CG - CD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 654 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 662 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 MET A 671 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 LEU A 689 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 702 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 748 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 501 93.42 92.22 REMARK 500 ASN A 531 63.37 39.60 REMARK 500 ASP A 537 -83.72 -59.30 REMARK 500 ALA A 612 129.81 100.36 REMARK 500 ARG A 649 -16.79 85.84 REMARK 500 ARG A 686 58.24 -58.38 REMARK 500 TYR A 791 -88.90 -116.88 REMARK 500 LEU A 792 157.46 60.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 684 GLY A 685 139.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 954 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 10.80 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 11.19 ANGSTROMS REMARK 525 HOH A 962 DISTANCE = 11.80 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 12.39 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 13.64 ANGSTROMS REMARK 525 HOH A 965 DISTANCE = 14.05 ANGSTROMS DBREF 6D22 A 502 796 UNP J3KP20 J3KP20_HUMAN 499 793 SEQADV 6D22 HIS A 490 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 HIS A 491 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 HIS A 492 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 HIS A 493 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 HIS A 494 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 HIS A 495 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 LEU A 496 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 VAL A 497 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 PRO A 498 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 ARG A 499 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 GLY A 500 UNP J3KP20 EXPRESSION TAG SEQADV 6D22 SER A 501 UNP J3KP20 EXPRESSION TAG SEQRES 1 A 307 HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER VAL SEQRES 2 A 307 HIS HIS ILE LYS ARG ARG ASP ILE VAL LEU LYS TRP GLU SEQRES 3 A 307 LEU GLY GLU GLY ALA PHE GLY LYS VAL PHE LEU ALA GLU SEQRES 4 A 307 CYS HIS ASN LEU LEU PRO GLU GLN ASP LYS MET LEU VAL SEQRES 5 A 307 ALA VAL LYS ALA LEU LYS GLU ALA SER GLU SER ALA ARG SEQRES 6 A 307 GLN ASP PHE GLN ARG GLU ALA GLU LEU LEU THR MET LEU SEQRES 7 A 307 GLN HIS GLN HIS ILE VAL ARG PHE PHE GLY VAL CYS THR SEQRES 8 A 307 GLU GLY ARG PRO LEU LEU MET VAL PHE GLU TYR MET ARG SEQRES 9 A 307 HIS GLY ASP LEU ASN ARG PHE LEU ARG SER HIS GLY PRO SEQRES 10 A 307 ASP ALA LYS LEU LEU ALA GLY GLY GLU ASP VAL ALA PRO SEQRES 11 A 307 GLY PRO LEU GLY LEU GLY GLN LEU LEU ALA VAL ALA SER SEQRES 12 A 307 GLN VAL ALA ALA GLY MET VAL TYR LEU ALA GLY LEU HIS SEQRES 13 A 307 PHE VAL HIS ARG ASP LEU ALA THR ARG ASN CYS LEU VAL SEQRES 14 A 307 GLY GLN GLY LEU VAL VAL LYS ILE GLY ASP PHE GLY MET SEQRES 15 A 307 SER ARG ASP ILE TYR SER THR ASP TYR TYR ARG VAL GLY SEQRES 16 A 307 GLY ARG THR MET LEU PRO ILE ARG TRP MET PRO PRO GLU SEQRES 17 A 307 SER ILE LEU TYR ARG LYS PHE THR THR GLU SER ASP VAL SEQRES 18 A 307 TRP SER PHE GLY VAL VAL LEU TRP GLU ILE PHE THR TYR SEQRES 19 A 307 GLY LYS GLN PRO TRP TYR GLN LEU SER ASN THR GLU ALA SEQRES 20 A 307 ILE ASP CYS ILE THR GLN GLY ARG GLU LEU GLU ARG PRO SEQRES 21 A 307 ARG ALA CYS PRO PRO GLU VAL TYR ALA ILE MET ARG GLY SEQRES 22 A 307 CYS TRP GLN ARG GLU PRO GLN GLN ARG HIS SER ILE LYS SEQRES 23 A 307 ASP VAL HIS ALA ARG LEU GLN ALA LEU ALA GLN ALA PRO SEQRES 24 A 307 PRO VAL TYR LEU ASP VAL LEU GLY FORMUL 2 HOH *165(H2 O) HELIX 1 AA1 LYS A 506 ARG A 508 5 3 HELIX 2 AA2 SER A 552 LEU A 567 1 16 HELIX 3 AA3 LEU A 597 HIS A 604 1 8 HELIX 4 AA4 GLY A 623 LEU A 644 1 22 HELIX 5 AA5 ALA A 652 ARG A 654 5 3 HELIX 6 AA6 MET A 671 TYR A 676 1 6 HELIX 7 AA7 SER A 677 TYR A 680 5 4 HELIX 8 AA8 PRO A 690 MET A 694 5 5 HELIX 9 AA9 PRO A 695 ARG A 702 1 8 HELIX 10 AB1 THR A 705 THR A 722 1 18 HELIX 11 AB2 SER A 732 GLN A 742 1 11 HELIX 12 AB3 PRO A 753 TRP A 764 1 12 HELIX 13 AB4 GLU A 767 ARG A 771 5 5 HELIX 14 AB5 SER A 773 ALA A 787 1 15 SHEET 1 AA1 5 ILE A 510 GLU A 518 0 SHEET 2 AA1 5 GLY A 522 CYS A 529 -1 O LEU A 526 N TRP A 514 SHEET 3 AA1 5 LEU A 540 LEU A 546 -1 O VAL A 541 N ALA A 527 SHEET 4 AA1 5 LEU A 586 GLU A 590 -1 O MET A 587 N LYS A 544 SHEET 5 AA1 5 PHE A 575 CYS A 579 -1 N PHE A 576 O VAL A 588 SHEET 1 AA2 3 GLY A 595 ASP A 596 0 SHEET 2 AA2 3 CYS A 656 VAL A 658 -1 O VAL A 658 N GLY A 595 SHEET 3 AA2 3 VAL A 664 ILE A 666 -1 O LYS A 665 N LEU A 657 SHEET 1 AA3 2 TYR A 681 ARG A 682 0 SHEET 2 AA3 2 MET A 688 LEU A 689 -1 O LEU A 689 N TYR A 681 CISPEP 1 ARG A 583 PRO A 584 0 -3.76 CRYST1 105.120 105.120 203.890 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009513 0.005492 0.000000 0.00000 SCALE2 0.000000 0.010985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004905 0.00000